NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTG
TTCTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCATT
GGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATT
GCCCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCT
TTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCGAT
GAATTTGCAATTG

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGGGGCTCTCTGTCCAGCTATTCT
TATAAAATCAGTGAATTCCAGGTTCAGCAAGATGCCCTGTCTCAAAAGCA
AATGATAAATAAATTGGGTAGAGTGTAATAGAGGAAAATACCTACTTCCA
AGCTCATGTACACAAACATGTATACTCATATACATCACAAACACAGAAGA
AAGTAATTTTTAAAAAGTGGATGCAAATCTGTAAGCAAGTAGAATAACTC
AATTAGGAACTCTACCCAAACTGAAATATTCAAAAAATAAAATTTTGTAT
TTATGATAGCTACCTGTTCTCAATTACACAGTTGAGTTTTATAAGTCAAG
TGGAAGAACAAACTAAATTGCCCAGTGTAAATTGGTGGCTAAATAAGGAA
ACAAGGCAACCAACATGCAGCAGAATATGTGCAAATATTCATTTGTGCAA
ATATATACTCAATTTGTGAGCATTTAGACCCATAATTGATATAGACCTTA
GATGTGTTATAAACTGATTACAAGTAAACCACTGAGAGCATCGAAATACA
GGGAATGTGACTCTGGAAGCAAACCACAACATGAGCTGCCTTGTTCACAT
GGGTTCCATTTAAATATTTAAATGATATTCTAAAATGAACCACTAACTCC
TGACCTACTTTCCAAAGAGCTTTGTTGAGAAGATAAAATAGGATGCACTA
CTTCTCTACAA

Query= MSMg01no541_b18.g1 MSMg01no541_b18.g1 CHROMAT_FILE:
MSMg01no541_b18.g1 PHD_FILE: MSMg01no541_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:38 2005
         (655 letters)



>mm_chr18_88829493_88830547
          Length = 1055

 Score = 1228 bits (635), Expect = 0.0
 Identities = 650/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggggctctctgtccagctattcttataaaatcagtgaattccaggttcagcaagatgc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggggctctctgtccagctagtcttataaaatcagtgaattccaggttcagcaagatgc 260

                                                                       
Query: 61  cctgtctcaaaagcaaatgataaataaattgggtagagtgtaatagaggaaaatacctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtctcaaaagcaaatgataaataaattgggtagagtgtaatagaggaaaatacctac 320

                                                                       
Query: 121 ttccaagctcatgtacacaaacatgtatactcatatacatcacaaacacagaagaaagta 180
           ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 321 ttccaagctcatgtacacaaacatgtatactcatatacatcgcatacacagaagaaagta 380

                                                                       
Query: 181 atttttaaaaagtggatgcaaatctgtaagcaagtagaataactcaattaggaactctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttaaaaagtggatgcaaatctgtaagcaagtagaataactcaattaggaactctac 440

                                                                       
Query: 241 ccaaactgaaatattcaaaaaataaaattttgtatttatgatagctacctgttctcaatt 300
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaacttaaatattcaaaaaataaatttttgtatttatgatagctacctgttctcaatt 500

                                                                       
Query: 301 acacagttgagttttataagtcaagtggaagaacaaactaaattgcccagtgtaaattgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagttgagttttataagtcaagtggaagaacaaactaaattgcccagtgtaaattgg 560

                                                                       
Query: 361 tggctaaataaggaaacaaggcaaccaacatgcagcagaatatgtgcaaatattcatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggctaaataaggaaacaaggcaaccaacatgcagcagaatatgtgcaaatattcatttg 620

                                                                       
Query: 421 tgcaaatatatactcaatttgtgagcatttagacccataattgatatagaccttagatgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaaatatatactcaatttgtgagcatttagacccataattgatatagaccttagatgt 680

                                                                       
Query: 481 gttataaactgattacaagtaaaccactgagagcatcgaaatacagggaatgtgactctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttataaactgattacaagtaaaccactgagagcatcgaaatacagggaatgtgactctg 740

                                                                       
Query: 541 gaagcaaaccacaacatgagctgccttgttcacatgggttccatttaaatatttaaatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcaaaccacaacatgagctgccttgttcacatgggttccatttaaatatttaaatga 800

                                                                  
Query: 601 tattctaaaatgaaccactaactcctgacctactttccaaagagctttgttgaga 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattctaaaatgaaccactaactcctgacctactttccaaagagctttgttgaga 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)