BAC Information

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BAC

Clone NameB6Ng01-008N11
Chromosome19 (Build37)
Map Location 22,254,743 - 22,386,544
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N11.bB6Ng01-008N11.g
ACCDH844963DH844964
length1,1421,089
definitionDH844963|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N11, 5' end.DH844964|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,254,743 - 22,255,898)(22,385,453 - 22,386,544)
sequence
gaattcattgtcgtgttgctatgtctgtcacatgttggtctccatggaac
ttggtgatctgaatgtgctgtggtgtactgttgccaactgtttaacatcc
aaagccatttggaatttgtttactccaagccattgtaccagaaccatgtt
agtaacagaattgctgtgtggagttggaaatgaaataatataaagagctt
ccaggtatgcgcatgaacagaaatgtgcagcccggactttcagcatctgc
aggtaagtctctccttgtgtggacctggtcagcttggtggaccattgagg
gaggattcagatttatattagaggttcaccactcttcctccaagtctctt
catccttctctttgatactcaacccacaggtgaagttttaccaaaccctg
ctgtagactctgagataggcgtgcagagttttctggagtcctcttcttat
tttatttctcactcaggtcagatactgctctgtgacttgagaataaagat
tgttcttgttttctcagcatgcaatgaatttcacctctgtatgctgatcc
aattctgtggatatgtgataagaagtgatcccatccctatttcacatctg
tatatcatccctttggctgtctaagtgttgcagaaatcccaactgattta
aaagtccattcacctttctcgctcccctacttctcccttactacaggctc
ctggactcagtcctgcccagctgcatcgcactgatcagttagaaccagac
atacagtttttcctagaaaataaacattaggttatttatttcccctcttg
aaagttgcattgttccaggttaattgtcctatcagataatcttctctagt
agtgtttagtcccattaaacatgcattctgaaatgtgcaatatttcccca
tttcctagagatgaaatgttttgcagagtaactttcagctaacattttta
ttttactttgtgtgtgtgtctgcacatatatccaggaatatattgcttgt
atatcagaggatctcagagttagtctacatgactcctggtattggctcac
cagcaatacctcttcggctgaatctatcctcctagagttcactaacataa
ttaaatctcttctttattcgttagtgtgcatgtttatgacat
gaattcaatccatcataacttcagagtactgagacagtcctgcgagagca
gtgtgaagagcaggaggaccaggattgacaagatcgaaagtgtaggaagg
tctgcttcaggcagtgacatgtacagttatctgtactcttagtgccaggg
agcagacatcatcgaagatttttgtggcaaagttttcccaatctaattgg
aaaccaccaaaatgactaatgcagggacatctacctgtgacagtccttac
aaagcccatcctcacaccagggtgtacttcttacacattagctagtgaca
agcctcaccaacctccaaggtgagggctcctttctttccccatatcccta
tagttgggcctatctcaatgtcctgcctctgatgcatacaacgacgtgaa
atgtcctggataggataaagtgagaaaatttttagggaagaaaatgctct
tggtgcaagatagcaaggagatgaagggttgtttaactaagcaaaaagct
tatgccatgctttctgagaaagagtctcccctgttggcagcatctcccct
cctgaatgcatgtaaaatgctctctcaaatactgccaagaatcgttcagt
gtcctcctggatcccccttcatgacagtcccctcctccatctgagcattg
cataaagatcaactggaacctaatgcagaacgcctgtctcctctgcgtcc
acaggcattctcctgccttcccactgcatctgctcctctacttgcctggc
tcctaccttgagctttcttctcattctgtgtcttgggtccaggttctcac
ccattaccaaactcacccatccaagagctcccacccctcccgctcccacg
aactaccattttactctgtatctacaagtcactctacttgagataatttc
acacataagtggaaccaaaaagtattgtccactctgaccttcctgaagct
gatttccttcaatgatagtcacttagcacttccgaatgtttgatgtactc
tgctgtagatagatgactctgggtatattgtgcctccagcacaatattgg
cggtatttattaccttggttgctttatattattctgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22254743_22255898
seq2: B6Ng01-008N11.b_47_1188

seq1  GAATTCATTGTCGTGTTGCTATGTCTGTCACATGTTGGTCTCCATGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCGTGTTGCTATGTCTGTCACATGTTGGTCTCCATGGAAC  50

seq1  TTGGTGATCTGAATGTGCTGTGGTGTACTGTTGCCAACTGTTTAACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATCTGAATGTGCTGTGGTGTACTGTTGCCAACTGTTTAACATCC  100

seq1  AAAGCCATTTGGAATTTGTTTACTCCAAGCCATTGTACCAGAACCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTGGAATTTGTTTACTCCAAGCCATTGTACCAGAACCATGTT  150

seq1  AGTAACAGAATTGCTGTGTGGAGTTGGAAATGAAATAATATAAAGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGAATTGCTGTGTGGAGTTGGAAATGAAATAATATAAAGAGCTT  200

seq1  CCAGGTATGCGCATGAACAGAAATGTGCAGCCCGGACTTTCAGCATCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATGCGCATGAACAGAAATGTGCAGCCCGGACTTTCAGCATCTGC  250

seq1  AGGTAAGTCTCTCCTTGTGTGGACCTGGTCAGCTTGGTGGACCATTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTCTCTCCTTGTGTGGACCTGGTCAGCTTGGTGGACCATTGAGG  300

seq1  GAGGATTCAGATTTATATTAGAGGTTCACCACTCTTCCTCCAAGTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCAGATTTATATTAGAGGTTCACCACTCTTCCTCCAAGTCTCTT  350

seq1  CATCCTTCTCTTTGATACTCAACCCACAGGTGAAGTTTTACCAAACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTCTTTGATACTCAACCCACAGGTGAAGTTTTACCAAACCCTG  400

seq1  CTGTAGACTCTGAGATAGGCGTGCAGAGTTTTCTGGAGTCCTCTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACTCTGAGATAGGCGTGCAGAGTTTTCTGGAGTCCTCTTCTTAT  450

seq1  TTTATTTCTCACTCAGGTCAGATACTGCTCTGTGACTTGAGAATAAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTCACTCAGGTCAGATACTGCTCTGTGACTTGAGAATAAAGAT  500

seq1  TGTTCTTGTTTTCTCAGCATGCAATGAATTTCACCTCTGTATGCTGATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGTTTTCTCAGCATGCAATGAATTTCACCTCTGTATGCTGATCC  550

seq1  AATTCTGTGGATATGTGATAAGAAGTGATCCCATCCCTATTTCACATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTGGATATGTGATAAGAAGTGATCCCATCCCTATTTCACATCTG  600

seq1  TATATCATCCCTTTGGCTGTCTAAGTGTTGCAGAAATCCCAACTGATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATCCCTTTGGCTGTCTAAGTGTTGCAGAAATCCCAACTGATTTA  650

seq1  AAAGTCCATTCACCTTTCTCGCTCCCCTACTTCTCCCTTACTACAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCATTCACCTTTCTCGCTCCCCTACTTCTCCCTTACTACAGGCTC  700

seq1  CTGGACTCAGTCCTGCCCAGCTGCATCGCACTGATCAGTTAGAACCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCAGTCCTGCCCAGCTGCATCGCACTGATCAGTTAGAACCAGAC  750

seq1  ATACAGTTTTTCCTAGAAAATAAACATTAGGTTATTTATTTCCCCTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTTTCCTAGAAAATAAACATTAGGTTATTTATTTCCCCTCTTG  800

seq1  AAAGTTGCATTGTTCCAGGTTAATTGTCCTATCAGATAATCTTCTCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCATTGTTCCAGGTTAATTGTCCTATCAGATAATCTTCTCTAGT  850

seq1  AGTGTTTAGTTCCCATTAAACATGCATTCTGAAATGTGCAATTATTTCCC  900
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGTTTAG-TCCCATTAAACATGCATTCTGAAATGTGCAA-TATTTCCC  898

seq1  CATTTCCTAGAGATGAAATG-TTTGCAGAGTAACTTTCAGCTAACA-TTT  948
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CATTTCCTAGAGATGAAATGTTTTGCAGAGTAACTTTCAGCTAACATTTT  948

seq1  TATTTTACTTTGTGTGTGTGTCTGCACATATATTCCAGGAATATATTGCT  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATTTTACTTTGTGTGTGTGTCTGCACATATA-TCCAGGAATATATTGCT  997

seq1  TGTATACCAGAGGATCTCAGGAGTTAGTTCTTACATGAACTCTGGTTATT  1048
      |||||| |||||||||||| ||||||||   |||||| ||||  | ||||
seq2  TGTATATCAGAGGATCTCA-GAGTTAGT--CTACATG-ACTCCTGGTATT  1043

seq1  GGGCTCACCAGCAAATACCTCTTCTGCTGAGTC-ATCCTCCTAGTAGTCT  1097
       ||||||||||| ||||||||||| ||||| || |||||||||| ||| |
seq2  -GGCTCACCAGC-AATACCTCTTCGGCTGAATCTATCCTCCTAG-AGT-T  1089

seq1  CAACTAACATAATTTAAATTCTCTTCTTTATTCTGTATAGTGTGCAAATG  1147
      | ||||||||||||  || |||||||||||||| || ||||||||  |||
seq2  C-ACTAACATAATT--AAATCTCTTCTTTATTC-GT-TAGTGTGC--ATG  1132

seq1  TTTA-GACAT  1156
      |||| |||||
seq2  TTTATGACAT  1142

seq1: chr19_22385453_22386544
seq2: B6Ng01-008N11.g_69_1157 (reverse)

seq1  TTTCAGAATAATATACAGCAAACCAAGGTAAATAAATA-CGCCAATAACT  49
      ||||||||||||||| ||| ||||||||| |||||||| ||||||||  |
seq2  TTTCAGAATAATATAAAGC-AACCAAGGT-AATAAATACCGCCAATA--T  46

seq1  GTTGCTGGA-GCAC-ATATACCCAGAGTCATCTATCTACAGCAAGAGTAC  97
        ||||||| |||| ||||||||||||||||||||||||||| |||||||
seq2  TGTGCTGGAGGCACAATATACCCAGAGTCATCTATCTACAGC-AGAGTAC  95

seq1  ATCAAACATTCGGAAGTGCTAAGTGAACTATCATTGAAGGAAATCAGCTT  147
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCAAACATTCGGAAGTGCTAAGTG-ACTATCATTGAAGGAAATCAGCTT  144

seq1  CAGGAAGGTCAGAGTGGACAATACTTTTTGGTTCCACTTATGTGTGAAAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTCAGAGTGGACAATACTTTTTGGTTCCACTTATGTGTGAAAT  194

seq1  TATCTCAAGTAGAGTGACTTGTAGATACAGAGTAAAATGGTAGTTCGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGTAGAGTGACTTGTAGATACAGAGTAAAATGGTAGTTCGTGG  244

seq1  GAGCGGGAGGGGTGGGAGCTCTTGGATGGGTGAGTTTGGTAATGGGTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGAGGGGTGGGAGCTCTTGGATGGGTGAGTTTGGTAATGGGTGAG  294

seq1  AACCTGGACCCAAGACACAGAATGAGAAGAAAGCTCAAGGTAGGAGCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACCCAAGACACAGAATGAGAAGAAAGCTCAAGGTAGGAGCCAG  344

seq1  GCAAGTAGAGGAGCAGATGCAGTGGGAAGGCAGGAGAATGCCTGTGGACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAGAGGAGCAGATGCAGTGGGAAGGCAGGAGAATGCCTGTGGACG  394

seq1  CAGAGGAGACAGGCGTTCTGCATTAGGTTCCAGTTGATCTTTATGCAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGACAGGCGTTCTGCATTAGGTTCCAGTTGATCTTTATGCAATG  444

seq1  CTCAGATGGAGGAGGGGACTGTCATGAAGGGGGATCCAGGAGGACACTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATGGAGGAGGGGACTGTCATGAAGGGGGATCCAGGAGGACACTGA  494

seq1  ACGATTCTTGGCAGTATTTGAGAGAGCATTTTACATGCATTCAGGAGGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTCTTGGCAGTATTTGAGAGAGCATTTTACATGCATTCAGGAGGGG  544

seq1  AGATGCTGCCAACAGGGGAGACTCTTTCTCAGAAAGCATGGCATAAGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGCCAACAGGGGAGACTCTTTCTCAGAAAGCATGGCATAAGCTT  594

seq1  TTTGCTTAGTTAAACAACCCTTCATCTCCTTGCTATCTTGCACCAAGAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAGTTAAACAACCCTTCATCTCCTTGCTATCTTGCACCAAGAGC  644

seq1  ATTTTCTTCCCTAAAAATTTTCTCACTTTATCCTATCCAGGACATTTCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCCCTAAAAATTTTCTCACTTTATCCTATCCAGGACATTTCAC  694

seq1  GTCGTTGTATGCATCAGAGGCAGGACATTGAGATAGGCCCAACTATAGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTGTATGCATCAGAGGCAGGACATTGAGATAGGCCCAACTATAGGG  744

seq1  ATATGGGGAAAGAAAGGAGCCCTCACCTTGGAGGTTGGTGAGGCTTGTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGAAAGAAAGGAGCCCTCACCTTGGAGGTTGGTGAGGCTTGTCA  794

seq1  CTAGCTAATGTGTAAGAAGTACACCCTGGTGTGAGGATGGGCTTTGTAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAATGTGTAAGAAGTACACCCTGGTGTGAGGATGGGCTTTGTAAG  844

seq1  GACTGTCACAGGTAGATGTCCCTGCATTAGTCATTTTGGTGGTTTCCAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCACAGGTAGATGTCCCTGCATTAGTCATTTTGGTGGTTTCCAAT  894

seq1  TAGATTGGGAAAACTTTGCCACAAAAATCTTCGATGATGTCTGCTCCCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGGAAAACTTTGCCACAAAAATCTTCGATGATGTCTGCTCCCTG  944

seq1  GCACTAAGAGTACAGATAACTGTACATGTCACTGCCTGAAGCAGACCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGAGTACAGATAACTGTACATGTCACTGCCTGAAGCAGACCTTC  994

seq1  CTACACTTTCGATCTTGTCAATCCTGGTCCTCCTGCTCTTCACACTGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTTCGATCTTGTCAATCCTGGTCCTCCTGCTCTTCACACTGCTC  1044

seq1  TCGCAGGACTGTCTCAGTACTCTGAAGTTATGATGGATTGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGGACTGTCTCAGTACTCTGAAGTTATGATGGATTGAATTC  1089