BAC Information

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BAC

Clone NameMSMg01-543F22
Chromosome18 (Build37)
Map Location 89,895,768 - 89,896,391
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F22.T7 (MSMg01no543_f22.b1)MSMg01-543F22.TJ (MSMg01no543_f22.g1)
ACCAG608921AG608922
length742732
length of high quality
(start - end)		628 (48 - 675)504 (82 - 585)
definitionCHROMAT_FILE: MSMg01no543_f22.b1 PHD_FILE: MSMg01no543_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:43 2005CHROMAT_FILE: MSMg01no543_f22.g1 PHD_FILE: MSMg01no543_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGGATGGTCTGGTAAACTAAAAAGTCTGTGGATTCTTGGAG
GAATGTTCCAAGTTTTATAAGGCAGAAAAAAAGAGAATTCTTTAAAAACT
ATGTGAAAGTATCCTTGCAATACTCTTTAATGATGTTGGTCTTGAACCTA
TATTTTACTGTCCTCTGCTTCCCTTATAGGGAAATGAGTTGTATGGTGTC
TTTATTGTGTACATATGAATGTATGTGCATTCTAAATTAGACAGTCACAT
CATCACTAAACAACTGAGTTTTATATATATATAATATATATTCTATCCAT
ATGGCCAGAATATCCTTACATATTAAATGACTATAAAATAGATAAAATAG
TATGAAATTTTAGATAAGATTAAGTATTATTAGATAAGATTAAGTATTAT
TATCACATTTTAGTGAATATATCTCAAAATCTTTTATTTTTCTAATTCTT
TTGCCTACCATATTTAAAATTCATTATTTTAAATAATACAAACAATTACA
TATTTAAAAGCCATACTTTTTTACCTCTTGTTCCCCCTCTCCTTTTTGAT
TTTCATCCCCCTGAGGTGCATCTTCATTTTCTCTTGGTTAAAAGTGTATT
ATTTATAGCCTATGGGTAAAAATGTTCAGGAGAATGTCTTTTTATTTCCT
GCTGAGACAACTAACACACATTTTTTAGTTATGTCTCTCCTN

TTCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCTGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATAAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGG
AAGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACT
GGTAAGAAGGACACATGCTCCCCTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AAAAAACATGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCTAATGGTCGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAATCCAATCACAAAAGAACTTAAATGATATGTTCTCAC
TGATAAGTGGATATTAGCCCATAAACGTATAATACCCAAGATATAAGATA
CAATTTGCTAAACACATGAAACTCTAGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f22.b1 MSMg01no543_f22.b1 CHROMAT_FILE:
MSMg01no543_f22.b1 PHD_FILE: MSMg01no543_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:43 2005
         (628 letters)



>mm_chr18_89895439_89896466
          Length = 1028

 Score = 1207 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatggatggtctggtaaactaaaaagtctgtggattcttggaggaatgttccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 gaattcaatggatggtctggtaaactaaaaagtctgtggattcttggaggaatgttccaa 894

                                                                       
Query: 65  gttttataaggcagaaaaaaagagaattctttaaaaactatgtgaaagtatccttgcaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gttttataaggcagaaaaaaagagaattctttaaaaactatgtgaaagtatccttgcaat 834

                                                                       
Query: 125 actctttaatgatgttggtcttgaacctatattttactgtcctctgcttcccttataggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 actctttaatgatgttggtcttgaacctatattttactgtcctctgcttcccttataggg 774

                                                                       
Query: 185 aaatgagttgtatggtgtctttattgtgtacatatgaatgtatgtgcattctaaattaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aaatgagttgtatggtgtctttattgtgtacatatgaatgtatgtgcattctaaattaga 714

                                                                       
Query: 245 cagtcacatcatcactaaacaactgagttttatatatatataatatatattctatccata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cagtcacatcatcactaaacaactgagttttatatatatataatatatattctatccata 654

                                                                       
Query: 305 tggccagaatatccttacatattaaatgactataaaatagataaaatagtatgaaatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tggccagaatatccttacatattaaatgactataaaatagataaaatagtatgaaatttt 594

                                                                       
Query: 365 agataagattaagtattattagataagattaagtattattatcacattttagtgaatata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agataagattaagtattattagataagattaagtattattatcacattttagtgaatata 534

                                                                       
Query: 425 tctcaaaatcttttatttttctaattcttttgcctaccatatttaaaattcattatttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tctcaaaatcttttatttttctaattcttttgcctaccatatttaaaattcattatttta 474

                                                                       
Query: 485 aataatacaaacaattacatatttaaaagccatacttttttacctcttgttccccctctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aataatacaaacaattacatatttaaaagccatacttttttacctcttgttccccctctc 414

                                                                       
Query: 545 ctttttgattttcatccccctgaggtgcatcttcattttctcttggttaaaagtgtatta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctttttgattttcatccccctgaggtgcatcttcattttctcttggttaaaagtgtatta 354

                                   
Query: 605 tttatagcctatgggtaaaaatgt 628
           ||||||||||||||||||||||||
Sbjct: 353 tttatagcctatgggtaaaaatgt 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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