BAC Information

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BAC

Clone NameB6Ng01-006P24
Chromosome19 (Build37)
Map Location 25,102,940 - 25,246,049
singlet/doubletdoublet
Overlap geneDock8, LOC100042503
Upstream geneGm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1
Downstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P24.bB6Ng01-006P24.g
ACCDH843701DH843702
length42579
definitionDH843701|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P24, 5' end.DH843702|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,102,940 - 25,103,370)(25,245,971 - 25,246,049)
sequence
ctgtgtgaaaaacaaatgcagtttttatcactattgctcggtagtacagt
ttgaggtcaaggatggagattcccccaaaagttcttttattgttgagaat
agtttttgttctcctggggttttttgtcattcaagatgaatttggaagtt
gctctttctaactctatgaagaattgagttggaattttgatggggattgc
attgaatctgtagattgcttttggcaagatggtcatttttactatattaa
tcctaccaatccaattccatcttctgagaccttcttcaatttctttcttc
agagacttgacattcttgttatacagactttcacttgcttagtcacacaa
aggtattttatattatttgtgactattgtgaagggtattgtttcgctaat
ttctttcccaacctgtttatccttt
accaggacccggaggacacctcccagcaggctgtctttacagtccagggc
ggagcttgcctggggggtgggtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25102940_25103370
seq2: B6Ng01-006P24.b_47_477

seq1  GAATTCCTGTGTGAAAAACAAATGCAGTTTTTATCACTATTGCTCGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTGAAAAACAAATGCAGTTTTTATCACTATTGCTCGGTAG  50

seq1  TACAGTTTGAGGTCAAGGATGGAGATTCCCCCAAAAGTTCTTTTATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTGAGGTCAAGGATGGAGATTCCCCCAAAAGTTCTTTTATTGTT  100

seq1  GAGAATAGTTTTTGTTCTCCTGGGGTTTTTTGTCATTCAAGATGAATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGTTTTTGTTCTCCTGGGGTTTTTTGTCATTCAAGATGAATTTG  150

seq1  GAAGTTGCTCTTTCTAACTCTATGAAGAATTGAGTTGGAATTTTGATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCTCTTTCTAACTCTATGAAGAATTGAGTTGGAATTTTGATGGG  200

seq1  GATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATGGTCATTTTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATGGTCATTTTTACTA  250

seq1  TATTAATCCTACCAATCCAATTCCATCTTCTGAGACCTTCTTCAATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCCTACCAATCCAATTCCATCTTCTGAGACCTTCTTCAATTTCT  300

seq1  TTCTTCAGAGACTTGACATTCTTGTTATACAGACTTTCACTTGCTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAGACTTGACATTCTTGTTATACAGACTTTCACTTGCTTAGTC  350

seq1  ACACAAAGGTATTTTATATTATTTGTGACTATTGTGAAGGGTATTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGTATTTTATATTATTTGTGACTATTGTGAAGGGTATTGTTTC  400

seq1  GCTAATTTCTTTCCCAGCCTGTTTATCCTTT  431
      |||||||||||||||| ||||||||||||||
seq2  GCTAATTTCTTTCCCAACCTGTTTATCCTTT  431

seq1: chr19_25245971_25246049
seq2: B6Ng01-006P24.g_72_150 (reverse)

seq1  CCACCCCACCCACCCCCCAGGCAAGCTCCGCCCTGGACTGTAAAGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACCCACCCCCCAGGCAAGCTCCGCCCTGGACTGTAAAGACAGC  50

seq1  CTGCTGGGAGGTGTCCTCCGGGTCCTGGT  79
      |||||||||||||||||||||||||||||
seq2  CTGCTGGGAGGTGTCCTCCGGGTCCTGGT  79