BAC Information

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BAC

Clone NameB6Ng01-010B05
Chromosome19 (Build37)
Map Location 6,948,703 - 7,109,251
singlet/doubletdoublet
Overlap genePrdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1
Upstream genePola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88
Downstream geneD930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B05.bB6Ng01-010B05.g
ACCDH845849DH845850
length839894
definitionDH845849|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B05, 5' end.DH845850|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,108,411 - 7,109,251)(6,948,703 - 6,949,593)
sequence
gaattcctaaaccggtttgaggaagccaaacgaacctatgaagaaggttt
aaaacatgaagccaataatctccagcttaaggagggcttgcagaacatgg
aggccaggttggcaggtgggtattcattcagcattcccttttttatttag
taggattaatttttttttttttttttttttttttgggttttttggttttt
cgagacagggtttctctgtatagccctggctgtcctggagctcactttgt
agaccaggctggcctcgaactcagaaattcgcctgcctctgcctcccgag
tgctgggattaaaggcgtgcgccaccacgcccggctggattaatttttaa
aacagtgctgtcctccccaaagtgaaggtatgtggtaggtgggctatgtt
tgtcatgaagactcaagttaatatttcatactactgtactggctttcatt
tggacagagaggaaattcatgaatccattcaacttgcctaatctatacca
aaagttggaaaacgaccccaggacaaggtcgctgctcagtgaccccacct
acagggagctcatagaacagctgcagaacaagccgtcagacctgggcacg
tgagtacaggccgcaagacagaagctctctgatgtgggccactgaggagg
ataggttttgtaattgcatttgtaaaaaagaaaagttggtcagcttgtaa
tagcaagacattcaggagtgttacttccaatcttgcccatgctaggcaaa
tgccatctctgagcttgtactcctgttataggtaaagatcatccaggtat
atgaaatctgttactgatgccaggtaaggagcagttgta
gaattcccactggaagataaagacaatgagcctccagctaggtgtgctgg
ggcaggcctgtgatcttagtaccaaggagatggagtcagaggataaggag
ttcaaagtcatccactcctcggctacatagcaaatttgaggccagcctgg
gctgcatgagattgtcaaaagaataagaggctggagagatgactcagagg
ttaagagccctgcctactcttccaaagggcctgtatccaattcccagagc
ccatgtgacagttgtatctccagtttcagaagatccaaagccctcttctg
gcctccaaggacagtgcacacatatgctgcacaaatatgcaagcaggcaa
aacacataaaataaaaataaaataaaaacacataaaataaaacatttttc
aattttcttgatttaaaaaaaaaaaaaaaagagcacttgctgctcttgca
gagagaggatccaggttcccttccaagcacccatgtggcagctcatagct
gtctgtaattccagctccaagggatctgatgctctcttctcatttccaag
agcaccaggcaggcacacagtacatacgtttatgccgggaaaactctcat
acacgtaaacaaaaataaaaaggaaggaaggaagggagcaccacggtacc
acatggtacacacttacagtcccaactgaggcagggggatcatgtgagct
cagagttcaagatttgcttgggcaaaatagtgagaacctatgcaagccag
gcggtggtggcgcatgcctttaatcccagcacttgggaggcagaggcagg
cagatttctgagttcgaggccaacctggtctacaaagtgagttccagggc
agccacggatacacagagacagaggtggggggttgggaaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7108411_7109251
seq2: B6Ng01-010B05.b_42_880 (reverse)

seq1  TACAACTGCTCCTTACCTTGGCACTCATTAACAGA-TTCCTATACCTGGA  49
      ||||||||||||||||| ||||| ||| ||||||| ||| ||||||||||
seq2  TACAACTGCTCCTTACC-TGGCA-TCAGTAACAGATTTCATATACCTGGA  48

seq1  TGATCCTTACCTACTAACAGGAGTACAAGCTCAGAGATGGCATTTGCCTA  99
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTACCTA-TAACAGGAGTACAAGCTCAGAGATGGCATTTGCCTA  97

seq1  GCATGGGCAAGATTGGAAGTAACACTCCTGAATGTCTTGCTATTACAAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCAAGATTGGAAGTAACACTCCTGAATGTCTTGCTATTACAAGC  147

seq1  TGACCAACTTTTCTTTTTTACAAATGCAATTACAAAACCTATCCTCCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACTTTTCTTTTTTACAAATGCAATTACAAAACCTATCCTCCTCA  197

seq1  GTGGCCCACATCAGAGAGCTTCTGTCCTGCGGCCTGTACTCACGTGCCCA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGGCCCACATCAGAGAGCTTCTGTCTTGCGGCCTGTACTCACGTGCCCA  247

seq1  GGTCTGACGGCTTGTTCTGCAGCTGTTCTATGAGCTCCCTGTAGGTGGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACGGCTTGTTCTGCAGCTGTTCTATGAGCTCCCTGTAGGTGGGG  297

seq1  TCACTGAGCAGCGACCTTGTCCTGGGGTCGTTTTCCAACTTTTGGTATAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGCAGCGACCTTGTCCTGGGGTCGTTTTCCAACTTTTGGTATAG  347

seq1  ATTAGGCAAGTTGAATGGATTCATGAATTTCCTCTCTGTCCAAATGAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAAGTTGAATGGATTCATGAATTTCCTCTCTGTCCAAATGAAAG  397

seq1  ACAGTACAGTAGTATGAAATATTAACTTGAGTCTTCATGACAAACATAGC  449
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACAGTAGTATGAAATATTAACTTGAGTCTTCATGACAAACATAGC  447

seq1  CCACCTACCACATACCTTCACTTTGGGGAGGACAGCACTGTTTTAAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACCACATACCTTCACTTTGGGGAGGACAGCACTGTTTTAAAAAT  497

seq1  TAATCCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  547

seq1  GCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTG  597

seq1  AGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCA  647

seq1  AAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAATTAATCCTACTAAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAATTAATCCTACTAAATAA  697

seq1  AAAAGGGAATGCTGAATGAATACCCACCTGCCAACCTGGCCTCCATGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAATGCTGAATGAATACCCACCTGCCAACCTGGCCTCCATGTTC  747

seq1  TGCAAGCCCTCCTTAAGCTGGAGATTATTGGCTTCATGTTTTAAACCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCCTCCTTAAGCTGGAGATTATTGGCTTCATGTTTTAAACCTTC  797

seq1  TTCATAGGTTCGTTTGGCTTCCTCAAACCGGTTTAGGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGGTTCGTTTGGCTTCCTCAAACCGGTTTAGGAATTC  839

seq1: chr19_6948703_6949593
seq2: B6Ng01-010B05.g_65_958

seq1  GAATTCCCACTGGAAGATAAAGACAATGAGCCTCCAGCTAGGTGTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTGGAAGATAAAGACAATGAGCCTCCAGCTAGGTGTGCTGG  50

seq1  GGCAGGCCTGTGATCTTAGTACCAAGGAGATGGAGTCAGAGGATAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCCTGTGATCTTAGTACCAAGGAGATGGAGTCAGAGGATAAGGAG  100

seq1  TTCAAAGTCATCCACTCCTCGGCTACATAGCAAATTTGAGGCCAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCATCCACTCCTCGGCTACATAGCAAATTTGAGGCCAGCCTGG  150

seq1  GCTGCATGAGATTGTCAAAAGAATAAGAGGCTGGAGAGATGACTCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGAGATTGTCAAAAGAATAAGAGGCTGGAGAGATGACTCAGAGG  200

seq1  TTAAGAGCCCTGCCTACTCTTCCAAAGGGCCTGTATCCAATTCCCAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCCCTGCCTACTCTTCCAAAGGGCCTGTATCCAATTCCCAGAGC  250

seq1  CCATGTGACAGTTGTATCTCCAGTTTCAGAAGATCCAAAGCCCTCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGACAGTTGTATCTCCAGTTTCAGAAGATCCAAAGCCCTCTTCTG  300

seq1  GCCTCCAAGGACAGTGCACACATATGCTGCACAAATATGCAAGCAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGGACAGTGCACACATATGCTGCACAAATATGCAAGCAGGCAA  350

seq1  AACACATAAAATAAAAATAAAATAAAAACACATAAAATAAAACATTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAAAATAAAAATAAAATAAAAACACATAAAATAAAACATTTTTC  400

seq1  AATTTTCTTGATTTAAAAAAAAAAAAAAAAGAGCACTTGCTGCTCTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTGATTTAAAAAAAAAAAAAAAAGAGCACTTGCTGCTCTTGCA  450

seq1  GAGAGAGGATCCAGGTTCCCTTCCAAGCACCCATGTGGCAGCTCATAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGATCCAGGTTCCCTTCCAAGCACCCATGTGGCAGCTCATAGCT  500

seq1  GTCTGTAATTCCAGCTCCAAGGGATCTGATGCTCTCTTCTCATTTCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAATTCCAGCTCCAAGGGATCTGATGCTCTCTTCTCATTTCCAAG  550

seq1  AGCACCAGGCAGGCACACAGTACATACGTTTATGCCGGGAAAACTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGCAGGCACACAGTACATACGTTTATGCCGGGAAAACTCTCAT  600

seq1  ACACGTAAACAAAAATAAAAAGGAAGGAAGGAAGGGAGCACCACGGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTAAACAAAAATAAAAAGGAAGGAAGGAAGGGAGCACCACGGTACC  650

seq1  ACATGGTACACACTTACAGTCCCAACTGAGGCAGGGGGATCATGTGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTACACACTTACAGTCCCAACTGAGGCAGGGGGATCATGTGAGCT  700

seq1  CAGAGTTCAAGATTTGCTTGGGCAAAATAGTGAGAACCTATGCAAGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAAGATTTGCTTGGGCAAAATAGTGAGAACCTATGCAAGCCAG  750

seq1  GCGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  800

seq1  CAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGTTCCAGGGC  850

seq1  AGCCACGGATACACAGAGACAGAGGTGGGGG--TGGG-AGGAGG  891
      |||||||||||||||||||||||||||||||  |||| ||||||
seq2  AGCCACGGATACACAGAGACAGAGGTGGGGGGTTGGGAAGGAGG  894