Query= MSMg01no546_o10.b1 MSMg01no546_o10.b1 CHROMAT_FILE:
MSMg01no546_o10.b1 PHD_FILE: MSMg01no546_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(689 letters)
>mm_chr18_61988657_61989745
Length = 1089
Score = 1236 bits (639), Expect = 0.0
Identities = 673/685 (98%), Gaps = 4/685 (0%)
Strand = Plus / Minus
Query: 5 gaattcccattctctttggaagtactgggcaggtcaaatgtttattatgtatatatggaa 64
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 726 gaattcccattctcattggaagtactgggcacgtcaaatgtttattatgtatatatggaa 667
Query: 65 agacctattaatttagaaacaagatctccaaggactgggttggttgtccaaaatctatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agacctattaatttagaaacaagatctccaaggactgggttggttgtccaaaatctatca 607
Query: 125 cagtgattgacatgggatgaatcccctccacaatactgaggctgagcttgttcccgtcct 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 606 cagtgattgacatgggatgaatcccctccacaatactgaggctgagcttgttcctgtctt 547
Query: 185 gtgtatatttgaaaacttgtagagggagggaatctcactatcagatgagcaagaacattc 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 546 gtgtatatttgaaaacttgtagagggagagaatctcactatcagatgagcaagaacattc 487
Query: 245 aattaatgaaagtcagttttccctccctggaatggttgcccgaaagcaccttccctcaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aattaatgaaagtcagttttccctccctggaatggttgcccgaaagcaccttccctcaga 427
Query: 305 gagtgcagaaatgcgcacagcatgtctcagccttctattccatctttagggactaatttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gagtgcagaaatgcgcacagcatgtctcagccttctattccatctttagggactaatttt 367
Query: 365 gggtaccctccctgctctgtttaccatcctcctctgggtaaccttcacattgtaattgta 424
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 366 gggtaccctccctactctgtttaccatcctcctctgggtacccttcacattgtaattgta 307
Query: 425 aaagacaaataaacaaacaaaaacaagataggatccaaccagcctctgtgttgggtattt 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 306 aaagacaaataaacaaacaaaaacaatataggatccaaccagcctctgtgttgggtattt 247
Query: 485 aaatgggagtgaggggg-gaaaatgattatattcctccctgggtgtctacgttagggtta 543
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaatgggagtgagggggcg-aaatgattatattcctccctgggtgtctacgttagggtta 188
Query: 544 ctattgctatggtaaaacaccatgaccaaaaccaacttggagaagaaatggtttatttca 603
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctattgctatggtaaa--accatgaccaaaaccaacttggagaagaaatggtttatttca 130
Query: 604 ctcacagttccatataacagttcatcaaaagcagtaagggcaggaacacaagcagggcag 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctcacagttccatataacagttcatcaaaagcagtaagggcaggaacacaagcagggcag 70
Query: 664 gaacctggaggcaggaaccaggagc 688
|||||||||||||||||||||||||
Sbjct: 69 gaacctggaggcaggaaccaggagc 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o10.g1 MSMg01no546_o10.g1 CHROMAT_FILE:
MSMg01no546_o10.g1 PHD_FILE: MSMg01no546_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(538 letters)
>mm_chr18_61821214_61822155
Length = 942
Score = 967 bits (500), Expect = 0.0
Identities = 527/538 (97%), Gaps = 4/538 (0%)
Strand = Plus / Plus
Query: 1 agcagggcatacccatcccaagaagctgtgtggagttatagcagctacttttttcttaca 60
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agcagggcatacccaccccaagaagctgtgtggggttatagcagctacttttttcttaca 260
Query: 61 taatccctgtgtgtcagtcattactccatgggtttcaaaggcttccactcctctaatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatccctgtgtgtcagtcattactccatgggtttcaaaggcttccactcctctaatcca 320
Query: 121 aacggctcaataaaccatccttgttaagtaccttaatctcccaactttgcagatgtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 aacggctcaataaaccatccttgttaagtaccttaatctcccaactttgcagatggagct 380
Query: 181 atggaggctcaaggaaccccagttgcttccagggaaaaaaggaaaaag----aaaaaaaa 236
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atggaggctcaaggaaccccagttgcttccagggaaaaaaggaaaaagaaaaaaaaaaaa 440
Query: 237 aagcaagattcagaaccaagtagcctgtagctgacctggccctgtgatcccacctccctg 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aagcaagattcagaaccaagtagcctgtagctgacctggccctgtgaccccacctccctg 500
Query: 297 tgacttcatgctatttttatagcaccttgattataactgcctcgttccttcatcttggac 356
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacttcacgctatttttatagcaccttgattataactgcctcgttccttcatcttggac 560
Query: 357 gtgggggacacctccaccctccagcctccgcaaaactctgtatctgcaacagacccaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggggacacctccaccctccagcctccgcaaaactctgtatctgcaacagacccaaaa 620
Query: 417 agtagttgagggagctgggctgtgtgggccaggagagtggacaaggtccaactgtgcatc 476
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 agtagttgagggagctgggttgtgtgagccaggagagtggacaaggtccaactgtgcatc 680
Query: 477 aggcatggctcaacccagagcaaaggtttgtggcggtgctgggagactgccaccaaca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcatggctcaacccagagcaaaggtttgtggcggtgctgggagactgccaccaaca 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 942
Length adjustment: 10
Effective length of query: 528
Effective length of database: 932
Effective search space: 492096
Effective search space used: 492096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
