BAC Information

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BAC

Clone NameMSMg01-541A12
Chromosome18 (Build37)
Map Location 87,168,383 - 87,168,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541A12.T7 (MSMg01no541_a12.b1)MSMg01-541A12.TJ (MSMg01no541_a12.g1)
ACCAG607142AG607143
length746740
length of high quality
(start - end)
695 (52 - 746)393 (84 - 476)
definitionCHROMAT_FILE: MSMg01no541_a12.b1 PHD_FILE: MSMg01no541_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:31 2005CHROMAT_FILE: MSMg01no541_a12.g1 PHD_FILE: MSMg01no541_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAATCCACTTAGATTTGACATTATTACAAGGAGATAG
GAATGGATCAATTCACATTCTTCTGCATGATAACCGCCAGTTGTGCTAGC
ACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCC
TTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTC
AATTCTATTCCATTGATCTACTTTTCTGTTGCTATACCAGTATCATGCAA
TTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCATGCATGGTGATT
CCACCAGAAGTTCTTCTATCCTTAAGATTTTTTGCTATTCTAGATTTTTT
GTTATTCTAGATGAATTTGGGAATTGACCTTTCAAATTCGTTGAAGAATT
TAGTTGGAATTTTGATGGGGATTGCATTGAATCAGTAGATTGCTTTTAGC
AAGATAGACATTTTTACTATATTGGTCTTGCCAATCCATGAGCATGCGAG
ATCTTTCCATCTTCTGAGATCTTCTTCAATTTCTTTCTTCAGAGACTTGA
AGTTCTTATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCAAGG
TATTTTATATTATTTGTGACTATTGAGAAGGGTGTTGTTCCCCTAATTTC
TTTCTCAGCCTGTTTATTCTTTGTATAGAGAAAGGCCATTGACTTG
TTTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTGCAGTGGACCA
GAGTTCAGAACCAGTAACTACATCCTATAGATAGCAGCCATGTGTGACTT
CAGCTCCACGGAATCTGATGCCTCCTCTCTCCATTGCCACCTGCGCTAAT
GTGCGAATACCCACACAGAGATACACAGAAACACAGGTGTGCACTTAATT
AAAAGGAAAATAGAAACTGAAATCTTTGAGGATGTAATCATGCTGATGGA
GTGCAAACTTTGTAGGCTGCAATAAGTCCTAGTTTAAGTCTCCAAAACTG
TACGAATCTGGCTGTAGAAGCAATGCTCCTGTAACCCCTGCACCAAGCGG
TAGCAGCACAAAAATCCCAAGTTCAGTATCACCCCCTGCTTGATAATGAG
TGGAGGTGCACATTCATAAAAATATGTTCTTAAAAAAACGAGGGAACAGG
ATAAAAGTATGTATATATGCATGTATTTATGTACATGTAAATGTGTGCGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACAATGAACTAAAA
ATGGTTTATTTTTTATTAAAATTTAGATATGGATAAAAATATTAAATCCT
TGAAAATATTTCCAAACAATTTAACCTCCTAAATATATCTTCCTTCCAAA
AAGTATTAAAAGGGGGAATTTTTAAATTTTTTGGTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_a12.g1 MSMg01no541_a12.g1 CHROMAT_FILE:
MSMg01no541_a12.g1 PHD_FILE: MSMg01no541_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:31 2005
         (393 letters)



>mm_chr18_87168183_87168975
          Length = 793

 Score =  737 bits (381), Expect = 0.0
 Identities = 390/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctttgcagtggaccagagttcagaaccagtaactacatcctatagatagcagccatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgctttgcagtggaccagagttcagaaccagtaactacatcctatagatagcagccatgt 534

                                                                       
Query: 61  gtgacttcagctccacggaatctgatgcctcctctctccattgccacctgcgctaatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtgacttcagctccacggaatctgatgcctcctctctccattgccacctgcgctaatgtg 474

                                                                       
Query: 121 cgaatacccacacagagatacacagaaacacaggtgtgcacttaattaaaaggaaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cgaatacccacacagagatacacagaaacacaggtgtgcacttaattaaaaggaaaatag 414

                                                                       
Query: 181 aaactgaaatctttgaggatgtaatcatgctgatggagtgcaaactttgtaggctgcaat 240
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 413 aaactgaaatctttgaggatgtaatcatgctgatggagtgcatgctttgtaggctgcaat 354

                                                                       
Query: 241 aagtcctagtttaagtctccaaaactgtacgaatctggctgtagaagcaatgctcctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 353 aagtcctagtttaagtctccaaaactgtacgaatctggctgtagaagcaatgctcctata 294

                                                                       
Query: 301 acccctgcaccaagcggtagcagcacaaaaatcccaagttcagtatcaccccctgcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acccctgcaccaagcggtagcagcacaaaaatcccaagttcagtatcaccccctgcttga 234

                                            
Query: 361 taatgagtggaggtgcacattcataaaaatatg 393
           |||||||||||||||||||||||||||||||||
Sbjct: 233 taatgagtggaggtgcacattcataaaaatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)