BAC Information

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BAC

Clone NameB6Ng01-003N24
Chromosome19 (Build37)
Map Location 19,778,883 - 19,780,087
singlet/doubletsinglet
Overlap genenone
Upstream gene2410127L17Rik, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N24.bB6Ng01-003N24.g
ACCDH841452DH841453
length1,200958
definitionDH841452|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N24, 5' end.DH841453|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgagaaaatacagcattgtgggaagacctatagcctacagtctt
tactcagtttttacagcaatgaaaccaagcactactgaaatttgtctact
gagtagcatcttattattcttttgtcacttgtggttgaagcagctgcagt
gatctgttgatgctgtacctgtgtgaaacatttttttttcacagtgattg
aaaattactagggctgtactggagaagctattcatgatccttagacattt
tcctggctaaagtcttttcaccgcacatttcaagactgagcagtgaagag
agcaaaccctatcctcctcaaatatgtcttctgggggaagtgcaggggaa
aatgtccacaaattactccatggtctctttttcaacttcaattccaatgg
agtttgaattgaatcaaaatctttattcttatattatctcagaaagatta
tattactacttctataatatattcatttgttctactcaaattaggaagtt
atgtaatctataatcttgaagaataaaccttagaagttggatataaatgg
gcagagagaatgttggaattttctgcttatatccatccatgatctttttg
cttatgtaaaagaaaatataccttctagttttcctttgctatggctaaga
ttgtcattggacatgatcataggctttggttcttagtaaattagcatacc
tagtctgctgaaaaggtaatttcataaagaaagatgaaagattcaacttc
atctttaaagatatttaatagaaccctctctctttctctcaatttaatca
tgtcttctactttttcctccccagcttaagaatgtgttctaaacttgtac
atgtctttcacaagactcatgagactgaacaaaacatggggcataggtag
taacataaccctgctaatattaatagaaatacaatgtgcaattgactagt
ttccatgacagtagtgtcatcaattttcatagatagcatttgtaaaagaa
gaaaaacataggttttcactgcctcattatcaagcttaaatagaagatat
tgaatttaggatttggctttaatcattgatcattcacaatactgtattct
cagaagctgcagctatggcttttgtcatctggttgttttagtactctgga
agtgtgattcaaatatattcctggcatggctagattgcatggacatgatc


gaattctcgatagtggaagtgtagaatctaatgtgtagcttcacaggctc
agaatgccctgtgaagagataacacgaatcaaaccggcattgagattcca
tattccatcagtctgaatggctacaaccaataattcatgaggcagcacat
actggggagaatgtggagaaagaaacactcctccatggcttgtgggatgg
aaagcttgaacagtcactctggaaatttttctggtggtttcatagaaaac
tggaaatagttctacatgatgacccagctatactgctcctggacctacac
ccaaaagatgctccaacataccacaagactatgctccactatgttcatag
cagctcaaccaaataatggatatagaaaatgcggtatgtctacacaatgg
aatactaatcagccacaataactggcccaactggagaccaacacacgggt
aagcatagatccttgacacttttaatggtgctatgcttggagacaggaac
ctagcataactgggctctgagaggctccacccagtagctgactgaaatag
atgcagataaacacagccaaacactagacaaaggttggggactcttttat
ggaagagttgaggtaaggattaaaggccctgaatgggatgaggaactaca
cagaaagaccaacagaatcaactaacctggacacttggcagctctcagag
actgaggcaccaaccaaagagcatacacgcactggacggtggccccaggc
acatggagctgcattgtctagctgctgtgggaaaagatgtagagacttga
tatgtcagggtgaggggataccctgggagagcaccctctcagaggagggt
ggagagggactatgtgagggagaatttgaggatggcaggtttggaactag
taaaaatatgaatggtgagctttgcatctagagataacagagcttgtttg
ctgatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19778883_19780087
seq2: B6Ng01-003N24.b_48_1247

seq1  GAATTCTGAGAAAATACAGCATTGTGGGAAGACCTATAGCCTACAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAAATACAGCATTGTGGGAAGACCTATAGCCTACAGTCTT  50

seq1  TACTCAGTTTTTACAGCAATGAAACCAAGCACTACTGAAATTTGTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTTTTTACAGCAATGAAACCAAGCACTACTGAAATTTGTCTACT  100

seq1  GAGTAGCATCTTATTATTCTTTTGTCACTTGTGGTTGAAGCAGCTGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCATCTTATTATTCTTTTGTCACTTGTGGTTGAAGCAGCTGCAGT  150

seq1  GATCTGTTGATGCTGTACCTGTGTGAAACATTTTTTTTTCACAGTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTGATGCTGTACCTGTGTGAAACATTTTTTTTTCACAGTGATTG  200

seq1  AAAATTACTAGGGCTGTACTGGAGAAGCTATTCATGATCCTTAGACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTAGGGCTGTACTGGAGAAGCTATTCATGATCCTTAGACATTT  250

seq1  TCCTGGCTAAAGTCTTTTCACCGCACATTTCAAGACTGAGCAGTGAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTAAAGTCTTTTCACCGCACATTTCAAGACTGAGCAGTGAAGAG  300

seq1  AGCAAACCCTATCCTCCTCAAATATGTCTTCTGGGGGAAGTGCAGGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCCTATCCTCCTCAAATATGTCTTCTGGGGGAAGTGCAGGGGAA  350

seq1  AATGTCCACAAATTACTCCATGGTCTCTTTTTCAACTTCAATTCCAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACAAATTACTCCATGGTCTCTTTTTCAACTTCAATTCCAATGG  400

seq1  AGTTTGAATTGAATCAAAATCTTTATTCTTATATTATCTCAGAAAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATTGAATCAAAATCTTTATTCTTATATTATCTCAGAAAGATTA  450

seq1  TATTACTACTTCTATAATATATTCATTTGTTCTACTCAAATTAGGAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTACTTCTATAATATATTCATTTGTTCTACTCAAATTAGGAAGTT  500

seq1  ATGTAATCTATAATCTTGAAGAATAAACCTTAGAAGTTGGATATAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTATAATCTTGAAGAATAAACCTTAGAAGTTGGATATAAATGG  550

seq1  GCAGAGAGAATGTTGGAATTTTCTGCTTATATCCATCCATGATCTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGAATGTTGGAATTTTCTGCTTATATCCATCCATGATCTTTTTG  600

seq1  CTTATGTAAAAGAAAATATACCTTCTAGTTTTCCTTTGCTATGGCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTAAAAGAAAATATACCTTCTAGTTTTCCTTTGCTATGGCTAAGA  650

seq1  TTGTCATTGGACATGATCATAGGCTTTGGTTCTTAGTAAATTAGCATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGGACATGATCATAGGCTTTGGTTCTTAGTAAATTAGCATACC  700

seq1  TAGTCTGCTGAAAAGGTAATTTCATAAAGAAAGATGAAAGATTCAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGCTGAAAAGGTAATTTCATAAAGAAAGATGAAAGATTCAACTTC  750

seq1  ATCTTTAAAGATATTTAATAGAACCCTCTCTCTTTCTCTCAATTTAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAGATATTTAATAGAACCCTCTCTCTTTCTCTCAATTTAATCA  800

seq1  TGTCTTCTACTTTTTCCTCCCCAGCTTAAGAATGTGTTCTAAACTTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTACTTTTTCCTCCCCAGCTTAAGAATGTGTTCTAAACTTGTAC  850

seq1  ATGTC-TTCACAAGACTCATGAGACTGAACAAAACAT-GGGCATAGGTAG  898
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTCTTTCACAAGACTCATGAGACTGAACAAAACATGGGGCATAGGTAG  900

seq1  TAACATAA-CCTGCTAATATTAATAGAAATACAATGTGCAAATTGACTAG  947
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  TAACATAACCCTGCTAATATTAATAGAAATACAATGTGC-AATTGACTAG  949

seq1  TTCCCATGGACAAGTAGTGTCATCAATTTTCATAGATAGCATTTGTAAAA  997
      || |||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAT-GAC-AGTAGTGTCATCAATTTTCATAGATAGCATTTGTAAAA  997

seq1  GAAGAAAAACATAGGTGTCCACTG-CTCATTATCAAGGCTTAAATAG-AG  1045
      |||||||||||||||| | ||||| ||||||||||| |||||||||| ||
seq2  GAAGAAAAACATAGGTTTTCACTGCCTCATTATCAA-GCTTAAATAGAAG  1046

seq1  ATA-TGAA-TTAGGATTTGGGCCTTAAACCATTGATTCATTCACAATACT  1093
      ||| |||| |||||||||||  ||| || |||||| ||||||||||||||
seq2  ATATTGAATTTAGGATTTGG--CTTTAATCATTGA-TCATTCACAATACT  1093

seq1  GTATTCTCAGAAGCTGCAGCTATGCCTTTTTGTCATCTTGTTTGTTTAGT  1143
      |||||||||||||||||||||||| | ||||||||||| |||  ||||||
seq2  GTATTCTCAGAAGCTGCAGCTATGGC-TTTTGTCATCTGGTTGTTTTAGT  1142

seq1  ACTCTGGAA-TGTTGATCCAATATATTCCTTTGCAATGGCTAAGATTGGC  1192
      ||||||||| |||   || ||||||||||  ||  |||||| ||||| ||
seq2  ACTCTGGAAGTGTGATTCAAATATATTCC--TGGCATGGCT-AGATT-GC  1188

seq1  ATTGGACATGATC  1205
      | |||||||||||
seq2  A-TGGACATGATC  1200


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