Query= MSMg01no537_p12.b1 MSMg01no537_p12.b1 CHROMAT_FILE:
MSMg01no537_p12.b1 PHD_FILE: MSMg01no537_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(489 letters)
>mm_chr18_28535667_28536555
Length = 889
Score = 607 bits (314), Expect = e-178
Identities = 364/384 (94%), Gaps = 8/384 (2%)
Strand = Plus / Plus
Query: 5 gaattcctcctctctttcaattataagaactatcatttgtctcacaataataaatttcag 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 gaattcctcctcactttcaattataagaactatcatttgtctcacaataataaatttcag 76
Query: 65 tagtggtgccaaaaagccacattctggcaagataaagacagggctatatgataacagaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tagtggtgccaaaaagccacattctggcaagataaagacagggctatatgataacagaca 136
Query: 125 tatagctgtttatctctgataaaagcaataagcatccagagatagaatttaagggaatat 184
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 137 tatagctgtttatctctgataaaagcaataagcacccagagatggaatttaagggaatat 196
Query: 185 ttcggtctttgaccctggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt----gt 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 197 ttcagtctttgaccctggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt 256
Query: 241 ctgtctgtctgtctgtctgtctgtct--ctctgtgtgtgtgtgtctgtctgtat--ctct 296
||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct: 257 gtgtctgtctgtctgtctgtctgtctgtctctgtgtgtgtgtgtctgtctgtctgtctct 316
Query: 297 ctctctgtctctctctctctgtctctctctctctgtctctctctctctgtgtgtgtgtgt 356
|||||||||||||||||||||||||||||||||||||||||||||||| | | | | | |
Sbjct: 317 ctctctgtctctctctctctgtctctctctctctgtctctctctctctctctctctctct 376
Query: 357 gtgtgtgtgtgtgtgtgtgtgtgt 380
||||||||||||||||||||||||
Sbjct: 377 gtgtgtgtgtgtgtgtgtgtgtgt 400
Score = 80.0 bits (41), Expect = 3e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 344 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 388
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 216 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgt 260
Score = 72.3 bits (37), Expect = 7e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 354 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat 390
|||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat 252
Score = 72.3 bits (37), Expect = 7e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 204 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
|||||||||||||||||||||||||||||||||||||
Sbjct: 550 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 586
Score = 72.3 bits (37), Expect = 7e-17
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 204 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
|||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 248
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 11
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_p12.g1 MSMg01no537_p12.g1 CHROMAT_FILE:
MSMg01no537_p12.g1 PHD_FILE: MSMg01no537_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
(577 letters)
>mm_chr18_28685905_28686881
Length = 977
Score = 1069 bits (553), Expect = 0.0
Identities = 571/577 (98%)
Strand = Plus / Minus
Query: 1 tccccaattcttcttacactgattatccagtcccagtgaaatcctcactatttatttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tccccaattcttcttacactgattatccagtcccagtgaaatcctcactatttatttatt 718
Query: 61 tacatacttgattatggatgtgtacatgtgctgtgtgtaacccatacatttcagtctgca 120
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct: 717 tacatacttgattatggatgtgtacatgtgctgtgcgtaacccatgcatttcagtgtgca 658
Query: 121 gcttcatatggctaggtccacacatgcaggttctggcgcaatacttttcttcttctattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gcttcatatggctaggtccacacatgcaggttctggcgcaatacttttcttcttctattg 598
Query: 181 ctatttgctttattcctctgagacagattttctggactagaagcttaccagtttcaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctatttgctttattcctctgagacagattttctggactagaagcttaccagtttcaccca 538
Query: 241 caaattcatttgtcttctgtgtctcaaggccagtgttttgtgaaaaaaatggcctggttt 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 537 caaattcatttgtcttctgtgtctcaaggccagtgttatgtgaaaaaaatggcctggttt 478
Query: 301 ttatacaggggcttagtcatttaaacttaggttcttacaactctaacactcttaccagtg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 477 ttatacaggggcttagtcatttaaacttaggttcttacaactccaacactcttaccagtg 418
Query: 361 ccaattctgatgtatacaactgtctacttcatatcttggttttttcatttctcctaaatt 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 417 ccaattctgatgtatacaactgtctacttcatatcttggtttttttatttctcctaaatt 358
Query: 421 gtgccttcccacaaagtattctcagactttggatgaaaatgaaacttaattgctatagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gtgccttcccacaaagtattctcagactttggatgaaaatgaaacttaattgctatagta 298
Query: 481 tatttcttggatgcagaagacacaggctttcataattcagagatggtggtccagaagtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tatttcttggatgcagaagacacaggctttcataattcagagatggtggtccagaagtag 238
Query: 541 ggagttgaaggcacagcatcaaaagtttgtaacgcag 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggagttgaaggcacagcatcaaaagtttgtaacgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
