BAC Information

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BAC

Clone NameB6Ng01-003K09
Chromosome11 (Build37)19 (Build37)
Map Location 29,850,741 - 29,851,31110,410,222 - 10,411,058
singlet/doubletsingletsinglet
Overlap geneC230094A16Rik
Upstream geneLOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, 4931440F15Rik
Downstream geneSpnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003K09.bB6Ng01-003K09.g
ACCDH841291DH841292
length357834
definitionDH841291|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K09, 5' end.DH841292|Mus musculus domesticus DNA, BAC clone: B6Ng01-003K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,850,741 - 29,851,311)(10,410,222 - 10,411,058)
sequence
tctgccatgcaggactatacccctggacctgaataagccctttgtcccta
gagttgctcttttcagagtattttgtcacaacaacaggaaaagaaactga
gacagtggctaagttcagacactaaggctgcccgttgacatgcacatgca
tgcatacatacatttacacacacacacacacacacacacacacacacaca
cacacacacacatacacacacacacaccatctggctgggatggtttgaat
atgcttggcccggggagtgacactattaggaggtgtgaccttgttggagt
aggtgtggctttgttggggtaggtgtgtcattgtgggagtgagcagcctt
gagaaca
gaattcttgcttcagtcaggcagtggtgacctatctgcggtgagtagcca
cttgctcacgtccaaaagttcacgcaatggggtcatgtgcctgagcctgc
tctttcatgatgagtaggctaatgagagggaaaggaaggtcagaagctcc
tacaatgcacagaattttaccagaataattagtagagtggagacagggct
ggggaacccttcactttggtaaccttggtaattttgtctcttcaccaaag
ccagctatagacattgcaggtttgtgtactcagacagaccctgctctcag
cctctggctctgtagccactcttggaattattattaatgctaaatttaca
tttaaaaacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagctcgt
gcttgcacacctgcgtgtacctggcaccatacacaggtagaggtcagagg
acaacctgtaggggtcagttctctctttccactctgtgtgttcatataat
tcgcctcatgttggggctggtgacaattgcctttccttccgctgccaacc
tccctggccccgccattttggagcttttaatctcttacgtgtgagagccc
ccatggttccttttctattgcgctctacaaaaaaatgtaactggcttgtt
cctaataataatgtcatctactgacggaatcggctgaacgcttggcacca
tgttttttttttttttcgcttgtaagtaaagtcatctgcctcactcggct
aacggatgtaaatacttcacctcaaattcatacgcatgagaagcgtagaa
gctctaggtactcaagactactgggctacaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29850741_29851311
seq2: B6Ng01-003K09.b_215_340 (reverse)

seq1  AACAAGGCCACACCTCCAAATAGTGCCACTTCCTAGGCCAAGTATACTCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACTACTACAGGCTCAAATACTTAAAGAAACTCAGAATGGGATTATTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATTTATAAAAAGCCAACTTTAACAAATTTTACTTGGTCAGTATAAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGGAAGAATTTGTATAGGAAGGGATCTAAAAGGAAGGAAGGAGGGAAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGGAAGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAAGGAAGGAGGGAAGGGAGGAAGGAAGGAGGGAAGGAAGGAAGGAAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGATTT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TAGCCTAGGCTTTAGAGAACAGCATCTTAGGGAGTCTGGATTCAGTGTGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTCAAAAACTGAAAAGAATTCCAATTCTTTGTTCACTGAAATCTGAA  450
                         ||   |||      | ||||         | 
seq2  -------------------AA---CAA------GGTCAC---------AC  13

seq1  CTCAATGGTATGAGTGTGTGTGTGTGAGAGAGAGAGTATA-TGAGTATGT  499
      |||     ||  |||||   |    | |  |   || ||| | |     |
seq2  CTC----CTAATAGTGTCACTCCCCGGGCCA---AGCATATTCAAACCAT  56

seq1  GTGTGTGTGAATATGTGTGTGTTTGTATGTGAGTATGTGTATGTGAGTGT  549
          |   ||   ||||||||| |||||||| || ||||| |||| ||||
seq2  CCCAGCCAGATGGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGT  106

seq1  GTGTGTTTGTGAGAATGTGTGT  571
      |||||| |||| |  |||||||
seq2  GTGTGTGTGTGTG--TGTGTGT  126

seq1: chr19_10410222_10411058
seq2: B6Ng01-003K09.g_69_902

seq1  GAATTCTTGCTTCAGTCAGGCAGTGGTGACCTATCTGCGGTGAGTAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTCAGTCAGGCAGTGGTGACCTATCTGCGGTGAGTAGCCA  50

seq1  CTTGCTCACGTCCAAAAGTTCACGCAATGGGGTCATGTGCCTGAGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCACGTCCAAAAGTTCACGCAATGGGGTCATGTGCCTGAGCCTGC  100

seq1  TCTTTCATGATGAGTAGGCTAATGAGAGGGAAAGGAAGGTCAGAAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATGATGAGTAGGCTAATGAGAGGGAAAGGAAGGTCAGAAGCTCC  150

seq1  TACAATGCACAGAATTTTACCAGAATAATTAGTAGAGTGGAGACAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGCACAGAATTTTACCAGAATAATTAGTAGAGTGGAGACAGGGCT  200

seq1  GGGGAACCCTTCACTTTGGTAACCTTGGTAATTTTGTCTCTTCACCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACCCTTCACTTTGGTAACCTTGGTAATTTTGTCTCTTCACCAAAG  250

seq1  CCAGCTATAGACATTGCAGGTTTGTGTACTCAGACAGACCCTGCTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATAGACATTGCAGGTTTGTGTACTCAGACAGACCCTGCTCTCAG  300

seq1  CCTCTGGCTCTGTAGCCACTCTTGGAATTATTATTAATGCTAAATTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCTCTGTAGCCACTCTTGGAATTATTATTAATGCTAAATTTACA  350

seq1  TTTAAAAACATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCTCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAACATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGCTCGT  400

seq1  GCTTGCACACCTGCGTGTACCTGGCACCATACACAGGTAGAGGTCAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACACCTGCGTGTACCTGGCACCATACACAGGTAGAGGTCAGAGG  450

seq1  ACAACCTGTAGGGGTCAGTTCTCTCTTTCCACTCTGTGTGTTCTTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  ACAACCTGTAGGGGTCAGTTCTCTCTTTCCACTCTGTGTGTTCATATAAT  500

seq1  TCACCTCATGTCAGGGTTGGTGACAAGTGCCTTTCCTTCCTCTGGCAACC  550
      || ||||||||  ||| ||||||||| ||||||||||||| ||| |||||
seq2  TCGCCTCATGTTGGGGCTGGTGACAATTGCCTTTCCTTCCGCTGCCAACC  550

seq1  TCCCTGGCCCCGCCATTTTGGAGCTTTTAATCAGTTACGTGTGAGAG-CC  599
      ||||||||||||||||||||||||||||||||  ||||||||||||| ||
seq2  TCCCTGGCCCCGCCATTTTGGAGCTTTTAATCTCTTACGTGTGAGAGCCC  600

seq1  CCATGTTTCCTTTTCCATTGCGCTCTGC-AAATTATGTAGCTGGCCTGTT  648
      ||||| ||||||||| |||||||||| | |||  ||||| ||||| ||||
seq2  CCATGGTTCCTTTTCTATTGCGCTCTACAAAAAAATGTAACTGGCTTGTT  650

seq1  CCTAATAATAATGCCAATTACTGACAGAGCTGGCTGTACACTTGGCACCA  698
      ||||||||||||| ||  ||||||| ||   ||||| || ||||||||||
seq2  CCTAATAATAATGTCATCTACTGACGGAATCGGCTGAACGCTTGGCACCA  700

seq1  GGTCTTTTTTTTTTTTCTCTTGTATGT-AAGTCACCTGCCCCTCACAGCA  747
       || ||||||||||||| |||||| || |||||| ||||| | | | || 
seq2  TGTTTTTTTTTTTTTTCGCTTGTAAGTAAAGTCATCTGCCTCACTCGGCT  750

seq1  GCCAGGTGGAAATTGCTTCTCTTCAAAGCCAACCCACATGAGAAGGCGTG  797
        | | || ||| | |||| | |||||  | |  | |||||||| |||| 
seq2  AACGGATGTAAA-TACTTCACCTCAAATTC-ATACGCATGAGAA-GCGT-  796

seq1  CCAGGCACTAGGTACTCCATGTCTACTGGGGCTCCAAAGG  837
        | || ||||||||| || | ||||| ||||| ||||||
seq2  AGAAGCTCTAGGTACT-CAAGACTACT-GGGCTACAAAGG  834