Query= MSMg01no546_m10.b1 MSMg01no546_m10.b1 CHROMAT_FILE:
MSMg01no546_m10.b1 PHD_FILE: MSMg01no546_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:11 2005
(678 letters)
>mm_chr18_61988661_61989738
Length = 1078
Score = 1205 bits (623), Expect = 0.0
Identities = 665/680 (97%), Gaps = 6/680 (0%)
Strand = Plus / Minus
Query: 1 attcccattctctttcgnaa-tactgggcaggtcaaatgtttattatgtatatatggaaa 59
|||||||||||| || | || ||||||||| |||||||||||||||||||||||||||||
Sbjct: 720 attcccattctcatt-ggaagtactgggcacgtcaaatgtttattatgtatatatggaaa 662
Query: 60 gacctattaatttagaaacaagatctccaaggactgggttggttgtccaaaatctatcac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gacctattaatttagaaacaagatctccaaggactgggttggttgtccaaaatctatcac 602
Query: 120 agtgattgacatgggatgaatcccctccacaatactgaggctgagcttgttcccgtcctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 601 agtgattgacatgggatgaatcccctccacaatactgaggctgagcttgttcctgtcttg 542
Query: 180 tgtatatttgaaaacttgtagagggagggaatctcactatcagatgagcaagaacattca 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 tgtatatttgaaaacttgtagagggagagaatctcactatcagatgagcaagaacattca 482
Query: 240 attaatgaaagtcagttttccctccctggaatggttgcccgaaagcaccttccctcagag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attaatgaaagtcagttttccctccctggaatggttgcccgaaagcaccttccctcagag 422
Query: 300 agtgcagaaatgcgcacagcatgtctcagccttctattccatctttagggactaattttg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtgcagaaatgcgcacagcatgtctcagccttctattccatctttagggactaattttg 362
Query: 360 ggtaccctccctgctctgtttaccatcctcctctgggtaaccttcacattgtaattgtaa 419
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 ggtaccctccctactctgtttaccatcctcctctgggtacccttcacattgtaattgtaa 302
Query: 420 aagacaaataaacaaacaaaaacaagataggatccaaccagcctctgtgttgggtattta 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 301 aagacaaataaacaaacaaaaacaatataggatccaaccagcctctgtgttgggtattta 242
Query: 480 aatgggagtgaggggg-gaaaatgattatattcctccctgggtgtctacgttagggttac 538
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatgggagtgagggggcg-aaatgattatattcctccctgggtgtctacgttagggttac 183
Query: 539 tattgctatggtaaaacaccatgaccaaaaccaacttggagaagaaatggtttatttcac 598
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tattgctatggtaaa--accatgaccaaaaccaacttggagaagaaatggtttatttcac 125
Query: 599 tcacagttccatataacagttcatcaaaagcagtaagggcaggaacacaagcagggcagg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tcacagttccatataacagttcatcaaaagcagtaagggcaggaacacaagcagggcagg 65
Query: 659 aacctggaggcaggaaccag 678
||||||||||||||||||||
Sbjct: 64 aacctggaggcaggaaccag 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_m10.g1 MSMg01no546_m10.g1 CHROMAT_FILE:
MSMg01no546_m10.g1 PHD_FILE: MSMg01no546_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:11 2005
(615 letters)
>mm_chr18_61821214_61822232
Length = 1019
Score = 1035 bits (535), Expect = 0.0
Identities = 587/619 (94%), Gaps = 24/619 (3%)
Strand = Plus / Plus
Query: 1 agcagggcatacccatcccaagaagctgtgtggagttatagcagctacttttttcttaca 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agcagggcatacccaccccaagaagctgtgtggggttatagcagctacttttttcttaca 260
Query: 61 taatccctgtgtgtcagtcattactccatgggtttcaaaggcttccactcctctaatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatccctgtgtgtcagtcattactccatgggtttcaaaggcttccactcctctaatcca 320
Query: 121 aacggctcaataaaccatccttgttaagtaccttaatctcccaactttgcagatgtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aacggctcaataaaccatccttgttaagtaccttaatctcccaactttgcagatggagct 380
Query: 181 atggaggctcaaggaaccccagttgcttccagggaaaaaaggaaaaag----aaaaaaaa 236
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atggaggctcaaggaaccccagttgcttccagggaaaaaaggaaaaagaaaaaaaaaaaa 440
Query: 237 aagcaagattcagaaccaagtagcctgtagctgacctggccctgtgatcccacctccctg 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aagcaagattcagaaccaagtagcctgtagctgacctggccctgtgaccccacctccctg 500
Query: 297 tgacttcatgctatttttatagcaccttgattataactgcctcgttccttcatcttggac 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacttcacgctatttttatagcaccttgattataactgcctcgttccttcatcttggac 560
Query: 357 gtgggggacacctccaccctccagcctccgcaaaactctgtatctgcaacagacccaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggggacacctccaccctccagcctccgcaaaactctgtatctgcaacagacccaaaa 620
Query: 417 agtagttgagggagctgggctgtgtgggccaggagagtggacaaggtccaactgtgcatc 476
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 agtagttgagggagctgggttgtgtgagccaggagagtggacaaggtccaactgtgcatc 680
Query: 477 aggcatggctcaacccagagcaaaggtttgtggcggtgctgggagactgccaccaacaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcatggctcaacccagagcaaaggtttgtggcggtgctgggagactgccaccaaca-- 738
Query: 537 gccttttgcgagcaggaaaacggctggccctagagccctcgaaatgtgattcctgtgggg 596
|| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ------------------aatggctggccctagagccctcgaaatgtgattcctgtgggg 780
Query: 597 cctgtctaaacaggctgtt 615
|||||||||||||||||||
Sbjct: 781 cctgtctaaacaggctgtt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1019
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1009
Effective search space: 610445
Effective search space used: 610445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
