BAC Information

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BAC

Clone NameMSMg01-543N19
Chromosome18 (Build37)
Map Location 87,143,858 - 87,144,232
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543N19.T7 (MSMg01no543_n19.b1)MSMg01-543N19.TJ (MSMg01no543_n19.g1)
ACCAG609297AG609298
length772772
length of high quality
(start - end)		655 (48 - 702)455 (80 - 534)
definitionCHROMAT_FILE: MSMg01no543_n19.b1 PHD_FILE: MSMg01no543_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:21 2005CHROMAT_FILE: MSMg01no543_n19.g1 PHD_FILE: MSMg01no543_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCCACTCAAACTGCATAGTCTAAGATATAGTTGATAATTTTA
GAACAGCTTTTAAACCACTGTCACAATCCATTGTAAAATATTGCCAACAC
ATGAGAGACATTTTACATCATTTTCTAACCCTGAACATACAGAGATCTAA
TACACTTTGTCTAGTACCTACCTGTATTAGTTAGGGTTTCTATTCCTACA
CAAAACATCATTACCAAAAAGCAAGTTTGGAAGGATAGGATTTATTCAAC
TTACACTTCCATACCATCACCAAAGGAAGTCAAGACTGGAACTCACAAAA
GGCAGGAAGTAGGGGCTGATGCAGAGGCCATGGAAGGATGTTATTGATTG
GCTTGCTTCCCCTGACTTGCTAAGCTTTCTTTTTTTATAGAATTCAAGAC
AACCCACCCAGAGATGGTAACACCCACAAGGGACATTGCACTCTTGATCA
CTAATTAAGAAAATGCTTTACAGCTGGATCTCATGGAGGCATTTTCTCAC
CTGAAGCTCCTTTCTGTGTGATAACTCCAGCTTGTGTCAAGTTGACACAA
AAACCAGCCAGTACACTACCCCAAGGCTATAACATACTATATCTGCATTT
ATTTGATTATTTTGTAGACAAAATTTTCATGAATATTTTTCCTATAAAAC
TGTTTAATATGCACATACATACATAAACTCTCACATATACATATATGGAC
ATTCATGTCTGAAATACATATT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCATAAAATTGATTTACT
GTGGATCTTTGAATAAAAATTACCTCATAGGCTGATATGTTTGAATATAT
GGTCTCTAGTTGGTGGAACTGTTTAGGAAGGATTAGGCGGTCTCCCACAT
GTTGCAGGAGTTGTATCACTGGGGGAAGGTAGTGGAGGTTTGAAAAGATT
GGTTCCTTTGTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTC
TAAGTCTGTCTCTCTTGCTCTCTCTCCCTCCCCCTCCCTCTCTCTTTCTC
TCTTTGTATGCATGTGTATGTGTGCACGTGTGCATGTGTGTATGTTTTCT
TTTTCTACATTACAAGCTAAGCTCTCAGTTGCTGGTTTAGCACCATGTCT
ATGCTCCCTGCCTTGATGGTCATGGACCTTAATTCTTCTATACAGTAAAC
CCCCAAAGAAACTCTTCTGTAACTTGTTTGCCCATGGTGTTTTATCTCAG
AATAATTAAATCTGCCAATTAGCATATTTCAAAAGTCATGGATTCTTTGT
TCAAGTAGACAAATGTTTCCCCAATGCACTTTTGTGATAATTTAGGTAAA
CAAATGTTGGAAAAAATATAATGCTCCCTATCTTAAAGTGGTGGCTCAGG
CCTATTAATTCCAGCACATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_n19.b1 MSMg01no543_n19.b1 CHROMAT_FILE:
MSMg01no543_n19.b1 PHD_FILE: MSMg01no543_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:21 2005
         (655 letters)



>mm_chr18_87143858_87144912
          Length = 1055

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/375 (98%), Gaps = 7/375 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccactcaaactgcatagtctaagatatagttgataattttagaacagctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gaattcacccactcaaactgcatagtctaagatatagttgataattttagaacagctttt 316

                                                                       
Query: 65  aaaccactgtcacaatccattgtaaaatattgccaacacatgagagacattttacatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaaccactgtcacaatccattgtaaaatattgccaacacatgagagacattttacatcat 256

                                                                       
Query: 125 tttctaaccctgaacatacagagatctaatacactttgtctagtacctacctgtattagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttctaaccctgaacatacagagatctaatacactttgtctagtacctacctgtattagt 196

                                                                       
Query: 185 tagggtttctattcctacacaaaacatcattaccaaaaagcaagtttggaaggataggat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tagggtttctattcctacacaaaacatcattaccaaaaagcaagtttggaaggataggat 136

                                                                       
Query: 245 ttattcaacttacacttccatac-------catcaccaaaggaagtcaagactggaactc 297
           |||||||||||||||||||||||       ||||||||||||||||||||||||||||||
Sbjct: 135 ttattcaacttacacttccatacttctgttcatcaccaaaggaagtcaagactggaactc 76

                                                                       
Query: 298 acaaaaggcaggaagtaggggctgatgcagaggccatggaaggatgttattgattggctt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  acaaaaggcaggaagtaggggctgatgcagaggccatggaaggatgttattgattggctt 16

                          
Query: 358 gcttcccctgacttg 372
           |||||||||||||||
Sbjct: 15  gcttcccctgacttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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