BAC Information

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BAC

Clone NameB6Ng01-002B03
Chromosome19 (Build37)11 (Build37)
Map Location 50,297,937 - 50,299,08066,321,179 - 66,321,516
singlet/doubletsingletsinglet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002B03.bB6Ng01-002B03.g
ACCDH840206DH840207
length1,135432
definitionDH840206|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B03, 5' end.DH840207|Mus musculus domesticus DNA, BAC clone: B6Ng01-002B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,297,937 - 50,299,080)(66,321,179 - 66,321,516)
sequence
gaattcaatgacctaaacaagacagacatggggcaagaatagggagagaa
gcctaatttatttccttatcttacattcttttttgccttgaacaaaacca
aaatattggcttatgttgaaatggtttaggaagaaagattcaaagaggaa
aatgttttttatgaaaaaggcagaattttagggtacattttctcttacat
ttccttctagcagatatttttgttctgtatgaagaatggatactgcacag
agccatagttcttccagtgatataacatgccaacttactttgcaaattct
ccttcagtatagtaaatgatcaagaattaggcttcagaaagagggatgtg
atggatgacaaaatctcaaggtaggtctttctgtgagtatctttctgggt
atcagtcccaagttcagggtagagataaggcagttttgttgttgcagtta
catatcactgacataagagcatacaggggaagcccctgtagaacgtccat
gagttctgttattgctgaagctctgataccctccaataagtgcaaagagc
taaaatgctggctcttggtctttcttgctcatcaacaagagaaagcaatg
ttgggttacttgtttgacaactggcaggctttctcaacacctctaattca
gagaacatctctagtggtctaccattagaagagactgacctggttatggt
ctgagatgcatgtgtagcctgtgtctcacataagtcactcacattttgat
gacactatacatgtgagctgttacagtcacatagccaaaatagccccagc
gccccaatttatatatgtttcaagtttttagtttttaacatttacataaa
tatatatttattgcttcctattccgaaatagataaaaaagagggaaagaa
caaagaaaatatggttgtcttattagacttcttaataatttttcactttg
acccgctcattaatactaaacaagattaagcaagaagatcattgctcctc
aatgttagcaaatgtctggaagactctagtgctgctgagtttagttgaag
cctcctattgtctcttctgtcctctcagttaaactagctttataatcact
cagttacaaggatcaagtgagtcactcttgtactg
tggatgtgaagagcttggatcacactgttaacactcaaccaagtctgatt
tttataatcctatgtgtcatagttcttaagcatggcagtctattctgcaa
tggaacttagacaaacatattaaagttgccagtcatggtgccatgtgcct
ttaatcctggcacttggaaggcaaaggcataggatggtggaacatgtctg
tgagttcagggtaactgtgttctacttagtagttgcaggcctggaattgc
tacaaagtggtgctttgcctcagtcagagtctccctctccctctctgtct
ccctctccctctccctttccttttctctcctccctcccttctctctcctt
tccttctctccctcctcctcctcctcctcctcctcttcctttgttctctc
tctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50297937_50299080
seq2: B6Ng01-002B03.b_48_1182

seq1  GAATTCAATGACCTAAACAAGACAGACATGGGGCAAGAATAGGGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACCTAAACAAGACAGACATGGGGCAAGAATAGGGAGAGAA  50

seq1  GCCTAATTTATTTCCTTATCTTACATTCTTTTTTGCCTTGAACAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTTATTTCCTTATCTTACATTCTTTTTTGCCTTGAACAAAACCA  100

seq1  AAATATTGGCTTATGTTGAAATGGTTTAGGAAGAAAGATTCAAAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGCTTATGTTGAAATGGTTTAGGAAGAAAGATTCAAAGAGGAA  150

seq1  AATGTTTTTTATGAAAAAGGCAGAATTTTAGGGTACATTTTCTCTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTATGAAAAAGGCAGAATTTTAGGGTACATTTTCTCTTACAT  200

seq1  TTCCTTCTAGCAGATATTTTTGTTCTGTATGAAGAATGGATACTGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTAGCAGATATTTTTGTTCTGTATGAAGAATGGATACTGCACAG  250

seq1  AGCCATAGTTCTTCCAGTGATATAACATGCCAACTTACTTTGCAAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGTTCTTCCAGTGATATAACATGCCAACTTACTTTGCAAATTCT  300

seq1  CCTTCAGTATAGTAAATGATCAAGAATTAGGCTTCAGAAAGAGGGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTATAGTAAATGATCAAGAATTAGGCTTCAGAAAGAGGGATGTG  350

seq1  ATGGATGACAAAATCTCAAGGTAGGTCTTTCTGTGAGTATCTTTCTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGACAAAATCTCAAGGTAGGTCTTTCTGTGAGTATCTTTCTGGGT  400

seq1  ATCAGTCCCAAGTTCAGGGTAGAGATAAGGCAGTTTTGTTGTTGCAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCCAAGTTCAGGGTAGAGATAAGGCAGTTTTGTTGTTGCAGTTA  450

seq1  CATATCACTGACATAAGAGCATACAGGGGAAGCCCCTGTAGAACGTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTGACATAAGAGCATACAGGGGAAGCCCCTGTAGAACGTCCAT  500

seq1  GAGTTCTGTTATTGCTGAAGCTCTGATACCCTCCAATAAGTGCAAAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTTATTGCTGAAGCTCTGATACCCTCCAATAAGTGCAAAGAGC  550

seq1  TAAAATGCTGGCTCTTGGTCTTTCTTGCTCATCAACAAGAGAAAGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTGGCTCTTGGTCTTTCTTGCTCATCAACAAGAGAAAGCAATG  600

seq1  TTGGGTTACTTGTTTGACAACTGGCAGGCTTTCTCAACACCTCTAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTACTTGTTTGACAACTGGCAGGCTTTCTCAACACCTCTAATTCA  650

seq1  GAGAACATCTCTAGTGGTCTACCATTAGAAGAGACTGACCTGGTTATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATCTCTAGTGGTCTACCATTAGAAGAGACTGACCTGGTTATGGT  700

seq1  CTGAGATGCATGTGTAGCCTGTGTCTCACATAAGTCACTCACATTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCATGTGTAGCCTGTGTCTCACATAAGTCACTCACATTTTGAT  750

seq1  GACACTATACATGTGAGCTGTTACAGTCACATAGCCAAAATAGTAAGA-A  799
      |||||||||||||||||||||||||||||||||||||||||||    |  
seq2  GACACTATACATGTGAGCTGTTACAGTCACATAGCCAAAATAGCCCCAGC  800

seq1  TTAATAATTTATATATGTTTCAAGTTTTTAGTTTTTAACATTTACATAAA  849
           |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATTTATATATGTTTCAAGTTTTTAGTTTTTAACATTTACATAAA  850

seq1  TATATATTAATTGCTTCCTATTCCGAAATAGATAAAAAAGAGGGAAAGAA  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTATTGCTTCCTATTCCGAAATAGATAAAAAAGAGGGAAAGAA  900

seq1  CAAAAGAAAATATGG-TGGCTTATTAGACTTCTTAAATAATTTTTCAATT  948
      | ||||||||||||| || ||||||||||||||| |||||||||||| ||
seq2  C-AAAGAAAATATGGTTGTCTTATTAGACTTCTT-AATAATTTTTCACTT  948

seq1  TTACCCGCTCATTAAATACTAAACAAGAATAAAGCAAGAAGATCATTGGC  998
      | ||||||||||| ||||||||||||| || |||||||||||||||| ||
seq2  TGACCCGCTCATT-AATACTAAACAAG-ATTAAGCAAGAAGATCATT-GC  995

seq1  TCTCCAATGTTTAGCAAATGTCTGGAAGAACTCTAGTGCTTGCTGAGTTT  1048
      ||  ||||| |||||||||||||||||| |||||||||| ||||||||||
seq2  TCCTCAATG-TTAGCAAATGTCTGGAAG-ACTCTAGTGC-TGCTGAGTTT  1042

seq1  AGTTGAAGCCTCCCAATGTCTCTTCTG-CCTCTCCAGGTTAAACTAGCTT  1097
      ||||||||||||| | ||||||||||| ||||||   |||||||||||||
seq2  AGTTGAAGCCTCCTATTGTCTCTTCTGTCCTCTC--AGTTAAACTAGCTT  1090

seq1  TATTATCACTCAGTTCACAGGATCAAGTTGAGTCCACTCTTGTACTG  1144
      ||| |||||||||||   ||||||||| ||||| |||||||||||||
seq2  TATAATCACTCAGTTACAAGGATCAAG-TGAGT-CACTCTTGTACTG  1135

seq1: chr11_66321179_66321516
seq2: B6Ng01-002B03.g_360_507 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--AGCGCAAGAG  48
      ||||||||||||||||||||||||||||||||||||||  |  | |||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAAGGAAGAG  50

seq1  AAAAATG-GGA--ACCAGAAGAGAG-GAAGGGAAAGAGAAAGAGAGGGAG  94
       |  | | |||  |  || || ||| ||||| || |||| ||| ||||||
seq2  GAGGAGGAGGAGGAGGAGGAGGGAGAGAAGGAAAGGAGAGAGA-AGGGAG  99

seq1  AGAGCCATTCAGAGCTGCTTCCTGCTCTCTCCAGCTGGCCCTGCTAATTT  144
       |||      ||||                                |   
seq2  GGAG-----GAGAG--------------------------------AAAA  112

seq1  GGCAAATGCCAGGTGATATCTGGGCACGCAGAAACAATTAGCAAATGAGT  194
      || ||  |  ||| || |    || |  |||| |     ||         
seq2  GGAAAGGGAGAGG-GAGA----GGGAGACAGAGAGGGAGAG---------  148

seq1  GATTTGGGTCAAGACCAGTTTATTTATTTGCTTAAAATCTTGAGTAATAT  244
                                                        
seq2  --------------------------------------------------  148

seq1  TGTCAATGGTCTCAAGGAAATGTGGATAGAAAGCTGTTACAGAAGAGAGA  294
                                                        
seq2  --------------------------------------------------  148

seq1  ACTAGGGGAGACTATTAGAGAAAAGGAAACCCAGAGAGGGAGAG  338
                                                  
seq2  --------------------------------------------  148