TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTGAGGCATTTTCTCACAAACATTTCCAGGAATTCTCATGCTACCTG
GCAAGCATAACCAAACCAAGAAACAGGATGCCTTAATTAGCTAGACAAGA
GAAAATTAAGACTGGTTTCAGTTTTTCTGCAATCTATCGGTAATGTAGTC
AGAGAAGGAAAAAAAAAACCAAAAAAAAAAAACCTCTGCCAGCACACAGG
CAGGAAACAGTAAAACTTGTGCCAACATTATGTAATCATCTGCCTGCCTT
AACTACGAAAACCCATAATTTTAAAATCCACAGTTATGCTGAAAATAACT
GAATGTGTGTGTGTGTGTGAATTTTAACTCAGCCTAAATGTTCTTTCTAT
TAGTTTAGCTAATGAAACTATAATCTATTAAAAAATATGTCATATGGCTA
CATTGCTGTTATATATGAGACAAAGTTAAAAATACAATGATTTTTAACTG
TCGTTTTCTAGAATAATATAATTATTTTTTACAAATAGTATAATTATTTT
GAGTTAGATTTTTAAGTTAGCAAGCAAAGTAATGCATTACATGATGACGT
TTTCAGTAATATATACCATTGTTCTTTCTTCTTATCCATCTTCCTTCCAT
AGCATCCTCCCTAACTCTCCTGTCTCCCACACCTCCACTTTTCCCTCATA
TTGTTCACATGGACTCCAATGCACTTAGTTTN

ATGAAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCACTTCTCTCCCTGTGTCTTCTGTCT
ATCTCTCTGTAGCTTATGGTTTCTAGCCTGTTTGTAATCAACTGTTTCTT
GTATAATTCTCAATCTGTTTCTATCTGAATGCTCTCCGTCTTGTAAGTCT
GTTCATAACAAAGGACTTTGGTCTTTTTTCTATTGAACAGCACATATGAG
CTATTACATGTGTTTTATTGAACAGCACCACATGAGTAATACTTCACAGA
AACTTTTAATAGAGTTTTACAAGGGAGTACATTATTAACTCCCACTGGCC
CCAAAGCACTATGAGCAAACATTCACTTATCAAATAATATCCGTCTGCTG
CTTCCTGCAATAATGGGGGATATCTATTAGATAAGGTTTGCTGTCAACAT
ATTTTCTTTTTTCCAGTACTATATATATATCTACATACACACACACATAC
ACAAATGCATTGCCCATGTGTGAGGGCAGAGATGAATATACAACTTAAGA
TTAAAACTAGGCCTTAGTTTAGGTTTTATAAATTGGTTCCATGAGGCATC
CAAGGCGAGTATGGTTGCTGATTCTACTGTTCTCTTAAAGACATGCTAAA
CAAATGACCAACTACACATAAAAACATCGGTCTTAAGTCTTAAGTGACCC
CAACATGCATTATTAACTCAGCAGTAAAGTCCAGCAAN

Query= MSMg01no546_d06.b1 MSMg01no546_d06.b1 CHROMAT_FILE:
MSMg01no546_d06.b1 PHD_FILE: MSMg01no546_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:25 2005
         (681 letters)



>mm_chr18_52114252_52115330
          Length = 1079

 Score = 1135 bits (587), Expect = 0.0
 Identities = 665/719 (92%), Gaps = 47/719 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattgaggcattttctcacaaacatttccaggaattctcatgctacctggcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaattccattgaggcattttctcacaaacatttccaggaattctcatgctacctggcaag 224

                                                                       
Query: 65  cataaccaaaccaagaaacaggatgccttaattagctagacaagagaaaattaagactgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cataaccaaaccaagaaacaggatgccttaattagctagacaagagaaaattaagactgg 284

                                                                       
Query: 125 tttcagtttttctgcaatctatcggtaatgtagtcagagaaggaaaaaaaaaaccaaaaa 184
           ||||||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 285 tttcagtttgtctgcaatctatcggtaatgtagtcagagaagaaaaaaaaaaa--aaaaa 342

                                                                       
Query: 185 aaaaaaa--------------cctctgccagcacacaggcaggaaacagtaaaacttgtg 230
           |||||||              |||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaaaaaaaaaaaaaaaaaaacctctgccagcacacaggcaggaaacagtaaaacttgtg 402

                                                                       
Query: 231 ccaacattatgtaatcatctgcctgccttaactacgaaaacccataattttaaaatccac 290
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 403 ccaacattatgtaatcatctgcctgccttaactatgaaaacccataattttaaaatccac 462

                                                                       
Query: 291 agttatgctgaaaataactgaatgtgtgtgtgtgtgtg---------------------- 328
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 463 agttatgctgaaaataactgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 522

                                                                       
Query: 329 ------aattttaactcagcctaaatgttctttctattagtttagctaatgaaactataa 382
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgtgtgaattttaactcagcctaaatgttctttctattagtttagctaatgaaactataa 582

                                                                       
Query: 383 tctattaaaaaatatgtcatatggctacattgctgttatatatgagacaaagttaaaaat 442
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tctattaaaaaat--gtcatatggctacattgctgttatatatgagacaaagttaaaaat 640

                                                                       
Query: 443 acaatgatttttaactgtcgttttctagaataatataattattttttacaaatagtataa 502
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 641 acaatgatttttaactgtcgttttctagaataatataattattttt-acaaatagtataa 699

                                                                       
Query: 503 ttattttgagttagatttttaagttagcaagcaaagtaatgcattacatgatgacgtttt 562
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 700 ttattttgagttagatttttaaattagcaagcaaagtaatgcattacatgatgacatttt 759

                                                                       
Query: 563 cagtaatatataccattgttctttcttcttatccatcttccttccatagcatcctcccta 622
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cagtaatatataccattgttttttcttcttatccatcttccttccatagcatcctcccta 819

                                                                      
Query: 623 actctcctgtctcccacacctccacttttccctcatattgttcacatggactccaatgc 681
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 actctcctgtctcccccacctccacttttccctcatattgttcacatggactccaatgc 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1079
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1069
Effective search space:   717299
Effective search space used:   717299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)