BAC Information

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BAC

Clone NameB6Ng01-012D21
Chromosome19 (Build37)
Map Location 46,862,953 - 47,031,001
singlet/doubletdoublet
Overlap geneCnnm2, Nt5c2
Upstream geneKcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt
Downstream geneIna, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D21.bB6Ng01-012D21.g
ACCDH847388DH847389
length1,1221,062
definitionDH847388|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D21, 5' end.DH847389|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,029,873 - 47,031,001)(46,862,953 - 46,864,020)
sequence
gaattcactatgtaaagtagcttacctcacactgatccttgtggctgcct
gtagttgactggactaggctggcctccaattccaggagatcctctgtttt
taccttccaagggctggggttctaggaagtgccaccatgccactcccacc
ttttaaatacaattctcttcttgattctctacctggcaacttactccatt
ttctgtcattgatttttgttttgttgtttgttttgtttctgagacaggct
cttatagaaccccggctagcctagacaatccttcctctgtctctcaagta
aaggggatttgcactcagctctgcaactgatttctaaggcttctttcagt
tatggtattgcgaatagcttgtgtggttttcattatttttttttatgtat
caattttacatgtttatcccacttttcatttgaacattttaattttgtaa
aaaattacatggtggtgtaatgagctcttttataactttcacctggattt
accagtaaacaacactggccattttactttatattttttgcatataattt
atatgtttttaaaaaatctatattttttgagtatatgtgaagggtgcatc
tgtgctattggttgtgagagtagcgatctctcctccaaccatgagggatt
gggataaattcgggttgtcatgcttggcagcgaatcccctgcctttactt
cctagccatctgcttggctctacatacattgttttaaatttagaaccact
taaaaataagttgtaaagacaacttactcttgaaaattttgatttgaata
tcataaggagactgccctacaaaactacgatactactatcactttaaaaa
ttagtgtaaaggggctggtgagatggctcagtgggtaagagcacctgact
gctcttccgaaggtctggagttcaaatcccagcaaccacatgatggtcca
caaccatccgtaacaagatctggcgccctcttctggagtgtctgaagaca
gctacagtgtacttacatataataaataaataatctttaaaaaaaaaaaa
aatatgtacatgggactggaaagatgaatcagtgtagtggtactagtcgg
tcttctaagggaccagttcagt
gaattcacttgtatatcagtggggaccatgagttctggttgcccaaggaa
ctcatgcctaggatggcataggatacatgcagaagctctggggacgtgtt
gtctaggtctctaatcagcacaactgtgacgaaaatatcattctgagttt
aagcaagagctctgctggaagtctatacggtggccagtagggactggtgg
tatgctgctgacgccatggcctagttggtggctgcattacatggaaacaa
ctggaaatgacagctggaggcattgcctcctggtgccacacagagaaaac
acaacactagagtgcgttgagttcccggctatcttgaggaaatttgctga
actttaaaacgtcactattctacctgcctgttatgggctgaggcatgaga
tttctcagtgaagaattataggaaataaaaatctaaagacaattttagtt
tgagggactacttagacttatcactcacaatgtttagcctagtgaaagag
gagagtttttaggtagcaagaaccccctttattgaactgttagtgcatgc
tggggcctgctttcctttatttggcagaagaactatgaagcagttactgc
tagttctggtttacagtctggacaagtttataaagaccaagttacctact
caggtggcagtcactcagcgagtggcggagttacaggtgaccattaaagt
gctcaaagacacttagcccttctgcagttctgtagataaaattgtattgt
tgtggcttgtttgttgatgttgagagaggtcttattatgtagccctggct
ggccttgaactcacagatctgcttgcctctgcgtttctgagtactgggat
cccaggcatgcagcacagcatcccagtttagaactgtgtttcgggtcatc
tttatgcgcatgtttttgtagtttatgaaccattacaaatacctgtaaga
cacatggacttgacgtgcttcatctaaagttcccgctgccctcacagttc
tgaggcccccaactcagctgctgtgttcgtgtttgatctgtgaggcgtat
gagatgatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_47029873_47031001
seq2: B6Ng01-012D21.b_41_1162 (reverse)

seq1  ACTGAACCTGGGTCCCCTAGAAGAACGACTAGTACAACTAACAACTGAAT  50
      |||||||   |||||| ||||||| |||||||||| ||||   ||||| |
seq2  ACTGAAC--TGGTCCCTTAGAAGACCGACTAGTACCACTA--CACTGATT  46

seq1  CATCTCTCCAGTCCAATGTTACACTAATTTTTTTTTTTTTAAAGATTTAT  100
      ||||| |||||||| ||| |||| || |||||||||||||||||| ||||
seq2  CATCTTTCCAGTCCCATG-TACA-TATTTTTTTTTTTTTTAAAGA-TTAT  93

seq1  TTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAG  143

seq1  AGGGCGCCAGATCTTGTTACGGATGGTTGTGGGCCATCATGTGGTTGCTG  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGGCGCCAGATCTTGTTACGGATGGTTGTGGACCATCATGTGGTTGCTG  193

seq1  GGATTTGAACTCCAGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACTCCAGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACT  243

seq1  GAGCCATCTCACCAGCCCCTTTACACTAATTTTTAAAGTGATAGTAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCACCAGCCCCTTTACACTAATTTTTAAAGTGATAGTAGTAT  293

seq1  CGTAGTTTTGTAGGGCAGTCTCCTTATGATATTCAAATCAAAATTTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTTTTGTAGGGCAGTCTCCTTATGATATTCAAATCAAAATTTTCAA  343

seq1  GAGTAAGTTGTCTTTACAACTTATTTTTAAGTGGTTCTAAATTTAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGTTGTCTTTACAACTTATTTTTAAGTGGTTCTAAATTTAAAACA  393

seq1  ATGTATGTAGAGCCAAGCAGATGGCTAGGAAGTAAAGGCAGGGGATTCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTAGAGCCAAGCAGATGGCTAGGAAGTAAAGGCAGGGGATTCGC  443

seq1  TGCCAAGCATGACAACCCGAATTTATCCCAATCCCTCATGGTTGGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCATGACAACCCGAATTTATCCCAATCCCTCATGGTTGGAGGAG  493

seq1  AGATCGCTACTCTCACAACCAATAGCACAGATGCACCCTTCACATATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGCTACTCTCACAACCAATAGCACAGATGCACCCTTCACATATACT  543

seq1  CAAAAAATATAGATTTTTTAAAAACATATAAATTATATGCAAAAAATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATATAGATTTTTTAAAAACATATAAATTATATGCAAAAAATATA  593

seq1  AAGTAAAATGGCCAGTGTTGTTTACTGGTAAATCCAGGTGAAAGTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATGGCCAGTGTTGTTTACTGGTAAATCCAGGTGAAAGTTATAA  643

seq1  AAGAGCTCATTACACCACCATGTAATTTTTTACAAAATTAAAATGTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCATTACACCACCATGTAATTTTTTACAAAATTAAAATGTTCAA  693

seq1  ATGAAAAGTGGGATAAACATGTAAAATTGATACATAAAAAAAAATAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGTGGGATAAACATGTAAAATTGATACATAAAAAAAAATAATGA  743

seq1  AAACCACACAAGCTATTCGCAATACCATAACTGAAAGAAGCCTTAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACAAGCTATTCGCAATACCATAACTGAAAGAAGCCTTAGAAAT  793

seq1  CAGTTGCAGAGCTGAGTGCAAATCCCCTTTACTTGAGAGACAGAGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCAGAGCTGAGTGCAAATCCCCTTTACTTGAGAGACAGAGGAAGG  843

seq1  ATTGTCTAGGCTAGCCGGGGTTCTATAAGAGCCTGTCTCAGAAACAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAGGCTAGCCGGGGTTCTATAAGAGCCTGTCTCAGAAACAAAAC  893

seq1  AAACAACAAAACAAAAATCAATGACAGAAAATGGAGTAAGTTGCCAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAAAACAAAAATCAATGACAGAAAATGGAGTAAGTTGCCAGGTA  943

seq1  GAGAATCAAGAAGAGAATTGTATTTAAAAGGTGGGAGTGGCATGGTGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAGAAGAGAATTGTATTTAAAAGGTGGGAGTGGCATGGTGGCA  993

seq1  CTTCCTAGAACCCCAGCCCTTGGAAGGTAAAAACAGAGGATCTCCTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAACCCCAGCCCTTGGAAGGTAAAAACAGAGGATCTCCTGGAA  1043

seq1  TTGGAGGCCAGCCTAGTCCAGTCAACTACAGGCAGCCACAAGGATCAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCCAGCCTAGTCCAGTCAACTACAGGCAGCCACAAGGATCAGTG  1093

seq1  TGAGGTAAGCTACTTTACATAGTGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  TGAGGTAAGCTACTTTACATAGTGAATTC  1122

seq1: chr19_46862953_46864020
seq2: B6Ng01-012D21.g_65_1126

seq1  GAATTCACTTGTATATCAGTGGGGACCATGAGTTCTGGTTGCCCAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGTATATCAGTGGGGACCATGAGTTCTGGTTGCCCAAGGAA  50

seq1  CTCATGCCTAGGATGGCATAGGATACATGCAGAAGCTCTGGGGACGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCCTAGGATGGCATAGGATACATGCAGAAGCTCTGGGGACGTGTT  100

seq1  GTCTAGGTCTCTAATCAGCACAACTGTGACGAAAATATCATTCTGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGTCTCTAATCAGCACAACTGTGACGAAAATATCATTCTGAGTTT  150

seq1  AAGCAAGAGCTCTGCTGGAAGTCTATACGGTGGCCAGTAGGGACTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGCTCTGCTGGAAGTCTATACGGTGGCCAGTAGGGACTGGTGG  200

seq1  TATGCTGCTGACGCCATGGCCTAGTTGGTGGCTGCATTACATGGAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTGACGCCATGGCCTAGTTGGTGGCTGCATTACATGGAAACAA  250

seq1  CTGGAAATGACAGCTGGAGGCATTGCCTCCTGGTGCCACACAGAGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGACAGCTGGAGGCATTGCCTCCTGGTGCCACACAGAGAAAAC  300

seq1  ACAACACTAGAGTGCGTTGAGTTCCCGGCTATCTTGAGGAAATTTGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTAGAGTGCGTTGAGTTCCCGGCTATCTTGAGGAAATTTGCTGA  350

seq1  ACTTTAAAACGTCACTATTCTACCTGCCTGTTATGGGCTGAGGCATGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAACGTCACTATTCTACCTGCCTGTTATGGGCTGAGGCATGAGA  400

seq1  TTTCTCAGTGAAGAATTATAGGAAATAAAAATCTAAAGACAATTTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGTGAAGAATTATAGGAAATAAAAATCTAAAGACAATTTTAGTT  450

seq1  TGAGGGACTACTTAGACTTATCACTCACAATGTTTAGCCTAGTGAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACTACTTAGACTTATCACTCACAATGTTTAGCCTAGTGAAAGAG  500

seq1  GAGAGTTTTTAGGTAGCAAGAACCCCCTTTATTGAACTGTTAGTGCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTTAGGTAGCAAGAACCCCCTTTATTGAACTGTTAGTGCATGC  550

seq1  TGGGGCCTGCTTTCCTTTATTTGGCAGAAGAACTATGAAGCAGTTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTGCTTTCCTTTATTTGGCAGAAGAACTATGAAGCAGTTACTGC  600

seq1  TAGTTCTGGTTTACAGTCTGGACAAGTTTATAAAGACCAAGTTACCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGGTTTACAGTCTGGACAAGTTTATAAAGACCAAGTTACCTACT  650

seq1  CAGGTGGCAGTCACTCAGCGAGTGGCGGAGTTACAGGTGACCATTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCAGTCACTCAGCGAGTGGCGGAGTTACAGGTGACCATTAAAGT  700

seq1  GCTCAAAGACACTTAGCCCTTCTGCAGTTCTGTAGATAAAATTGTATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGACACTTAGCCCTTCTGCAGTTCTGTAGATAAAATTGTATTGT  750

seq1  TGTGGCTTGTTTGTTGATGTTGAGAGAGGTCTTATTATGTAGCCCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTGTTTGTTGATGTTGAGAGAGGTCTTATTATGTAGCCCTGGCT  800

seq1  GGCCTTGAACTCACAGATCTGCTTGCCTCTGCG-TTCTGAGTACTGGGAT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCCTTGAACTCACAGATCTGCTTGCCTCTGCGTTTCTGAGTACTGGGAT  850

seq1  CCCAGGCATGCAGCACAGCATCCCAGTTTAGAACTGTGTTTCGGGTCATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCATGCAGCACAGCATCCCAGTTTAGAACTGTGTTTCGGGTCATC  900

seq1  TTTAATGCGCATGTTTTTGTAAGTTTATGAACCATTAACAAATACCTGTA  949
      ||| |||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TTT-ATGCGCATGTTTTTGT-AGTTTATGAACCATT-ACAAATACCTGTA  947

seq1  AGACAGCAATGGACTTGACGTGGCTTCATCTAAAGTTCCCGCTGCCC-CA  998
      |||||   ||||||||||||| ||||||||||||||||||||||||| ||
seq2  AGACA--CATGGACTTGACGT-GCTTCATCTAAAGTTCCCGCTGCCCTCA  994

seq1  CAGTTCTGAGGCCCCC-ACTCAGCTGCTGTGTTCAGTGTTTTGATCTGTG  1047
      |||||||||||||||| ||||||||||||||||| ||| |||||||||||
seq2  CAGTTCTGAGGCCCCCAACTCAGCTGCTGTGTTC-GTG-TTTGATCTGTG  1042

seq1  AGGCGTATGCAGATGATGCAG  1068
      ||||||||| |||||||||||
seq2  AGGCGTATG-AGATGATGCAG  1062