BAC Information

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BAC

Clone NameB6Ng01-015B05
Chromosome19 (Build37)
Map Location 48,896,889 - 49,033,636
singlet/doubletdoublet
Overlap genenone
Upstream geneD19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015B05.bB6Ng01-015B05.g
ACCDH849435DH849436
length1,073894
definitionDH849435|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B05, 5' end.DH849436|Mus musculus domesticus DNA, BAC clone: B6Ng01-015B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,896,889 - 48,897,970)(49,032,741 - 49,033,636)
sequence
gaattcctgcatcacagtgacctcttatttttcaaatgcaaattaggtta
ctccctattagtgaaattaaaatggtgttacctgattcaaagctcttaag
ataaaaaaaaaaaaaaatgtttccaggcagtggcggcacatgcctttaat
cccagcacttgggaggcagaggcaggtggatctttgtgtttgaggccagc
ctggtctacagagtgagttccaggacagccagggctacccagagaaaccc
tgtcttgaaaaaagaaagatggttgagttagccacctcaaaatcatccat
tggacaaaacaaaggattagcattttacactgtggccccatggccccata
gaatttctgtctgtaagattgtcaaataggctaaagacttctacctacca
tctgaaacaatgaccaacaactataaatttggctcacgcataaggaccct
cggagcagatattcatatcttacctaacatccaattgctgtcagaaattc
atgctgtttcagaaatgttccagccttgaagtctgacttcacctagtctt
ttgaagccaccacactgctttttccagtgaatcctcatttactactaaga
ttttctttttccagtgttaagtcagagctatttaaagacagcagagaata
ggccccaattctcttgcacctgatgcaaagcaggtgtttcttaaatatct
gttaaaaagtgttagagttacagtcataagggggcagtggttttggtcca
tgtacatattaacaagcatgcatttctgttataatgaagtctaattttta
agacctctaacctcacagttataaagctacctgcagttcctatgaggccc
agctggaacctcacgagttattaggggactccatggtcttctatcttctc
agatatcagtgcttgctgaacactacattcttcttgcttctaggtccttc
ctcttgtgcttggaatgatggagccttaaacgattgactgtaactatcac
ccttttccttctgaccaataggtcactgttttctgctcaaagtgggtctg
accctctcagagtctctcctagc
gaattcatttgtagcagtagaattggtaatgagaagctgacccccgatgc
cctttcagtatagaataaactgagtctctggtctttctagctgtaggctt
ttccccctctatggagaaagcctatgaaatctatagagattgaaaccatc
aaatccttaaaaaccttagcctgtatcagaaaaagaattcaaagagaaca
ctggtgttggacagcgtcagtactatgggattttctgttgtaataaaata
ttctcttcttgtgagattatctagttatttctatttttactgcatacaac
ttcaaaaacttgttctatgtcttaaacacttgattaaatatattattaaa
agaaatttagaaattacaaaaagtatgttaaacatataaagaaaaagtac
taaaatatataatagaatgtcactgcaagagttttacatattttaattat
agaaaataaacttgtgatatgttatatattttatttttaagtaatgctct
cattttatacactaaattgtaacattttagagattaaaataagctctgta
agtattttcctggcaatgaaatatttttaatatcaatatttattgactca
ataccctactcttagctgtctcaaaattatcataaatggaaatagagctg
agcttggtctcatcatatgtgctgagggacatttcttggattcttcataa
ttaatttttgtatgacagaccacaaggttaaagcatataaactttttttt
gtaaggcttttaatatatgttaaaattacccctgaatagtatattcctcc
atcacacccaaataatgtagggcttcttgtctcttcatctttttttgttt
tgttttgttttttggttttggtttattgttttgttgtttgttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48896889_48897970
seq2: B6Ng01-015B05.b_44_1116

seq1  GAATTCCTGCATCACAGTGACCTCTTATTTTTCAAATGCAAATTAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCATCACAGTGACCTCTTATTTTTCAAATGCAAATTAGGTTA  50

seq1  CTCCCTATTAGTGAAATTAAAATGGTGTTACCTGATTCAAAGCTCTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATTAGTGAAATTAAAATGGTGTTACCTGATTCAAAGCTCTTAAG  100

seq1  ATAAAAAAAAAAAAAAATGTTTCCAGGCAGTGGCGGCACATGCCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAAAAAAAAATGTTTCCAGGCAGTGGCGGCACATGCCTTTAAT  150

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTTTGTGTTTGAGGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTTTGTGTTTGAGGCCAGC  200

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACCCAGAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACCCAGAGAAACCC  250

seq1  TGTCTTGAAAAAAGAAAGATGGTTGAGTTAGCCACCTCAAAATCATCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAAAGAAAGATGGTTGAGTTAGCCACCTCAAAATCATCCAT  300

seq1  TGGACAAAACAAAGGATTAGCATTTTACACTGTGGCCCCATGGCCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAAACAAAGGATTAGCATTTTACACTGTGGCCCCATGGCCCCATA  350

seq1  GAATTTCTGTCTGTAAGATTGTCAAATAGGCTAAAGACTTCTACCTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTGTCTGTAAGATTGTCAAATAGGCTAAAGACTTCTACCTACCA  400

seq1  TCTGAAACAATGACCAACAACTATAAATTTGGCTCACGCATAAGGACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACAATGACCAACAACTATAAATTTGGCTCACGCATAAGGACCCT  450

seq1  CGGAGCAGATATTCATATCTTACCTAACATCCAATTGCTGTCAGAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCAGATATTCATATCTTACCTAACATCCAATTGCTGTCAGAAATTC  500

seq1  ATGCTGTTTCAGAAATGTTCCAGCCTTGAAGTCTGACTTCACCTAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTTCAGAAATGTTCCAGCCTTGAAGTCTGACTTCACCTAGTCTT  550

seq1  TTGAAGCCACCACACTGCTTTTTCCAGTGAATCCTCATTTACTACTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCACCACACTGCTTTTTCCAGTGAATCCTCATTTACTACTAAGA  600

seq1  TTTTCTTTTTCCAGTGTTAAGTCAGAGCTATTTAAAGACAGCAGAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTCCAGTGTTAAGTCAGAGCTATTTAAAGACAGCAGAGAATA  650

seq1  GGCCCCAATTCTCTTGCACCTGATGCAAAGCAGGTGTTTCTTAAATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAATTCTCTTGCACCTGATGCAAAGCAGGTGTTTCTTAAATATCT  700

seq1  GTT-AAAAGTGTTAGAGTTACAGTCATAAGGGGGCAGTGGTTTTGGTCCA  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGTGTTAGAGTTACAGTCATAAGGGGGCAGTGGTTTTGGTCCA  750

seq1  TGTACATATTAACAAGCATGCATTTCTGTTATAATGAAGTCTAATTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATTAACAAGCATGCATTTCTGTTATAATGAAGTCTAATTTTTA  800

seq1  AGACCTCTAACCTCACAGTTATAAAGCTACCTGCAGTTCCTATGAGGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTAACCTCACAGTTATAAAGCTACCTGCAGTTCCTATGAGGCCC  850

seq1  AGCTGGAACCTCACGAGTTATTAGGGGACTCCATGGTCTTCTATCTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAACCTCACGAGTTATTAGGGGACTCCATGGTCTTCTATCTTCTC  900

seq1  AGATATTCAGTGCTTGCTGAACACTACATTCTTTCTTGCTTCTAGGTCCT  949
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGATA-TCAGTGCTTGCTGAACACTACATTC-TTCTTGCTTCTAGGTCCT  948

seq1  TCCTCTTGTGCTTGGAATGATTGGAGCCTTTAAACGATTGACTGTAACTA  999
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TCCTCTTGTGCTTGGAATGA-TGGAGCC-TTAAACGATTGACTGTAACTA  996

seq1  TCCACCCTTTTCTTTCTGAACCAATAGGTCACTG-TTTCTGCTCAAAAGT  1048
      | |||||||||| ||||| ||||||||||||||| ||||||||| |||||
seq2  T-CACCCTTTTCCTTCTG-ACCAATAGGTCACTGTTTTCTGCTC-AAAGT  1043

seq1  GGGTCTGACCCTCTACAGAGGGTCTCTCCCTAGC  1082
      |||||||||||||| ||||  |||||| ||||||
seq2  GGGTCTGACCCTCT-CAGA--GTCTCT-CCTAGC  1073

seq1: chr19_49032741_49033636
seq2: B6Ng01-015B05.g_69_962 (reverse)

seq1  CAAACAAACAAACAAACAAATAAACCAAAAACCAAAAAACAAAACAAAAC  50
      | ||||||| ||||||  |||||||| |||||||||||||||||||||||
seq2  CGAACAAAC-AACAAAACAATAAACC-AAAACCAAAAAACAAAACAAAAC  48

seq1  AAAAAAAGATGAAGAGACAAGAAGCCCTACATTATTTGGGTGTGATGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATGAAGAGACAAGAAGCCCTACATTATTTGGGTGTGATGGAG  98

seq1  GAATATACTATTCAGGGGTAATTTTAACATATATTAAAAGCCTTACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTATTCAGGGGTAATTTTAACATATATTAAAAGCCTTACAAAA  148

seq1  AAAAGTTTATATGCTTTAACCTTGTGGTCTGTCATACAAAAATTAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTATATGCTTTAACCTTGTGGTCTGTCATACAAAAATTAATTAT  198

seq1  GAAGAATCCAAGAAATGTCCCTCAGCACATATGATGAGACCAAGCTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATCCAAGAAATGTCCCTCAGCACATATGATGAGACCAAGCTCAGC  248

seq1  TCTATTTCCATTTATGATAATTTTGAGACAGCTAAGAGTAGGGTATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCCATTTATGATAATTTTGAGACAGCTAAGAGTAGGGTATTGAG  298

seq1  TCAATAAATATTGATATTAAAAATATTTCATTGCCAGGAAAATACTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATATTGATATTAAAAATATTTCATTGCCAGGAAAATACTTACA  348

seq1  GAGCTTATTTTAATCTCTAAAATGTTACAATTTAGTGTATAAAATGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTATTTTAATCTCTAAAATGTTACAATTTAGTGTATAAAATGAGAG  398

seq1  CATTACTTAAAAATAAAATATATAACATATCACAAGTTTATTTTCTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTAAAAATAAAATATATAACATATCACAAGTTTATTTTCTATAA  448

seq1  TTAAAATATGTAAAACTCTTGCAGTGACATTCTATTATATATTTTAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATGTAAAACTCTTGCAGTGACATTCTATTATATATTTTAGTAC  498

seq1  TTTTTCTTTATATGTTTAACATACTTTTTGTAATTTCTAAATTTCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTATATGTTTAACATACTTTTTGTAATTTCTAAATTTCTTTTA  548

seq1  ATAATATATTTAATCAAGTGTTTAAGACATAGAACAAGTTTTTGAAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATTTAATCAAGTGTTTAAGACATAGAACAAGTTTTTGAAGTTG  598

seq1  TATGCAGTAAAAATAGAAATAACTAGATAATCTCACAAGAAGAGAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTAAAAATAGAAATAACTAGATAATCTCACAAGAAGAGAATATT  648

seq1  TTATTACAACAGAAAATCCCATAGTACTGACGCTGTCCAACACCAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAACAGAAAATCCCATAGTACTGACGCTGTCCAACACCAGTGTT  698

seq1  CTCTTTGAATTCTTTTTCTGATACAGGCTAAGGTTTTTAAGGATTTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGAATTCTTTTTCTGATACAGGCTAAGGTTTTTAAGGATTTGATG  748

seq1  GTTTCAATCTCTATAGATTTCATAGGCTTTCTCCATAGAGGGGGAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATCTCTATAGATTTCATAGGCTTTCTCCATAGAGGGGGAAAAGC  798

seq1  CTACAGCTAGAAAGACCAGAGACTCAGTTTATTCTATACTGAAAGGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCTAGAAAGACCAGAGACTCAGTTTATTCTATACTGAAAGGGCAT  848

seq1  CGGGGGTCAGCTTCTCATTACCAATTCTACTGCTACAAATGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGTCAGCTTCTCATTACCAATTCTACTGCTACAAATGAATTC  894