NGGAGGGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
GNCGCGGAATCCTTATTTCCAAGTTCTACCCAGCTTCTCCATGGCTCTGT
GCTCCACACCTCATTGTTGCTTCTGGGGACAGGAGGCATGGAGTGTCTGG
TCTCATCTGTGTCCTGGGTCACATCTTTCTCACACCTTCCCTGGACATGG
CATGAGGCATGTCCCATCAGACGGCAGGACTATCAGCCTGGCACCGGGGC
TTTCTCCCCAGGACAGCTGACTGGTAGGCAGGGTGGGGTTCACCCTGCTT
GCCACAGTCACCCCTTCCACCACCACCCTCACAGGCAGCATCAGCAGCAG
GATCTTAAAGAGCCCAGTTCTGAGTTTAGTTTTCTAGCCCTGTTTCTTTA
TTTCAGTGATTAATATTAATAAATCCCTACTTTCCTTCCTGAGAAATTCT
TAGCACTTTGTTTGAAAGATAAAGAACCTATTTTGCATGAAAGCTTAAAG
TATCCACCTTTCCAACCTCTTTTCTTTACTAAAGATATGTTAAAGATGTG
TGTATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTNNTTNTTTTN

TACATTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCATAAGCCACCACTATGTCT
TTTTATTGGGGGGAATTAAGACTACTAATATTGAGAGTTATTGATAAAAA
CTAGATATTGATTCCTGTTATTTTGTTTGTGATGTGGGGTTTTCCATTTC
TTTTGATTTACTGTTATAAGTCACTTCAATGTCTTTTTATTATGTAATGT
TTTCCTTTCTCAGTTGACTATGATTCTCTTGCAATCGACCAATCTTGCCT
GGAATCTGTAGTCTCACAGACCTTGGATCCTTTCAGAGTCTTCATTGAAA
AGCCAGGTGTTATTCTAATGCACCTGCCTTCATTGGCAGTGTGGTCTTTT
CCCCTTCCAACCCTGAACATCCTTTCTTTGCTTTATGCCATTTAGTGTTT
GGTGTTATTTTTATGTGCCATGGGTAATTTCTTTTCTGATCTAATCTATT
TGTTATTGTGTGAGCTTCTTCTACCTTGATATATATCTCTTTCTTTAATT
TGGGATAATTTTTATGATTTTAAAAATATATTTTCTGTCTAGCTGTCCTG
GCATGCTCTCCTTCCTTCGTACTTATTATTGATTGATTTGGTCCTGTCAT
GGTTGATAATTTCTCCAGGTTTTGTACCTGGATTCTTCTAGAATTATNAT
TTTCTTTGACTGTAGGATCTCTTTTTTCTACCTTCTTTATAATTTGAAAT
TCCTTT

Query= MSMg01no539_m13.b1 MSMg01no539_m13.b1 CHROMAT_FILE:
MSMg01no539_m13.b1 PHD_FILE: MSMg01no539_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:52 2005
         (506 letters)



>mm_chr18_83691862_83692767
          Length = 906

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/504 (99%), Gaps = 2/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaa-tccttatttccaagttctacccagcttctccatggctctgtgctccacacctcat 61
           |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccttaaatccaagttctacccagcttctccatggctctgtgctccacacctcat 262

                                                                       
Query: 62  tgttgcttctggggacaggaggcatggagtgtctggtctcatctgtgtcctgggtcacat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttgcttctggggacaggaggcatggagtgtctggtctcatctgtgtcctgggtcacat 322

                                                                       
Query: 122 ctttctcacaccttccctggacatggcatgaggcatgtcccatcagacggcaggactatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctttctcacaccttccctggacatggcatgaggcatgtcccatcagacggcaggactatc 382

                                                                       
Query: 182 agcctggcaccggggctttctccccaggacagctgactggtaggcagggtggggttcacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agcctggcaccggggctttctccccaggacagctgactggtaggcagggtggggttcacc 442

                                                                       
Query: 242 ctgcttgccacagtcaccccttccaccaccaccctcacaggcagcatcagcagcaggatc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgcttgccacagtcaccccttccaccaccaccctcacaggcagcatcagcagcaggatc 502

                                                                       
Query: 302 ttaaagagcccagttctgagtttagttttctagccctgtttctttatttcagtgattaat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttaaagagcccagttctgagtttagttttctagccctgtttctttatttcagtgattaat 562

                                                                       
Query: 362 attaataaatccctactttccttcctgagaaattcttagcactttgtttgaaagataaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attaataaatccctactttccttcctgagaaattcttagcactttgtttgaaagataaag 622

                                                                       
Query: 422 aacctattttgcatgaaagcttaaagtatccacctttccaacctcttttctttactaaag 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aacctattttgcatgaaagcttaaagtatccacctttccaacctcttttctttactaaag 682

                                   
Query: 482 atatgttaaagatgtgtgtatgtg 505
           ||||||||||| ||||||||||||
Sbjct: 683 atatgttaaag-tgtgtgtatgtg 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)