BAC Information

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BAC

Clone NameMSMg01-541H12
Chromosome18 (Build37)
Map Location 42,112,684 - 42,113,177
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2
Downstream geneGm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541H12.T7 (MSMg01no541_h12.b1)MSMg01-541H12.TJ (MSMg01no541_h12.g1)
ACCAG607476AG607477
length7721,488
length of high quality
(start - end)		676 (50 - 725)---
definitionCHROMAT_FILE: MSMg01no541_h12.b1 PHD_FILE: MSMg01no541_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:08 2005CHROMAT_FILE: MSMg01no541_h12.g1 PHD_FILE: MSMg01no541_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCACACTTAATTTAGGGACATTCTATCCATCTGGCTTCCA
AATACAGGGTGGACAGACAAATGCTTAACAAACCGCTTCCCTCATAAGGC
AAATCGAACAGATCCCATTATTCTCTAAGTTGCCAGTTCTTGTGGTGAGA
ATACTACTGTGTTCAAAGCCAACCTCACTATAGAGTTAGGAATAGAACCC
AGGAGCAGCCAAATATCTCCACCATCCACATAGGGCTAGTCAAAAGTAAT
CTCATTATCTATATGATAATGGACAAAGTGATATCATTAGGAAATGATGC
ATCTTGAATATTCACTGAGTTTTAGAATATAATTTCTTAGGTATAACTGC
ACAATGCTTAATGTTTAGTGATGGCCATGTTTGCAGCCAACCCCAGCACA
TCACTGAAAGCTCCTATCTTCTTGAGGGCATCTCTCTAGGAACAGCCTTA
CTCTTTCCTGCATCATCAGCACCCATACTTAAGACATCATTACACCGAGC
ACATGAGAATACTGTAATCTCTTCCACCCTAAAACAAAACAAACAAATAA
ATCACCTTTAACCCCCTGTATCCCTCCAGCCATCTCGCCTCCAACTGTAC
TCCTCAGGAGAGGGACAAACCTATGCTACCCTGAACCATTCCCACAGCTT
TGTCCTCTGCCATCACACTCAAACTACACTTGTCAAACTCCTAGTGACAA
AACTGCTAGGTTCCATCATTAA

CCTTTCTCATTCTTCTTATACCCAATAACATACTANCGGCACAAGAGNNA
GGGGAAGAGANNNNNTTTNCGGCCTTTNTNTATNNGTATTAANAAAGAGN
ANNNGGNGGNCCCCGNGGTGCCATACACAAAGGANGAGGGAANANNNNAA
ANAATTTTTTTCCACACAANGAAGAGAGGGANGNNNAGAGAGAANCGGGN
NANACAACANNNAAGAAAAGNACGNCACGCGTTNTGTCAGGATATGTCTA
CCCCTGCCGTAGAAGAGACCTGCCCGCACAGCCGAGCACCGTCTGCTATC
ATGCNTTAGTCAGTCCGCTGATATCTGTTGTGTGTGGTGGAGGGNAGAAG
GTTGCTGAGATAGTATAGAGTGTAGAGGTGTAAGAGTNTGCATGAGAGTG
ACTGCTGGGAGTGTCGTACGTGAGTCTGGGTGGCGAGCAGCNAGTCGTCT
ATNCTACGCGCGAGCATTCAGAGTNTGACGCCAGAGTCACCTGTNTCTGC
GTCTCTGCTATTGTGAGAGAGCAAGGCAGNCGTGGCTCCCGCGTGTCGGA
GTAGTGAGAGNTAGTATACTCGCAGGCTGTAGGCGAGGTAATATGAAGTC
ACANTGCTTTGAAGTCATCAGACGGCGCTGTCATCTATTCTTATTCTACG
ACGGTCACTCTATCTATTGCATTACCAACTATACGTTATATGTCTGTAGC
ACTCGCTCGNTGAGTCATTGTGATTGTGACACGTTATACGCATAATACGC
TATATATATAGTGCTCGCCAGCCGTACCATCAACATATATTGTGTGGTTT
TAATGTTTAGTTTATGCGCCCACCCCTCACGTGTTGTGTGTCTTATTCTG
AACATCCAAATACGAAGTAATACCACACTACCTCTCGACGCATTCCCACT
TTGTCTCGTTTCTGACTCCTACTATAATCGCGTCCAGTANCTCTACTTTC
CCACCGTAATATATCTTCTTTTTCATATCTTGTTATCCTTAGTAACCACC
CGTGACTACACTGCTCGGTGTTTATTATCTACGATGTCACATACTCTTTA
GTCATCATAACTCCCACTGTCTAAGTTACATCACGTCCTTGCGCAGCGCT
ACACTCGTCGCTTACCTTATCACTATACAAGTACCTATTCATTTTTGATT
GACGTTAATCTGGTATCTGACTTNTGTTATCGATCGAAAGATAGTCCGCG
ATCACACCACGCCTTTGTCGCACGTTANATCACAACAATAATGATGCAGG
ACGCTCGCGTCACATCACACCTATATCTCTATACTAAAGTATCTGTTATA
TTATTCTCTACGTTCAACCACTTCAAAACTTATAATATATTCTATTATAC
GCAATGCCCGCTGTATCGTACTGACCATGTGAATANAATATCGATCGACT
ATGTAACGAGACTACCATACAATCGTTATTTCTCTATAATCTATATCATG
TGTGAGCATCGTTCTACTACGATANGTGTCAGTGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_h12.b1 MSMg01no541_h12.b1 CHROMAT_FILE:
MSMg01no541_h12.b1 PHD_FILE: MSMg01no541_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:08 2005
         (676 letters)



>mm_chr18_42112480_42113550
          Length = 1071

 Score =  864 bits (447), Expect = 0.0
 Identities = 482/499 (96%), Gaps = 13/499 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccacacttaatttagggacattctatccatctggcttccaaatacagggtgga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccacacttaatttagggacattctatccatctggcttccaaatacagggtgga 264

                                                                       
Query: 65  cagacaaatgcttaacaaaccgcttccctcataaggcaaatcgaacagatcccattattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagacaaatgcttaacaaaccgcttccctcataaggcaaatcgaacagatcccattattc 324

                                                                       
Query: 125 tctaagttgccagttcttgtggtgagaatactactgtgttcaaagccaacctcactatag 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 tctaagttgccagttcttgtggtgagaatactactgtgtttaaagccaacctcactatag 384

                                                                       
Query: 185 agttaggaatagaacccaggagcagccaaatatctccaccatccacatagggctagtcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttaggaatagaacccaggagcagccaaatatctccaccatccacatagggctagtcaa 444

                                                                       
Query: 245 aagtaatctcattatctatatgataatggacaaagtgatatcattaggaaatgatgcatc 304
           |||||||||||  ||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtaatctca--at--ata-gataatggacaaagtgatatcattaggaaatgatgcatc 499

                                                                       
Query: 305 ttgaatattcactgagttttagaatataatttcttaggtataactgcacaatgcttaatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgaatattcactgagttttagaatataatttcttaggtataactgcacaatgcttaatg 559

                                                                       
Query: 365 tttagtgatggccatgtttgcagccaaccccagcacatcactgaaagctccta---tctt 421
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 560 tttggtgatggccatgtttgcagccaaccccagcacatcactgaaagctcctaccttctt 619

                                                                       
Query: 422 -----cttgagggcatctctctaggaacagccttactctttcctgcatcatcagcaccca 476
                ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 tcctacttgaaggcatctctctaggaacagccctactctttcctgcatcatcagcaccca 679

                              
Query: 477 tacttaagacatcattaca 495
           |||||||||||||||||||
Sbjct: 680 tacttaagacatcattaca 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1071
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1061
Effective search space:   706626
Effective search space used:   706626
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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