BAC Information

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BAC

Clone NameB6Ng01-007K09
Chromosome19 (Build37)17 (Build37)
Map Location 12,786,333 - 12,786,51147,625,846 - 47,626,066
singlet/doubletsingletsinglet
Overlap geneKeg1
Upstream geneGm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443
Downstream geneZfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007K09.bB6Ng01-007K09.g
ACCDH844151DH844152
length492221
definitionDH844151|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K09, 5' end.DH844152|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,786,333 - 12,786,511)(47,625,846 - 47,626,066)
sequence
gaattctctgtgactaggctggtctcaaactcagagatccatctgccact
gcctccagagtgctgaaacggaaggcgtgcaccagacacctggctctgac
atttaacttggcctcccgtctttacttgctgagccttcttgccagctact
ctacaggctttctccaaggagggagagctacagctacatctggttacaca
ggagctggaagaagacaaaacacagaaagtaaaattcccctaaacacact
acaagagcgaatagatgaccacaatttgaaatacttattgtacacttaaa
accctccctcttccggctggagagatagatggctcagcagttaagagcac
cgactgctcttccagaggtcctgagttcaattcacagcaaccacatagtg
gctcacaaccatctgtaatgggatcggatgccctcttctagagtgtctga
agatagctatacatacataaaataaataaatcttaaaaaaaa
tgggatagcctggactacagagagagcctatctctgaaacaggaggggtg
gggagagaaaatgagcaagactgcagtagcagaagcagcagcagccgtca
ggatggaggaggcattccaacccaaggacaacttatccacgttgtgtcaa
tttccatgtgtccctgtcatccttccttagaggcacgaagattcatgatt
agggggaagtgtggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12786333_12786511
seq2: B6Ng01-007K09.b_361_538 (reverse)

seq1  TTTTTTTTAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCA  50
      |||||||||||||||||||||| |||||| |||     ||||| ||||||
seq2  TTTTTTTTAAGATTTATTTATTTTATGTATGTA-----TAGCTATCTTCA  45

seq1  GACACACCAGAAGAGGACATCAGATCTCATTACAGATGTTTGTGAGCCAC  100
      ||||| | |||||||| |||| |||| ||||||||||| |||||||||||
seq2  GACACTCTAGAAGAGGGCATCCGATCCCATTACAGATGGTTGTGAGCCAC  95

seq1  CATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCGGTG  150
       |||||||||||| || |||||||||||||||||||||||||||||||||
seq2  TATGTGGTTGCTGTGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTG  145

seq1  CTCTCAACCGCTGAGCC----ATCTCTCCAGCC  179
      |||| ||| ||||||||    ||||||||||||
seq2  CTCTTAACTGCTGAGCCATCTATCTCTCCAGCC  178

seq1: chr17_47625846_47626066
seq2: B6Ng01-007K09.g_70_290

seq1  TGGGATAGCCTGGACTACAGAGAGAGCCTATCTCTGAAACAGGAGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCCTGGACTACAGAGAGAGCCTATCTCTGAAACAGGAGGGGTG  50

seq1  GGGAGAGAAAATGAGCAAGACTGCAGTAGCAGAAGCAGCAGCAGCCGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAAAATGAGCAAGACTGCAGTAGCAGAAGCAGCAGCAGCCGTCA  100

seq1  GGATGGAGGAGGCATTCCAACCCAAGGACAACTTATCCACGTTGTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGGAGGCATTCCAACCCAAGGACAACTTATCCACGTTGTGTCAA  150

seq1  TTTCCATGTGTCCCTGTCATCCTTCCTTAGAGGCACGAAGATTCATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTGTCCCTGTCATCCTTCCTTAGAGGCACGAAGATTCATGATT  200

seq1  AGGGGGAAGTGTGGGGTGGGG  221
      |||||||||||||||||||||
seq2  AGGGGGAAGTGTGGGGTGGGG  221