BAC Information

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BAC

Clone NameB6Ng01-006E23
Chromosome19 (Build37)
Map Location 37,829,606 - 37,977,415
singlet/doubletdoublet
Overlap geneLOC668251, LOC209281, Fer1l3
Upstream geneTnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248
Downstream geneCep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006E23.bB6Ng01-006E23.g
ACCDH843207DH843208
length1,0691,018
definitionDH843207|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E23, 5' end.DH843208|Mus musculus domesticus DNA, BAC clone: B6Ng01-006E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,829,606 - 37,830,687)(37,976,387 - 37,977,415)
sequence
gaattccttagtaaagcattggagttgtatgccaactttggaaattctca
gcattctcttgtctggaaaatgcctctggaacagcaccctgaagcctctg
gacactcctcactcgctgtctcttgcttctatatgctctctttcatattc
tgttaaaaaaattattttcgtgttgtcttctatgtaattttttttcaaat
atttttagtttctttagctgtgatatgctctcctctccctgtggtttaat
cacttcaccgactgttttaatgttaattgtttattttaatcttaaattaa
ttatttgaaacactactttttaaaactctcattcagagctgagaagatgg
cttactcctcctgcagaggactcggagctggttcccagcacaaacatggg
aagtgcataatcaaccatcatgccaggtccagaaactctgatgccctctt
ctggcctctttggacactgcatgtccatggtccacatacatagttgtgta
caggcaagacactcatatacgtttaactttcttatcttgtgttttggact
cactagtgctaacacctgaaatctatcaggctctgtgatttctgccaatt
cttagtgatttccttttactttatgtcttttttttttttaattgcaaact
tatctgctgaaagtctttaactgaaataaaatcctctttgcatttttttt
ttttttttttggagggggacaatatatgtattctaatgcctaacccaaat
ctcagggaagttaacattgtttctgtttattttactgctctaactttctt
tgctgtctgtggcctgggctttcttgtagttcattcacctttgtcttagg
ttctgcttgtgtcctggcttcctatagggtggtgggtctctccatcctac
agacagtgtgtgcagccacagtgtatggctgtcttggtgtgacgggtcat
ggctggtctattgtagcctcacctcagcatagcagagggtccagctataa
ctttacaatcttggttactagagacctctcaggaatagcctaaatggacg
agaaattccgaaatgagca
gaattctgccgacaggcctatggggtaggctaaacccttgttttgtggat
tcaaatcccttgcagggtcaggcatccagtttcacctagagtagaagcag
aggcgctgcctgggcccctctatataaatgaaccccagtgccaggatttc
ccaagttactagggacttagagaccttttctaggtcctaagatgtcagct
aaaacttagtgaaggctgggtataaaagtggaaatggtgcttggtgtatt
gacacacacctttaatccctgccctttggagacaaaggcaggcagatctc
tgtgaattcgaggccagcctggtctacatggtgaattccaggccagaact
acataataagaccttgtcttaaaaaaaaaaaagtttagagtgttagacct
ttcttgaccttagtgtcttcttctgcagagacaacagcaactttctgaag
tggcatgaccattcattacacaggttatccacacagagcacctccctgtg
agggtgtaccttgcaggggcctgtcagcagaggagcagcctccatttgct
cactgatgcagctaaggcaccttgagttcctactaagcacaagctcggct
gcacactgtagggctgtgggataagcaagaagaaacatggttccatctct
cggagcctacagaaatgtccgatgttgttcttagcagtcaagttacaaag
gaagtgagaaggaaggcagggagattgatgtgggagctcgaggccacggg
gatgctgaagaaggagagccgaaggaggggaagcaatttgtcctcccagc
tttccacatggagtcggtttaggaacacatgggaggggaaatgtgaagaa
acctcggaggaaaattggaggcaatctaagattgttttacagataaaaat
cgtgcttggggaatattccttggtcgaagtaaaatatttgtgaacgtgat
gtcatgtgttaaacctgtctgctttatgaggggaaagtggagatgacatc
tggaggtgctcatcgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37829606_37830687
seq2: B6Ng01-006E23.b_46_1114

seq1  GAATTCCTTAGTAAAGCATTGGAGTTGTATGCCAACTTTGGAAATTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTAAAGCATTGGAGTTGTATGCCAACTTTGGAAATTCTCA  50

seq1  GCATTCTCTTGTCTGGAAAATGCCTCTGGAACAGCACCCTGAAGCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTCTTGTCTGGAAAATGCCTCTGGAACAGCACCCTGAAGCCTCTG  100

seq1  GACACTCCTCACTCGCTGTCTCTTGCTTCTATATGCTCTCTTTCATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCTCACTCGCTGTCTCTTGCTTCTATATGCTCTCTTTCATATTC  150

seq1  TGTTAAAAAAATTATTTTCGTGTTGTCTTCTATGTAATTTTTTTTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAAAATTATTTTCGTGTTGTCTTCTATGTAATTTTTTTTCAAAT  200

seq1  ATTTTTAGTTTCTTTAGCTGTGATATGCTCTCCTCTCCCTGTGGTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTTTCTTTAGCTGTGATATGCTCTCCTCTCCCTGTGGTTTAAT  250

seq1  CACTTCACCGACTGTTTTAATGTTAATTGTTTATTTTAATCTTAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACCGACTGTTTTAATGTTAATTGTTTATTTTAATCTTAAATTAA  300

seq1  TTATTTGAAACACTACTTTTTAAAACTCTCATTCAGAGCTGAGAAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAAACACTACTTTTTAAAACTCTCATTCAGAGCTGAGAAGATGG  350

seq1  CTTACTCCTCCTGCAGAGGACTCGGAGCTGGTTCCCAGCACAAACATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCCTCCTGCAGAGGACTCGGAGCTGGTTCCCAGCACAAACATGGG  400

seq1  AAGTGCATAATCAACCATCATGCCAGGTCCAGAAACTCTGATGCCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATAATCAACCATCATGCCAGGTCCAGAAACTCTGATGCCCTCTT  450

seq1  CTGGCCTCTTTGGACACTGCATGTCCATGGTCCACATACATAGTTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTTGGACACTGCATGTCCATGGTCCACATACATAGTTGTGTA  500

seq1  CAGGCAAGACACTCATATACGTTTAACTTTCTTATCTTGTGTTTTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGACACTCATATACGTTTAACTTTCTTATCTTGTGTTTTGGACT  550

seq1  CACTAGTGCTAACACCTGAAATCTATCAGGCTCTGTGATTTCTGCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGCTAACACCTGAAATCTATCAGGCTCTGTGATTTCTGCCAATT  600

seq1  CTTAGTGATTTCCTTTTACTTTATGTCTTTTTTTTTTTTAATTGCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGATTTCCTTTTACTTTATGTCTTTTTTTTTTTTAATTGCAAACT  650

seq1  TATCTGCTGAAAGTCTTTAACTGAAATAAAATCCTCTTTGCATTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGAAAGTCTTTAACTGAAATAAAATCCTCTTTGCATTTTTTTT  700

seq1  TTTTTTTTTTGGAGGGGGACAATATATGTATTCTAATGCCTAACCCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGGAGGGGGACAATATATGTATTCTAATGCCTAACCCAAAT  750

seq1  CTCAGGGAAGTTAACATTGTTTCTGTTTATTTTACTGCTCTAACTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAAGTTAACATTGTTTCTGTTTATTTTACTGCTCTAACTTTCTT  800

seq1  TGCTGTCTGTGGCCTGGGCTTTCTTGTAGTTCATTCACCTTTGTCTTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTGTGGCCTGGGCTTTCTTGTAGTTCATTCACCTTTGTCTTAGG  850

seq1  TTCTGCTTGTGTCCTGGCTTCCTATAGGGTGGTGGGTCTCTCCATCCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTGTGTCCTGGCTTCCTATAGGGTGGTGGGTCTCTCCATCCTAC  900

seq1  AGACAGTGTGTGCAGCCACAGTGTATGGCTGTCTGGGTGTGACGGTGTCC  950
      |||||||||||||||||||||||||||||||||| |||||||||| ||| 
seq2  AGACAGTGTGTGCAGCCACAGTGTATGGCTGTCTTGGTGTGACGG-GTC-  948

seq1  ATTGGCTTGGTCTATTGTAGCCTCAGCCTCAGCAATAGCAGAGGTCCCAG  1000
        |||| |||||||||||||||||| ||||||| ||||||||||  ||||
seq2  -ATGGC-TGGTCTATTGTAGCCTCA-CCTCAGC-ATAGCAGAGGGTCCAG  994

seq1  CTATAACTTTACATTCTTGGTTACCTAGAGACCTTCTCAGTAATGGCTTA  1050
      ||||||||||||| ||||||||| ||||||||| |||||| ||| || ||
seq2  CTATAACTTTACAATCTTGGTTA-CTAGAGACC-TCTCAGGAATAGCCTA  1042

seq1  AAATAGGAAGCAGCAAATTCCAGAAATGAGCA  1082
      ||   ||| | || ||||||| ||||||||||
seq2  AA--TGGACG-AG-AAATTCC-GAAATGAGCA  1069

seq1: chr19_37976387_37977415
seq2: B6Ng01-006E23.g_66_1083 (reverse)

seq1  TCTCGTTGAGCACCTCCAG-TGTCATCTCCACTTTCCCCTTCAGTAAAGC  49
      ||||| ||||||||||||| ||||||||||||||||||| ||| ||||||
seq2  TCTCGATGAGCACCTCCAGATGTCATCTCCACTTTCCCC-TCA-TAAAGC  48

seq1  AGAACAGGTTTAAACACATGACATCACGTTTCACAAATATTTTTACTTCG  99
      || |||||||| |||||||||||||||| |||||||||| ||||||||||
seq2  AG-ACAGGTTT-AACACATGACATCACG-TTCACAAATA-TTTTACTTCG  94

seq1  ACCCAAGGAATATTCCCCAAGCCACGATTTTTATTCTTGTAAAACAATCC  149
      | ||||||||||||||||||| ||||||||||||   ||||||||||| |
seq2  A-CCAAGGAATATTCCCCAAG-CACGATTTTTAT--CTGTAAAACAAT-C  139

seq1  TTAGATTGCCTCCAATTTTCCTCCCGAGGTTTCTTCACATTTCCCCTCCC  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAGATTGCCTCCAATTTTCCT-CCGAGGTTTCTTCACATTTCCCCTCCC  188

seq1  ATGTGTTCCTAAACCGACTCCATGTGGAAAGCTGGGAGGACAAATTGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCCTAAACCGACTCCATGTGGAAAGCTGGGAGGACAAATTGCTT  238

seq1  CCCCTCCTTCGGCTCTCCTTCTTCAGCATCCCCGTGGCCTCGAGCTCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCGGCTCTCCTTCTTCAGCATCCCCGTGGCCTCGAGCTCCCA  288

seq1  CATCAATCTCCCTGCCTTCCTTCTCACTTCCTTTGTAACTTGACTGCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATCTCCCTGCCTTCCTTCTCACTTCCTTTGTAACTTGACTGCTAA  338

seq1  GAACAACATCGGACATTTCTGTAGGCTCCGAGAGATGGAACCATGTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATCGGACATTTCTGTAGGCTCCGAGAGATGGAACCATGTTTCT  388

seq1  TCTTGCTTATCCCACAGCCCTACAGTGTGCAGCCGAGCTTGTGCTTAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTATCCCACAGCCCTACAGTGTGCAGCCGAGCTTGTGCTTAGTA  438

seq1  GGAACTCAAGGTGCCTTAGCTGCATCAGTGAGCAAATGGAGGCTGCTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCAAGGTGCCTTAGCTGCATCAGTGAGCAAATGGAGGCTGCTCCT  488

seq1  CTGCTGACAGGCCCCTGCAAGGTACACCCTCACAGGGAGGTGCTCTGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACAGGCCCCTGCAAGGTACACCCTCACAGGGAGGTGCTCTGTGT  538

seq1  GGATAACCTGTGTAATGAATGGTCATGCCACTTCAGAAAGTTGCTGTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACCTGTGTAATGAATGGTCATGCCACTTCAGAAAGTTGCTGTTGT  588

seq1  CTCTGCAGAAGAAGACACTAAGGTCAAGAAAGGTCTAACACTCTAAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGAAGAAGACACTAAGGTCAAGAAAGGTCTAACACTCTAAACTT  638

seq1  TTTTTTTTTTAAGACAAGGTCTTATTATGTAGTTCTGGCCTGGAATTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAGACAAGGTCTTATTATGTAGTTCTGGCCTGGAATTCAC  688

seq1  CATGTAGACCAGGCTGGCCTCGAATTCACAGAGATCTGCCTGCCTTTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACCAGGCTGGCCTCGAATTCACAGAGATCTGCCTGCCTTTGTC  738

seq1  TCCAAAGGGCAGGGATTAAAGGTGTGTGTCAATACACCAAGCACCATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGGCAGGGATTAAAGGTGTGTGTCAATACACCAAGCACCATTTC  788

seq1  CACTTTTATACCCAGCCTTCACTAAGTTTTAGCTGACATCTTAGGACCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTATACCCAGCCTTCACTAAGTTTTAGCTGACATCTTAGGACCTA  838

seq1  GAAAAGGTCTCTAAGTCCCTAGTAACTTGGGAAATCCTGGCACTGGGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTCTCTAAGTCCCTAGTAACTTGGGAAATCCTGGCACTGGGGTT  888

seq1  CATTTATATAGAGGGGCCCAGGCAGCGCCTCTGCTTCTACTCTAGGTGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATAGAGGGGCCCAGGCAGCGCCTCTGCTTCTACTCTAGGTGAA  938

seq1  ACTGGATGCCTGACCCTGCAAGGGATTTGAATCCACAAAACAAGGGTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGCCTGACCCTGCAAGGGATTTGAATCCACAAAACAAGGGTTTA  988

seq1  GCCTACCCCATAGGCCTGTCGGCAGAATTC  1029
      ||||||||||||||||||||||||||||||
seq2  GCCTACCCCATAGGCCTGTCGGCAGAATTC  1018