BAC Information

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BAC

Clone NameB6Ng01-010B17
Chromosome19 (Build37)
Map Location 27,807,276 - 27,965,489
singlet/doubletdoublet
Overlap geneLOC100042612, Rfx3, LOC666997
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC433235, Glis3, EG434460, EG627788, Slc1a1, LOC545262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010B17.bB6Ng01-010B17.g
ACCDH845873DH845874
length1,1221,080
definitionDH845873|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B17, 5' end.DH845874|Mus musculus domesticus DNA, BAC clone: B6Ng01-010B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,807,276 - 27,808,315)(27,964,410 - 27,965,489)
sequence
gaattctgagggtactggatagttcatattaatgttcctcctataaagct
tcagatcccttcagctccctggatctctggctccttcattggggaccttg
tgctctgtccagtagatgactgtgagcatccacttctgtatttgccaggt
actggcagagcctcacaggagacagctatatcagactcctgtcagcagtc
tcttgttggcaactgcctagtgtctgggtttggtggttgtttatgggatg
gaaatggtactggcacaactggcggttatcatgtagaagaatgagaattg
atccattcttatctccttgtacaatgctcaagtctaagtggatcaaggaa
ctccacataaaaccagagacactgaagcttatagaggagaaagtggggaa
aagcctcgaagatgtgggcacagggggaaaattcctgaacagaacagcaa
tggcttgtgttgtaagagtgagaatcgacaaatgggacctcataaaattg
caaagcttctataaggcaaaagacactgtcaataagacaaaaaggccgcc
aacagattgggaaaggatctttaccaattctaaatccaataggggaataa
tacccaagttggagtttattaagaaagacttttagcatagatttcagtac
aggaattaataagaggagattagggaacggggatagaacacatttaattg
aggctgagggcgtttcaagagaaattcatactcaaatgccttagcaacag
gcatatgtacaatttcggtggcttatcaagtgactttgttcaaatgactc
taaggaacttttcctatcctttattttcctcttcctcctcctcttcttct
ttcttctttggtaatgaaaaaaagtgttttttgagagcactgggtagatg
ggtaggatatacctgatacttgaaatcacagccacagagttgcatagaga
gatagactcatttactataaggaattttatagtttgcttatgagttctcg
aaaaatacaggtttagtctagcaaaggaaagggcctactggtaaccttag
tatctttagatggtctcatgttatctatagcattctatgcctaaccagtg
tgatcttgtgaagtacatcaca
gaattcacctaattaaccagccctgttgttgtaggtgtaattgactttat
aaagtaatctgaataactccatttacttgaggggattaatctggctctca
taatgggatccgctccaaggggtagccacactatcatagatgttatacaa
aattaggaatcaagtagggattttattcaagatgatgtacagaaagagag
acaagaaatgaaggcagacatggcaggctttcatgctgcctttagttatc
tttatctcttgggctcaagtgaggaaccagtgccttttaagtaaaaagat
agttctaagaaactatcatattagagcttacaaaggacattttcccagag
ggaatgatttttttttaagccaagatttgctaagattttaagtgaactag
aaggaagagtttctgttgttatttattttttaataaaagaaaacataggc
aggagtttataagaccaggtacaaagaaaacataggcaggagtgtataag
accagttagtacagttaggactagggaaaggaggagaaagggatttcaga
gaggagttaacagatgtgatctgacattcctcagaggccattacctccct
aacgtctcccttgctggacagcattgatcccacctctctgtcctcatggt
cacatctgtttttttctgtacctgaatgttaggagagtaagttgtacact
ccttgtattttggtcatgctcaatgaataattgtgacaaatgtggtagta
aattttactagtgacttctgtttcccatctggagttatatgggtccttaa
ttcaaagataaaaatctcccatcccttgtaaaacttattcagagtcccct
cctgaatatgcctcttgtattcataggaacagtgagggcagcctccagaa
atgtgtgggccaacatagacaataatttttagtttggtcataaagaaagc
aagcaaagtagccaagtatgaaagaagactgatgtagggtcatagggaaa
taatatcttcttacctatcatcttcaatcaacagtcctccgggttctaca
attgaatggtctggtgaattgtggagtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27807276_27808315
seq2: B6Ng01-010B17.b_154_1164

seq1  GTAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGTACTGGCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGTACTGGCAGAGC  50

seq1  CTCACAGGAGACAGCTATATCAGACTCCTGTCAGCAGTCTCTTGTTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGAGACAGCTATATCAGACTCCTGTCAGCAGTCTCTTGTTGGCA  100

seq1  ACTGCCTAGTGTCTGGGTTTGGTGGTTGTTTATGGGATGGAAATGGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAGTGTCTGGGTTTGGTGGTTGTTTATGGGATGGAAATGGTACT  150

seq1  GGCACAACTGGCGGTTATCATGTAGAAGAATGAGAATTGATCCATTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAACTGGCGGTTATCATGTAGAAGAATGAGAATTGATCCATTCTTA  200

seq1  TCTCCTTGTACAATGCTCAAGTCTAAGTGGATCAAGGAACTCCACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGTACAATGCTCAAGTCTAAGTGGATCAAGGAACTCCACATAAA  250

seq1  ACCAGAGACACTGAAGCTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACACTGAAGCTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAG  300

seq1  ATGTGGGCACAGGGGGAAAATTCCTGAACAGAACAGCAATGGCTTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGCACAGGGGGAAAATTCCTGAACAGAACAGCAATGGCTTGTGTT  350

seq1  GTAAGAGTGAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTGAGAATCGACAAATGGGACCTCATAAAATTGCAAAGCTTCTA  400

seq1  TAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCGCCAACAGATTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCGCCAACAGATTGGG  450

seq1  AAAGGATCTTTACCAATTCTAAATCCAATAGGGGAATAATACCCAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTTTACCAATTCTAAATCCAATAGGGGAATAATACCCAAGTTG  500

seq1  GAGTTTATTAAGAAAGACTTTTAGCATAGATTTCAGTACAGGAATTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATTAAGAAAGACTTTTAGCATAGATTTCAGTACAGGAATTAATA  550

seq1  AGAGGAGATTAGGGAACGGGGATAGAACACATTTAATTGAGGCTGAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGATTAGGGAACGGGGATAGAACACATTTAATTGAGGCTGAGGGC  600

seq1  GTTTCAAGAGAAATTCATACTCAAATGCCTTAGCAACAGGCATATGTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAGAGAAATTCATACTCAAATGCCTTAGCAACAGGCATATGTACA  650

seq1  ATTTCGGTGGCTTATCAAGTGACTTTGTTCAAATGACTCTAAGGAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGGTGGCTTATCAAGTGACTTTGTTCAAATGACTCTAAGGAACTTT  700

seq1  TCCTATCCTTTTATTTTCCTCTTCCTCCTCCTCTTCTTCTTTCTTCTTTT  750
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTATCC-TTTATTTTCCTCTTCCTCCTCCTCTTCTTCTTTCTTC-TTT  748

seq1  GGTAAATGAAAAAAAAGGTGTTTTTTGAGAGGCACTGGGTAGATGGGTAG  800
      ||| |||||||||||  ||||||||||||| |||||||||||||||||||
seq2  GGT-AATGAAAAAAA--GTGTTTTTTGAGA-GCACTGGGTAGATGGGTAG  794

seq1  GATTATACCTGATAACTTGAAATCACAGGCCACAAGAGTTGCATAAGAGA  850
      || |||||||||| ||||||||||||| ||||| |||||||||| |||||
seq2  GA-TATACCTGAT-ACTTGAAATCACA-GCCAC-AGAGTTGCAT-AGAGA  839

seq1  GATAAGACTCATTTTACTATAAAGGAAATTTATAGATTGCTTATGAGGTT  900
      ||| ||||||| |||||||| |||||| ||||||| |||||||||| |||
seq2  GAT-AGACTCA-TTTACTAT-AAGGAATTTTATAGTTTGCTTATGA-GTT  885

seq1  CTCGGAAAATTACAGGTTTATGTCTAGCAAAGGAGAGGGCCATACTGTAA  950
      ||| ||||| |||||||||| ||||||||||||| |||||| |||||   
seq2  CTC-GAAAAATACAGGTTTA-GTCTAGCAAAGGAAAGGGCC-TACTG-GT  931

seq1  AACCTTAAGTATGCCTTAAGATGGTCCATTGTTATTCTTATGTAATCTAT  1000
      |||||| |||||  ||| ||||||||   ||||| |||   | | |||||
seq2  AACCTT-AGTAT--CTTTAGATGGTCTCATGTTA-TCTATAGCATTCTAT  977

seq1  GTCTTAGCCAGGTTTGTGATCTTGTGATGTAAACATCACA  1040
      | | || ||||   ||||||||||||| ||  ||||||||
seq2  G-CCTAACCAG---TGTGATCTTGTGAAGT--ACATCACA  1011

seq1: chr19_27964410_27965489
seq2: B6Ng01-010B17.g_66_1145 (reverse)

seq1  TACACTCAACAATTCACCCAGACCACTCAAATGGTAGAAACCGGA-GACT  49
      ||||||| |||||||| |||||||| || ||| |||||| ||||| ||||
seq2  TACACTCCACAATTCA-CCAGACCATTC-AATTGTAGAACCCGGAGGACT  48

seq1  GTTTGATGGAAGGTTGATA-GTAAG-AGATA-TATATCCCTATGACCCCT  96
      | ||||| ||| | ||||| ||||| ||||| ||| ||||||||| ||||
seq2  G-TTGATTGAA-GATGATAGGTAAGAAGATATTATTTCCCTATGA-CCCT  95

seq1  ACATCAGTC-TCTTTCATACTTGGCTACTTTGCTTGCTTTCTTTATGACC  145
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCTTCTTTCATACTTGGCTACTTTGCTTGCTTTCTTTATGACC  145

seq1  AAACTAAAAATTATTGTCTATGTTGG-CCACACATTTCTGGAGGCTGCCC  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACTAAAAATTATTGTCTATGTTGGCCCACACATTTCTGGAGGCTGCCC  195

seq1  TCACTGTTCCTATTGAATACAAGAGGCATATTCAGGAGGGGACTCTGAAT  244
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTCCTA-TGAATACAAGAGGCATATTCAGGAGGGGACTCTGAAT  244

seq1  AAGTTTTACAAGGGATGGGAGATTTTTATCTTTGAATTAAGGACCCATAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTACAAGGGATGGGAGATTTTTATCTTTGAATTAAGGACCCATAT  294

seq1  AACTCCAGATGGGAAACAGAAGTCACTAGTAAAATTTACTACCACATTTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGATGGGAAACAGAAGTCACTAGTAAAATTTACTACCACATTTG  344

seq1  TCACAATTATTCATTGAGCATGACCAAAATACAAGGAGTGTACAACTTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTATTCATTGAGCATGACCAAAATACAAGGAGTGTACAACTTAC  394

seq1  TCTCCTAACATTCAGGTACAGAAAAAAACAGATGTGACCATGAGGACAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAACATTCAGGTACAGAAAAAAACAGATGTGACCATGAGGACAGA  444

seq1  GAGGTGGGATCAATGCTGTCCAGCAAGGGAGACGTTAGGGAGGTAATGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGATCAATGCTGTCCAGCAAGGGAGACGTTAGGGAGGTAATGGC  494

seq1  CTCTGAGGAATGTCAGATCACATCTGTTAACTCCTCTCTGAAATCCCTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAATGTCAGATCACATCTGTTAACTCCTCTCTGAAATCCCTTT  544

seq1  CTCCTCCTTTCCCTAGTCCTAACTGTACTAACTGGTCTTATACACTCCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTTTCCCTAGTCCTAACTGTACTAACTGGTCTTATACACTCCTG  594

seq1  CCTATGTTTTCTTTGTACCTGGTCTTATAAACTCCTGCCTATGTTTTCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTTTCTTTGTACCTGGTCTTATAAACTCCTGCCTATGTTTTCTT  644

seq1  TTATTAAAAAATAAATAACAACAGAAACTCTTCCTTCTAGTTCACTTAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAAATAAATAACAACAGAAACTCTTCCTTCTAGTTCACTTAAA  694

seq1  ATCTTAGCAAATCTTGGCTTAAAAAAAAATCATTCCCTCTGGGAAAATGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCAAATCTTGGCTTAAAAAAAAATCATTCCCTCTGGGAAAATGT  744

seq1  CCTTTGTAAGCTCTAATATGATAGTTTCTTAGAACTATCTTTTTACTTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTAAGCTCTAATATGATAGTTTCTTAGAACTATCTTTTTACTTAA  794

seq1  AAGGCACTGGTTCCTCACTTGAGCCCAAGAGATAAAGATAACTAAAGGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTGGTTCCTCACTTGAGCCCAAGAGATAAAGATAACTAAAGGCA  844

seq1  GCATGAAAGCCTGCCATGTCTGCCTTCATTTCTTGTCTCTCTTTCTGTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAGCCTGCCATGTCTGCCTTCATTTCTTGTCTCTCTTTCTGTAC  894

seq1  ATCATCTTGAATAAAATCCCTACTTGATTCCTAATTTTGTATAACATCTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTGAATAAAATCCCTACTTGATTCCTAATTTTGTATAACATCTA  944

seq1  TGATAGTGTGGCTACCCCTTGGAGCGGATCCCATTATGAGAGCCAGATTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGTGGCTACCCCTTGGAGCGGATCCCATTATGAGAGCCAGATTA  994

seq1  ATCCCCTCAAGTAAATGGAGTTATTCAGATTACTTTATAAAGTCAATTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTCAAGTAAATGGAGTTATTCAGATTACTTTATAAAGTCAATTAC  1044

seq1  ACCTACAACAACAGGGCTGGTTAATTAGGTGAATTC  1080
      ||||||||||||||||||||||||||||||||||||
seq2  ACCTACAACAACAGGGCTGGTTAATTAGGTGAATTC  1080