BAC Information

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BAC

Clone NameB6Ng01-007G01
Chromosome19 (Build37)
Map Location 23,974,858 - 24,137,346
singlet/doubletdoublet
Overlap geneApba1, Gm967
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007G01.bB6Ng01-007G01.g
ACCDH843967DH843968
length570993
definitionDH843967|Mus musculus domesticus DNA, BAC clone: B6Ng01-007G01, 5' end.DH843968|Mus musculus domesticus DNA, BAC clone: B6Ng01-007G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,136,771 - 24,137,346)(23,974,858 - 23,975,849)
sequence
aatatggacttttggtaacatttttgctttatgtctttatgtttcttgtg
tttctatgttggttgtttatctgttgagatggacagccatccagtttcag
atggggcttcttcgtgaacagccttccttgaaagtgggggagtgcttgcc
tagcacacaggagactctggggtcagccacagcaccataaattaaaagca
aagcaaaactaaacaaaacactagaagaaaaacaaattaaaaaagagagc
cctggggactggagagatggcttagcaggtaagagcactgactgagttca
aatcccagcaaccacatggtggctcacaaccatccgtaatgagatctgat
gtcctctttggtgtgtctgaagataactacagtgtacttacatataataa
ataaatacatctttaaaaaaaaacaaaaaacaaaagagaggcctggagag
aggctcactcagtaaggtgctttctgcacaatcatgaagacctacatgtg
aaacttagtaactgcttacaagtccccaaagcaggttatgtggtctgtgc
ttatgacccggggggggggg
gaattcagcatacggcccacaaggattctgatttttcttttaacggttgc
taggagactgtccaccaaggtcagatgcacatgttaattaattaagactc
attagcagcatcttgccctgttgacctggctgctgtgttgtcaagcctcc
aaggacaagtaaaaagaatcggaccactgccaagaattctatttctgtgc
gggattcccgtgaggtgctctgaaatgaggggttccctctgtggatctcc
gcctgctcatgaggttctggcctgccacaatatttccaggattggatagc
aagggatggagttgaaatgggatccaaagtcaggcagacagagtttagga
tgaagatgtgttctgtcagtgcctgagttggggtcagttccttgctgggg
atgtgaggtggtactcttgggaagagaaaggacggccttatggtatctcc
aatactgcatacattcatacctgaagaggactggtccccaagtaagcacc
catggctcaggttggtctactgacttgctatgaaagagtacatatcccag
ggcactctttgctatctcccggggtccaaactgttcaaacttagataaat
aggtacagatggatccagtcgttccaacatccctaaggcttggacagatg
tgtaaccatggagacaaaggatcacctagagacagcagagatggccttcc
aggatattcattccatcgaacagacctcaggaaaggaggaaacctgctgc
ttagacagtcactttggatttattgagtatttggacatataggacattgc
ctgaataagaaatacgacatagctacaggaagtcatttttaatggctttt
ctgctttaaatccttttaatttggaaatattcttggaaattgaacctggt
tccttgggagagaaaagtggatctttagtcactaagcaatctccagtggg
gcaagaagtctcggtgtgcgctcttgcctcaatgtatgactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24136771_24137346
seq2: B6Ng01-007G01.b_47_622 (reverse)

seq1  CCCCCCCCCCCGGGTCATAAGCACAGACCACATAACCTGCTTTGGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCGGGTCATAAGCACAGACCACATAACCTGCTTTGGGGACT  50

seq1  TGTAAGCAGTTACTAAGTTTCACATGTAGGTCTTCATGATTGTGCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGTTACTAAGTTTCACATGTAGGTCTTCATGATTGTGCAGAAA  100

seq1  GCACCTTACTGAGTGAGCCTCTCTCCAGGCCTCTCTTTTGTTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTACTGAGTGAGCCTCTCTCCAGGCCTCTCTTTTGTTTTTTGTTT  150

seq1  TTTTTTAAAGATGTATTTATTTATTATATGTAAGTACACTGTAGTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGATGTATTTATTTATTATATGTAAGTACACTGTAGTTATCT  200

seq1  TCAGACACACCAAAGAGGACATCAGATCTCATTACGGATGGTTGTGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACCAAAGAGGACATCAGATCTCATTACGGATGGTTGTGAGCC  250

seq1  ACCATGTGGTTGCTGGGATTTGAACTCAGTCAGTGCTCTTACCTGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGATTTGAACTCAGTCAGTGCTCTTACCTGCTAAG  300

seq1  CCATCTCTCCAGTCCCCAGGGCTCTCTTTTTTAATTTGTTTTTCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCAGTCCCCAGGGCTCTCTTTTTTAATTTGTTTTTCTTCTAG  350

seq1  TGTTTTGTTTAGTTTTGCTTTGCTTTTAATTTATGGTGCTGTGGCTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTAGTTTTGCTTTGCTTTTAATTTATGGTGCTGTGGCTGACC  400

seq1  CCAGAGTCTCCTGTGTGCTAGGCAAGCACTCCCCCACTTTCAAGGAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCTCCTGTGTGCTAGGCAAGCACTCCCCCACTTTCAAGGAAGGC  450

seq1  TGTTCACGAAGAAGCCCCATCTGAAACTGGATGGCTGTCCATCTCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACGAAGAAGCCCCATCTGAAACTGGATGGCTGTCCATCTCAACAG  500

seq1  ATAAACAACCAACATAGAAACACAAGAAACATAAAGACATAAAGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAACCAACATAGAAACACAAGAAACATAAAGACATAAAGCAAAAA  550

seq1  TGTTACCAAAAGTCCATATTGAATTC  576
      ||||||||||||||||||||||||||
seq2  TGTTACCAAAAGTCCATATTGAATTC  576

seq1: chr19_23974858_23975849
seq2: B6Ng01-007G01.g_69_1061

seq1  GAATTCAGCATACGGCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATACGGCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGC  50

seq1  TAGGAGACTGTCCACCAAGGTCAGATGCACATGTTAATTAATTAAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACTGTCCACCAAGGTCAGATGCACATGTTAATTAATTAAGACTC  100

seq1  ATTAGCAGCATCTTGCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGCATCTTGCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCC  150

seq1  AAGGACAAGTAAAAAGAATCGGACCACTGCCAAGAATTCTATTTCTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAAGTAAAAAGAATCGGACCACTGCCAAGAATTCTATTTCTGTGC  200

seq1  GGGATTCCCGTGAGGTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCCCGTGAGGTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCC  250

seq1  GCCTGCTCATGAGGTTCTGGCCTGCCACAATATTTCCAGGATTGGATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCATGAGGTTCTGGCCTGCCACAATATTTCCAGGATTGGATAGC  300

seq1  AAGGGATGGAGTTGAAATGGGATCCAAAGTCAGGCAGACAGAGTTTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGAGTTGAAATGGGATCCAAAGTCAGGCAGACAGAGTTTAGGA  350

seq1  TGAAGATGTGTTCTGTCAGTGCCTGAGTTGGGGTCAGTTCCTTGCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTGTTCTGTCAGTGCCTGAGTTGGGGTCAGTTCCTTGCTGGGG  400

seq1  ATGTGAGGTGGTACTCTTGGGAAGAGAAAGGACGGCCTTATGGTATCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTGGTACTCTTGGGAAGAGAAAGGACGGCCTTATGGTATCTCC  450

seq1  AATACTGCATACATTCATACCTGAAGAGGACTGGTCCCCAAGTAAGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCATACATTCATACCTGAAGAGGACTGGTCCCCAAGTAAGCACC  500

seq1  CATGGCTCAGGTTGGTCTACTGACTTGCTATGAAAGAGTACATATCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTCAGGTTGGTCTACTGACTTGCTATGAAAGAGTACATATCCCAG  550

seq1  GGCACTCTTTGCTATCTCCCGGGGTCCAAACTGTTCAAACTTAGATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCTTTGCTATCTCCCGGGGTCCAAACTGTTCAAACTTAGATAAAT  600

seq1  AGGTACAGATGGATCCAGTCGTTCCAACATCCCTAAGGCTTGGACAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGATGGATCCAGTCGTTCCAACATCCCTAAGGCTTGGACAGATG  650

seq1  TGTAACCATGGAGACAAAGGATCACCTAGAGACAGCAGAGATGGCC-TCC  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTAACCATGGAGACAAAGGATCACCTAGAGACAGCAGAGATGGCCTTCC  700

seq1  AGGATATTCATTCCATCGAACAGACCTCAGGAAAGGAAGGAAACCTGCTG  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGATATTCATTCCATCGAACAGACCTCAGGAAAGG-AGGAAACCTGCTG  749

seq1  CTTAGACAGTCACTTTGGATTTAATTGAGTATTTGGACATATAGGACATT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTAGACAGTCACTTTGGATTT-ATTGAGTATTTGGACATATAGGACATT  798

seq1  GCCTGAATAAGAAATACGACATAGCTACAGGAAGTCATTTTT-ATTGCTT  848
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  GCCTGAATAAGAAATACGACATAGCTACAGGAAGTCATTTTTAATGGCTT  848

seq1  TTCTGCTTTAAAT-CTTTTTATTTGTAAATATTCTTTGGAATTGAACCTG  897
      ||||||||||||| ||||| ||||| |||||||||| | |||||||||||
seq2  TTCTGCTTTAAATCCTTTTAATTTGGAAATATTCTTGGAAATTGAACCTG  898

seq1  GGTCCTTTGGAAGAGAAAAGGTGATC-TTAGTCACTAAGCAATCTCCAGT  946
      | ||| |||| |||||||||  |||| |||||||||||||||||||||||
seq2  GTTCC-TTGGGAGAGAAAAGTGGATCTTTAGTCACTAAGCAATCTCCAGT  947

seq1  GGGGCAAG-AGTCTCGGTGTGCGCCCTTGCCTCACAGGGATGACTGG  992
      |||||||| ||||||||||||||| ||||||||| | | ||||||||
seq2  GGGGCAAGAAGTCTCGGTGTGCGCTCTTGCCTCA-ATGTATGACTGG  993