BAC Information

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BAC

Clone NameMSMg01-540G16
Chromosome18 (Build37)
Map Location 66,962,420 - 66,962,929
singlet/doubletsinglet
Overlap genenone
Upstream geneSec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540G16.T7 (MSMg01no540_g16.b1)MSMg01-540G16.TJ (MSMg01no540_g16.g1)
ACCAG606673AG606674
length659771
length of high quality
(start - end)		---569 (74 - 642)
definitionCHROMAT_FILE: MSMg01no540_g16.b1 PHD_FILE: MSMg01no540_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:41 2005CHROMAT_FILE: MSMg01no540_g16.g1 PHD_FILE: MSMg01no540_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTCNNNANNTTTTTTTTTNNNNNNNNTTCTATXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATTTTGACGAC
ATTACAGTTGAAGCTCTGACATGAANGTGCTGAATCTTCTTTTTTGATTT
CATTCNGTCTTTCAACAATACCCATTACGTGCATTTTATGTTACTGCTAT
AAGGAGACAAAATCTTAAAGCCTAATAAATGGTTGTGAAAATTGTAAAGA
CTTTTGGAAAATTGGTTCGGGGCCCCCCCAAAGGGATTTGGAAATTCCCG
GGAACCCCCTTTAAAAACCTAACTCCCCGGGGGGGCCTATTTTGGAAGGG
TTGAAAAACCAACCCCCACCCTTGGGAGGCTTTTAAACACCCCCCCCCGG
GTCCCCCCGATTTTTTGGAAAAAAAAATTATAATTTTTTTTGGGGGGGAA
NNNNTTTTTTTTGNNNTTNNTAAAAAACCCCCCCCCCCCCACACCAAAAA
AAAATTTTTCCCCCCGCCTTTTTTGGGGGGGAAGAAAAAAAAAAAAAACA
CCCCCCGCTGGGGAAAATCTTTCTTGGGGGGAGAAAGGGGGGGGTGGGTT
TCCCCCCCCCCCCCCCCCCCCAAAAAAATTATTATTCCCGTCGCGGAAAA
AAAATACTC

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGGGTATGTTTTCAAGTAAAGTGGAA
ATGAACTGGCAAAGTACTCCCTAGGGAAGAAACAAAATGATAGCCAGAGC
TTTTCAACCTTTTAGGATCAAAGATCCCAGTTAAAAAAAAAAAAAAAATT
GTGATGTGTGCAATGGAGCACTCCCGCACGTAGCATCCTCTCATGGACAC
AGGCACCTAGGAGGAAGCACAAATGTGTCCACCAAGTTAATGCTTCCTCC
ACCTTCTGCTTTTGTGAGAAAAGCATCTTTTTGTTTTCAAGGAAAGAATT
AAATCTAAATGATAATAAAACTTTACTTCTTGCAAGAGGTGAAATTTTAA
ATAAAAGTTGTTATACATAATCTTTTATAATAATAAAAAAGCTTGACACA
TTTAATTTTAACATTGCCAGATGTGTAGCACTGTTTCTTTCACTGACAGT
TCTTTCTAATTGATTTTTACCATGCCACATGTTAGCAATATTCAATATGA
GTCACTTTGTTGTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTCTTCACTT
TGTAGCCTGGGCTGGCCTTGAACAAATGATCCTCCTATCTCAGTATCTCA
AAGGTGAGGTTTCAGGCATTTGCCATCATATCTGGGTCTTATTCAAAACT
TCAAACTGAAAGTGGATGATTTTAACTTCTTTTCCATCATAAAAATGAGC
TATCCTTACATGGCTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_g16.g1 MSMg01no540_g16.g1 CHROMAT_FILE:
MSMg01no540_g16.g1 PHD_FILE: MSMg01no540_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:41 2005
         (569 letters)



>mm_chr18_66962415_66963380
          Length = 966

 Score =  963 bits (498), Expect = 0.0
 Identities = 509/514 (99%), Gaps = 4/514 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgggtatgttttcaagtaaagtggaaatgaactggcaaagtactccctagggaagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgggtatgttttcaagtaaagtggaaatgaactggcaaagtactccctagggaagaaac 456

                                                                       
Query: 61  aaaatgatagccagagcttttcaaccttttaggatcaaagatcccagttaaaaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 455 aaaatgatagccagagcttttcaaccttttaggatcaaagatcccagt---aaaaaaaaa 399

                                                                       
Query: 121 aaaaattgtgatgtgtgcaatggagcactcccgcacgtagcatcctctcatggacacagg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 398 aaaaattgtgatgtgtgcaatggagcactcccgcacatagcatcctctcatggacacagg 339

                                                                       
Query: 181 cacctaggaggaagcacaaatgtgtccaccaagttaatgcttcctccaccttctgctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cacctaggaggaagcacaaatgtgtccaccaagttaatgcttcctccaccttctgctttt 279

                                                                       
Query: 241 gtgagaaaagcatctttttgttttcaaggaaagaattaaatctaaatgataataaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtgagaaaagcatctttttgttttcaaggaaagaattaaatctaaatgataataaaactt 219

                                                                       
Query: 301 tacttcttgcaagaggtgaaattttaaataaaagttgttatacataatcttttataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tacttcttgcaagaggtgaaattttaaataaaagttgttatacataatcttttataataa 159

                                                                       
Query: 361 taaaaaagcttgacacatttaattttaacattgccagatgtgtagcactgtttctttcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 taaaaaagcttgacacatttaattttaacattgccagatgtgtagcactgtttctttcac 99

                                                                       
Query: 421 tgacagttctttctaattgatttttaccatgccacatgttagcaatattcaatatgagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tgacagttctttctaattgatttttaccatgccacatgttagcaatattcaatatgagtc 39

                                             
Query: 481 actttgttgttgtttttgtttttgtttttgtttt 514
           |||||||||||||||||||||||||||| |||||
Sbjct: 38  actttgttgttgtttttgtttttgtttt-gtttt 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 966
Length adjustment: 10
Effective length of query: 559
Effective length of database: 956
Effective search space:   534404
Effective search space used:   534404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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