BAC Information

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BAC

Clone NameB6Ng01-004N11
Chromosome19 (Build37)
Map Location 16,874,781 - 17,044,164
singlet/doubletdoublet
Overlap geneFoxb2, A230083H22Rik
Upstream genePsat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438, Gna14, LOC666665, Vps13a
Downstream geneGcnt1, Rfk, Pcsk5, Eef1a1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004N11.bB6Ng01-004N11.g
ACCDH842143DH842144
length838924
definitionDH842143|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N11, 5' end.DH842144|Mus musculus domesticus DNA, BAC clone: B6Ng01-004N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,043,622 - 17,044,164)(16,874,781 - 16,875,705)
sequence
gaattcactctgtagaccaggctggcctcaaactcagagatctgcctgcc
tctgcctcccaagttctgggattaaaggtgttcgcctccatgcccggctg
catctgactcttacagctgcttgttgggttctttggagggctgtcatgat
agatccctctttgtgagtgttccatagcctcagtaatagtgtcaggcctt
gaagcctccccttgagctggatcccactttgggcctgttgctggaccttc
tcctcaggcaccctctccatttccatccctgtaattccttaacacagaaa
caattatgggtcagagttgtgactgtggaatggcaactccatccctcact
tgacgacctgtcttcctgttggaggtgggctctataaattccctctctct
accttcgggcatttcatcaaaggtccctccctatgagtcctggaagtctc
tcacctcccaggtctctggtgcattctggggggggagtcccccaacctcc
tatttcctgaggttttctgtttacattctttctgctggacctcacttggg
cacttcagcttgttgattcttttgagttctgtggactgtatcttgtgtat
tctgtttaggctctgcattttctaaggaagccagttcccttcttcagttc
ttgactccactgtctccaggaaagcccactgctttctctcctctcttgtt
gccaggtcccgagaagccccaaatccttgtgctttgtatcacaaaactaa
gggacataagctaatttttaacccatacaacaccacaaatgagtgtaggg
ttggtgattagaaactaaggtgtctgcatggcagcact
gaattctggggtagtatcagccctgtacaacaaagttaagtgtctttaaa
ggtcccttaggaggagttagggagagcctattagtgtgtggcctgtgctt
catgacagtgctatgaaaacaaggtgtacaaaacttaggccatgtgacag
ggaccactctttctctggtttagtgagtgcggcctaaacatgtgaccaag
attatgtgacaggggtcacctgtcttgcgtataatcatctggcagttcag
ggcctagttatccagagagcttgtttctcagaaggtcgggcttccctgcc
tgtaaataatgacatctacacattacgtcattcttcatttagctgcgtaa
tattccatgttcacacaacccacattttcttcatatactcagttcctaga
gagataagactcctgagagaaacgcacacagtagagacttggctttatga
agtttcagagggaacaaagactccattagcaactgggctaggggtccttt
ctgtggtgttttggcaaagaagctggctttattctgcctatgccctggga
attttcataagtcacacatataagcaataaactaacttttctcatagact
cagttatttatttctacttcatggatctcaggaattaaactcagattgtc
aggctaggaagcaagagactctacttgctaagtcgtcttgctggctctag
tctacatttttcttgttgcacacaggcctctcagactttaattgtttcag
tgtcattaaaaatgttatatgttcattgagactgaatttagtatttttga
gagaaaatttgaatagctggctcatatgaaatacttctatattttctgtc
aattagaacatgtgcactagtttgttagcttcatggttatcagggttgtg
tgtgtatgtgtgggtatgatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17043622_17044164
seq2: B6Ng01-004N11.b_342_885 (reverse)

seq1  AGTGCTGCCATGCAGACCACCTTTGGTTCTAATCACCAACCCTACACTCA  50
      |||||||||||||||| |||||| | ||||||||||||||||||||||||
seq2  AGTGCTGCCATGCAGA-CACCTTAGTTTCTAATCACCAACCCTACACTCA  49

seq1  TTTGTGGTGTTGTATGGGTT-AAAATTAGCTTATGTCCCTTAGTTTTGTG  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGTGGTGTTGTATGGGTTAAAAATTAGCTTATGTCCCTTAGTTTTGTG  99

seq1  ATACAAAGCACAAGGATTTGGGGCTTCTCGGGACCTGGCAACAAGAGAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGCACAAGGATTTGGGGCTTCTCGGGACCTGGCAACAAGAGAGG  149

seq1  AGAGAAAGCAGTGGGCTTTCCTGGAGACAGTGGAGTCAAGAACTGAAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCAGTGGGCTTTCCTGGAGACAGTGGAGTCAAGAACTGAAGAA  199

seq1  GGGAACTGGCTTCCTTAG-AAATGCAGAGCCTAAACAGAATACACAAGAT  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGAACTGGCTTCCTTAGAAAATGCAGAGCCTAAACAGAATACACAAGAT  249

seq1  ACAGTCCACAGAACTCAAAAGAATCAACAAGCTGAAGTGCCCAAGTGAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCACAGAACTCAAAAGAATCAACAAGCTGAAGTGCCCAAGTGAGG  299

seq1  TCCAGCAGAAAGAATGTAAACAGAAAACCTCAGGAAATAGGAGGTTGGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGAAAGAATGTAAACAGAAAACCTCAGGAAATAGGAGGTTGGGG  349

seq1  GACTCCCCCCCCAGAATGCACCAGAGACCTGGGAGGTGAGAGACTTCCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCCCCCAGAATGCACCAGAGACCTGGGAGGTGAGAGACTTCCAG  399

seq1  GACTCATAGGGAGGGACCTTTGATGAAATGCCCGAAGGTAGAGAGAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATAGGGAGGGACCTTTGATGAAATGCCCGAAGGTAGAGAGAGGGA  449

seq1  ATTTATAGAGCCCACCTCCAACAGGAAGACAGGTCGTCAAGTGAGGGATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGAGCCCACCTCCAACAGGAAGACAGGTCGTCAAGTGAGGGATG  499

seq1  GAGTTGCCATTCCACAGTCACAACTCTGACCCATAATTGTTTCTG  543
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCATTCCACAGTCACAACTCTGACCCATAATTGTTTCTG  544

seq1: chr19_16874781_16875705
seq2: B6Ng01-004N11.g_69_992

seq1  GAATTCTGGGGTAGTATCAGCCCTGTACAACAAAGTTAAGTGTCTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGTAGTATCAGCCCTGTACAACAAAGTTAAGTGTCTTTAAA  50

seq1  GGTCCCTTAGGAGGAGTTAGGGAGAGCCTATTAGTGTGTGGCCTGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTAGGAGGAGTTAGGGAGAGCCTATTAGTGTGTGGCCTGTGCTT  100

seq1  CATGACAGTGCTATGAAAACAAGGTGTACAAAACTTAGGCCATGTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGTGCTATGAAAACAAGGTGTACAAAACTTAGGCCATGTGACAG  150

seq1  GGACCACTCTTTCTCTGGTTTAGTGAGTGCGGCCTAAACATGTGACCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTCTTTCTCTGGTTTAGTGAGTGCGGCCTAAACATGTGACCAAG  200

seq1  ATTATGTGACAGGGGTCACCTGTCTTGCGTATAATCATCTGGCAGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTGACAGGGGTCACCTGTCTTGCGTATAATCATCTGGCAGTTCAG  250

seq1  GGCCTAGTTATCCAGAGAGCTTGTTTCTCAGAAGGTCGGGCTTCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTTATCCAGAGAGCTTGTTTCTCAGAAGGTCGGGCTTCCCTGCC  300

seq1  TGTAAATAATGACATCTACACATTACGTCATTCTTCATTTAGCTGCGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAATGACATCTACACATTACGTCATTCTTCATTTAGCTGCGTAA  350

seq1  TATTCCATGTTCACACAACCCACATTTTCTTCATATACTCAGTTCCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATGTTCACACAACCCACATTTTCTTCATATACTCAGTTCCTAGA  400

seq1  GAGATAAGACTCCTGAGAGAAACGCACACAGTAGAGACTTGGCTTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGACTCCTGAGAGAAACGCACACAGTAGAGACTTGGCTTTATGA  450

seq1  AGTTTCAGAGGGAACAAAGACTCCATTAGCAACTGGGCTAGGGGTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAGGGAACAAAGACTCCATTAGCAACTGGGCTAGGGGTCCTTT  500

seq1  CTGTGGTGTTTTGGCAAAGAAGCTGGCTTTATTCTGCCTATGCCCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGTTTTGGCAAAGAAGCTGGCTTTATTCTGCCTATGCCCTGGGA  550

seq1  ATTTTCATAAGTCACACATATAAGCAATAAACTAACTTTTCTCATAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATAAGTCACACATATAAGCAATAAACTAACTTTTCTCATAGACT  600

seq1  CAGTTATTTATTTCTACTTCATGGATCTCAGGAATTAAACTCAGATTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTTATTTCTACTTCATGGATCTCAGGAATTAAACTCAGATTGTC  650

seq1  AGGCTAGGAAGCAAGAGACTCTACTTGCTAAGTCGTCTTGCTGGCTCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGAAGCAAGAGACTCTACTTGCTAAGTCGTCTTGCTGGCTCTAG  700

seq1  TCTACATTTTTCTTGTTGCACACAGGCCTCTCAGACTTTAATTGTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTTTTCTTGTTGCACACAGGCCTCTCAGACTTTAATTGTTTCAG  750

seq1  TGTCATTAAAAATGTTATATGTTCATTGAGACTGAATTTAGTATTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTAAAAATGTTATATGTTCATTGAGACTGAATTTAGTATTTTTGA  800

seq1  GAGAAAATTTGAATAGCTGGCTCATATGAAATACTTCTATA-TTTCTGTC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAAAATTTGAATAGCTGGCTCATATGAAATACTTCTATATTTTCTGTC  850

seq1  AATTAGAACATGTGCACTAGTTTGTTAGCTTCATGGTTATCAGGGTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTAGAACATGTGCACTAGTTTGTTAGCTTCATGGTTATCAGGG-TTGT  899

seq1  GTGTGTATGTGTGTGTATGTATGTGT  925
      ||||||||||||| ||||| ||||||
seq2  GTGTGTATGTGTGGGTATG-ATGTGT  924