BAC Information

Click to search

BAC

Clone NameMSMg01-535G01
Chromosome18 (Build37)
Map Location 43,547,512 - 43,548,106
singlet/doubletsinglet
Overlap geneDpysl3
Upstream genePou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a
Downstream geneLOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535G01.T7 (MSMg01no535_g01.b1)MSMg01-535G01.TJ (MSMg01no535_g01.g1)
ACCAG602841AG602842
length1,518770
length of high quality
(start - end)
---598 (73 - 670)
definitionCHROMAT_FILE: MSMg01no535_g01.b1 PHD_FILE: MSMg01no535_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:11 2005CHROMAT_FILE: MSMg01no535_g01.g1 PHD_FILE: MSMg01no535_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCTCTTCACTAGGGGTGTNNGAAATAAAAGGTGTCGTGTGGGGTTGT
NNGTTCTGTCGCGTCGGGGCCGGAGCGGAGAGCGGGANNGAATAGAAAGA
CTGCATATCTCACGGATGTCTCTCATTAGCTGCTATCATGGAGNNCANCT
ACTCAATGTCGGTGAAAGAGAAGGACACACCGAGCAATACACACCGTCTC
TNNTTTCATTACCATTAATATGGATCATGCATATTCATTAATCATCTAAA
ATCTCCACACAACGACTCAGGCCAGCATGAAGAGGTGGAAGAGAACACAC
ACGTGCGTCACCCAGACACNGCCACGACCTCTACACTATCGCGCGACGCA
CGAACGGTAGTGACAAAGTATATCTTCATTATTGCGGTNCGNNTGCCTGC
GTCGGTGTGGTTCATCAATCTGAAGCAGCGAGTGCAGATGTTCATACGCC
GGCGTGTTCTATGTGNCTTCTATCTGTGATCGCGTGCCGCTGAGAAAAGT
GAACTAGTTAAACGATCACTATCACTGCTGAAGAGATACTTAGTGGTGCT
GCGCGTGACNANTCTCGGGAGGTACACATAATATAATACACGTCATTTAG
ATAATCCGTAGTCGATCCTGAATGGGACAACGCGCGTGCGAGACTCACTG
CACGCGTGGTTCCAGCANCCAATTGCTGCCATAAGCATCCTACTCGCTCA
AGCCTATAGAACTGCAATCGCGTGTCACGCGTTCTCCGCCTCCTACACAT
GATGCACATTACTGTCGCAGCTCTGATGCGAATAGATGAGATGAGTACGC
GCATCTNCAACGAGACCNGCTCGCTAATATAGCACCGTCGATACTCGCCA
CTATNTATACACCATCCCACTTTATAATACTCATGCGTATATATTCTGGC
AATCCACTTCTCCACTGCGACAAGACTTNCAGTGACCGTACTACGATATG
TGCTACTCTGGACCCATTATTAGTATCGGGCGCGCTTCGCGGTACGCGCC
ATCTCACCAGCCATATGCTGATCGAAATAAGCGCTCGCCAGATGATATTC
CAANACGAGTCGACACTCACCGCNCCGCCTCTGCTCCGACTATTATATAT
GTCTCGTTACACGCAATGAGTGTTGTGGTACACGTGTGTCTGATATTACA
TGTGTGTCCCGCGTACGCTAGTGAGCTTCTCANTCTATACACGTCAACTA
TTCACTGTNTGAATCGTCGATCCGGCTTCACGTATCNCGTCGTGTTTACT
GATTATTACGCTAACACACTCCGTGACCTATACAGATACTAGCTCTATAC
TGCATCTCGCAGCATCATCGACGCACGCTCGTGAGTACAGTAATCGACAT
ACGCTCACGACTACGGGATATATTCATCTACTACTCTCATTGACCATNTC
AACCACACTGTCGTGNCTCGTACGAGTNCGTCCATANTATCTACGCGACT
CTGTACACTTGTCAGTATAGATAGTATGTGTTCGCTTTTCTATCCGTCNC
CGATCTACTGCGCTCATT
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAGAGATTTCTGAACAGAATTTGAAA
CTTATCTGGCTTCCACCACCAGCTTGAAACAAACAAACAAATGCAAAAAC
AAAAACCAAGACCTTTCCTTTTCATTCCTCTGAGCTGTTGGAAGGTTCAA
TAAACTTTGACCCCTAAAAGTGGTCTGTGAACACCCGGATGTGTTCAAGA
TAGTAAATATTTGTTTATAAGATCTCAATTATGTCCCAGGGTGAGCATTA
ATAAAGGAACATTTGGCAACTGTCTGGTAAAGAGATTTTCCTGGGAAACT
TTGAAAATACGTTTTCAAACAGAAAAAATATGAAAGTGATGTCATAGAAT
GTTGATGATTTTTCTTGCCATAGTCATGTGACAACAGTCTATAGAATTGC
ACCTGTCATTCATTTCTGACAACAGGATAAGAGGCTACTAGATTGCCTAT
CGTCAGACCAAGAAACCTCCTAAATAGATTTGCACACTACTATTTTCAGT
CCTAATCAGCTTCCATCTAGAGCGGCCTAGGATCAATCCCCTTCCCAGCA
GGTAGTTTACAACTCAACTTCTAGTGGATTTTCTCTATCATTTCTTCCAA
AGTTATAGAAATTAAATTAAAGTTGAAAAAGAACAAAACCCCCTTTGTAC
CCTATATAACCCCTTTGTTCTTTAGCTATTGTTGTGTTTTATANGACCAT
TTATATCTGCTTATTACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_g01.g1 MSMg01no535_g01.g1 CHROMAT_FILE:
MSMg01no535_g01.g1 PHD_FILE: MSMg01no535_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:11 2005
         (598 letters)



>mm_chr18_43547312_43548306
          Length = 995

 Score = 1085 bits (561), Expect = 0.0
 Identities = 589/599 (98%), Gaps = 5/599 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagatttctgaacagaatttgaaacttatctggcttccaccaccagcttgaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 cagagagatttctgaacagaatttgaaacttatctggcttccaccaccagcttgaaacaa 736

                                                                       
Query: 61  acaaacaaatgcaaaaacaaaaaccaagacctttccttttcattcctctgagctgttgga 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 735 acaaacaaatgcaaaaacaaaaaccaagacctttcc-tttcattcctctgagctgttgga 677

                                                                       
Query: 121 aggttcaataaactttgacccct-aaaagtggtctgtgaacacccggatgtgttcaagat 179
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  ||||
Sbjct: 676 aggttcaataaactttgacccctgaaaa-tggtctgtgaacacccggatgtgtt--agat 620

                                                                       
Query: 180 agtaaatatttgtttataagatctcaattatgtcccagggtgagcattaataaaggaaca 239
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 619 agtaaatatttgtttataagatctcaattacgtctcagggtgagcattaataaaggaaca 560

                                                                       
Query: 240 tttggcaactgtctggtaaagagattttcctgggaaactttgaaaatacgttttcaaaca 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttggcaactgtgtggtaaagagattttcctgggaaactttgaaaatacgttttcaaaca 500

                                                                       
Query: 300 gaaaaaatatgaaagtgatgtcatagaatgttgatgatttttcttgccatagtcatgtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaaaaaatatgaaagtgatgtcatagaatgttgatgatttttcttgccatagtcatgtga 440

                                                                       
Query: 360 caacagtctatagaattgcacctgtcattcatttctgacaacaggataagaggctactag 419
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 caacagtctatagaattgcgcctgtcattcatttctgacaacaggataagaggccactag 380

                                                                       
Query: 420 attgcctatcgtcagaccaagaaacctcctaaatagatttgcacactactattttcagtc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attgcctatcgtcagaccaagaaacctcctaaatagatttgcacactactattttcagtc 320

                                                                       
Query: 480 ctaatcagcttccatctagagcggcctaggatcaatccccttcccagcaggtagtttaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctaatcagcttccatctagagcggcctaggatcaatccccttcccagcaggtagtttaca 260

                                                                      
Query: 540 actcaacttctagtggattttctctatcatttcttccaaagttatagaaattaaattaa 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 actcaacttctagtggattttctctatcatttcttccaaagttatagaaattaaattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 995
Length adjustment: 10
Effective length of query: 588
Effective length of database: 985
Effective search space:   579180
Effective search space used:   579180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)