Query= MSMg01no541_o12.b1 MSMg01no541_o12.b1 CHROMAT_FILE:
MSMg01no541_o12.b1 PHD_FILE: MSMg01no541_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:44 2005
(706 letters)
>mm_chr18_57293577_57294680
Length = 1104
Score = 1332 bits (689), Expect = 0.0
Identities = 699/703 (99%), Gaps = 2/703 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttggtcttgtaaacaaaacaaaagctctgtgcttgcgcactgactccttaga 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggaattccttggccttgtaaacaaaacaaaagctctgtgcttgcgcactgactccttaga 845
Query: 64 acatgacagtcagactggtgggatttctgggtaatgtcatgtggcctgatctatttagcc 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 acatgccagtcagactggtgggatttctgggtaatgtcatgtggcctgatctatttagcc 785
Query: 124 atcaggaccgaaggtttttcatttgagaatactgtatacaaagtaagacctggtgtaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 atcaggaccgaaggtttttcatttgagaatactgtatacaaagtaagacctggtgtaaag 725
Query: 184 gatcaagaatggcattctccgccttggcacagcatggctattattggccaagagcagaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gatcaagaatggcattctccgccttggcacagcatggctattattggccaagagcagaaa 665
Query: 244 taatgcctcattcaggccaataaaatcccaggctttcattgttcctttaaaaacgtaggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 taatgcctcattcaggccaataaaatcccaggctttcattgttcctttaaaaacgtaggg 605
Query: 304 gttcgtgtgaggttatgtgtgaaagaagctgcgagcatggttccccatatttcttttatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gttcgtgtgaggttatgtgtgaaagaagctgcgagcatggttccccatatttcttttatt 545
Query: 364 cagtagggccattcaggaaagtacttccagaaaaaaaaaatagagagacaaaatgttttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cagtagggccattcaggaaagtacttccagaaaaaaaaaatagagagacaaaatgttttc 485
Query: 424 ccaaatcagatgtttaaaaagtcctggcatgaagaggtttaaaagaaaaaggccaacaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccaaatcagatgtttaaaaagtcctggcatgaagaggtttaaaagaaaaaggccaacaag 425
Query: 484 cgtacactttccttaaacaagtaaatgcagctttaagattggcccctttcagcattacac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cgtacactttccttaaacaagtaaatgcagctttaagattggcccctttcagcattacac 365
Query: 544 agggaatgaggcattctgacaaggaccctatggtttgtgaacctgcctgtaaccgccccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 364 agggaatgaggcattctgacaaggaccctatggtttgtgaacctgcctgtaaccg--ccc 307
Query: 604 ccccacccgcacccctaaaggcaggaagagaggcatcccctgctggcaaacacaaactga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccccacccgcacccctaaaggcaggaagagaggcatcccctgctggcaaacacaaactga 247
Query: 664 gtatcaagaactaaagaaagaaaagtttaggaaactagtctag 706
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtatcaagaactaaagaaagaaaagtttaggaaactagtctag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1104
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1094
Effective search space: 761424
Effective search space used: 761424
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_o12.g1 MSMg01no541_o12.g1 CHROMAT_FILE:
MSMg01no541_o12.g1 PHD_FILE: MSMg01no541_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:44 2005
(666 letters)
>mm_chr18_57129277_57130343
Length = 1067
Score = 1091 bits (564), Expect = 0.0
Identities = 603/616 (97%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 52 ttatttatttatttatttatttatttatttatgaagatttcacaagcatagatcccaaag 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttatttatttatttatttatttatttatttatgaagatttcacaagcatagatcccaaag 311
Query: 112 agaaacacagctgccactaacatgttctaaggtacaaagaaactcatctctttgagcctt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agaaacacagctgccactaacatgttctaaggtacaaagaaactcatctctttgagcctt 371
Query: 172 agttttgccaactgtgaaatggaaattctactatttgtcctgatctctcattttccagag 231
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 372 agttttgccaactgtgaaatggaaattctactatttgttctgatctctcattttccagag 431
Query: 232 actcaagagaggcatgttcacaggttttaggtctcaaatgtccttgtgacccaagaaaga 291
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 432 actcaagagaagcatgttcacaggttttaggtctcaaatgtctttgtgacccaagaaaga 491
Query: 292 gcaatcccacactgaagaaatggcataggaatggcccatgcctgcacaaggccttgaaca 351
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gcaatcccacactgaagaactggcataggaatggcccatgcctgcacaaggccttgaaca 551
Query: 352 attttctgtctttggaagctgaaaatatgcagctctttggagaagctcagcat-cctttt 410
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 552 attttctgtctttggaagctgaaaatatgcagctctttggagaagctcagaattcctttt 611
Query: 411 gagatccatgcacaagtgcaaccattgcttactgtcaactgttctctctctctttactca 470
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gagatccatgcacaagtgtaaccattgcttactgtcaactgttctctctctctttactca 671
Query: 471 tacctgggaagcagtggtttcagaaaccactacactgggaagtggggagctgatagcaga 530
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 672 taactgggaagcagtggtttcagaaaccactacactgagaagtggggagctgatagcaga 731
Query: 531 gtggtcgagcattcatccggaaactgtttaatcataggagttggacattctattagacat 590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gtggtcaagcattcatccggaaactgtttaatcataggagttggacattctattagacat 791
Query: 591 acttaaaatgttattttaaacgacatatcctactcatctcggtattcctccccttgtgcg 650
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 792 acttaaaatgttattttaaatgacctatcctactcatctcggcattcctccccttgtgcg 851
Query: 651 gaagcactgtcgcctt 666
||||||||||||||||
Sbjct: 852 gaagcactgtcgcctt 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
