BAC Information

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BAC

Clone NameB6Ng01-015H15
Chromosome19 (Build37)
Map Location 37,738,812 - 37,901,412
singlet/doubletdoublet
Overlap geneExoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251
Upstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex
Downstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015H15.bB6Ng01-015H15.g
ACCDH849724DH849725
length1,050931
definitionDH849724|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H15, 5' end.DH849725|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,738,812 - 37,739,868)(37,900,481 - 37,901,412)
sequence
gaattcttgccatggagactgggtgtctgccaagattttactttgaaatt
tctgtcttctgtttctaatcttaaggcatcataacggacaattcttttgc
caccagtctattttattcttttatgaagaagtcacttttaaataacaatt
atttccactataattaaacaaatctccttttgtttgcatgatttttgtta
ccatattgtatatacaccctgcttgcttaaacttgcccgcataattcctt
cacaggaactctacttaggagtttcaaagtcttcgactgcttaaagtatt
aatgagatttgccaaagttgtagtatccgaacgctcgcctcgatgcagcg
gcaggacagtgagcttgtccacacagctcctctagcaggctttttattct
ttagacaattctaaattcatctgaagtgccagagacttaaaggaagatgt
atcgtggtctattcctgaatataacaagaccagacatctcagagagttta
ccttaaggtccagatatgagaaaagtatgctgccctttgggaacgcttaa
attatgaaggattagtctgaacctagatggctttaccgttctcttccctg
tgttccagtgctggaactgtaggtcatggctgatatttagatatggaggt
gacttgtgctcagaccttcagttagtaataacattttgaactcaggtttt
taaatgttattttaagaattaagtgtaaaggtgctttatggtatgagaaa
ttattcttccaaattaaagcatatttttttctctttctctgctgaagaca
gagccaagggctttgtacatactaggcatatgctttaccacgtagctatg
tctcaagcctagtttctcattttaaaataagtacacacccatagaagtgt
aagaccccaggacacttcacccagctttcccagtgatagctatagtatga
tcatcaagaccacggagtgtttaaaaatacaaaccaatcttcactctccc
cttccctacagctgtcgaagtactcggctgcttcttcaagcccttgttat

gaattcactatgcagctaacgttggccttgaactcctaattcttctgttt
ctatctccctagtgctgagactattggtgttcttcacctggcccagccag
cccgaaacagctctgtgcagtggatgtgtgactttaagtgcaatacgggc
catactttgggagccctatcgtagggtgtggctaccattttgaaccttaa
ctggagaatggcagagagtgtggggcccaagggccttactctcctccctt
ctctgaaggttttccgtctcgctggaccaacactggttgagagtcagacg
aagctggaaagattccgtgggcaaagccatccccggaaacacctgctgca
ccacctcacagttggcacatcaaggagaagccagacaagagacccgctca
ccgcgcccacggaaacactcccagctcctttccatctcagactgccaacg
tttccgcaggtggaggccatgtttccagatcagacgcaaggccacggggc
agatgcagggcaggcggcggcgcttcctctcaaaggaatgccaacccggc
agccagcctgctgcatcgcagactctacgtgtcactttagggattttgga
ctttattgcaagccagatgcagagtcatgggagccaggtataaaaggtgt
gaggggcacataatcaggggacactgggcaggcactagcgctagctgcag
gtcaagtggagggcacatctgcctttaggcgccgccttactatttcaaag
ctacagggtgtttctagactccaggaattctatctggaacctcagagttg
gcactgacaggaagctctcaaagacttccctatgacccttttatgcttcc
tggggagtggggagacaggtaaagggcacgcaaagtcagcgcgggtttat
tctcttcctggaaatagaaaatggaattcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_37738812_37739868
seq2: B6Ng01-015H15.b_46_1095

seq1  GAATTCTTGCCATGGAGACTGGGTGTCTGCCAAGATTTTACTTTGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCATGGAGACTGGGTGTCTGCCAAGATTTTACTTTGAAATT  50

seq1  TCTGTCTTCTGTTTCTAATCTTAAGGCATCATAACGGACAATTCTTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTCTGTTTCTAATCTTAAGGCATCATAACGGACAATTCTTTTGC  100

seq1  CACCAGTCTATTTTATTCTTTTATGAAGAAGTCACTTTTAAATAACAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTCTATTTTATTCTTTTATGAAGAAGTCACTTTTAAATAACAATT  150

seq1  ATTTCCACTATAATTAAACAAATCTCCTTTTGTTTGCATGATTTTTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCACTATAATTAAACAAATCTCCTTTTGTTTGCATGATTTTTGTTA  200

seq1  CCATATTGTATATACACCCTGCTTGCTTAAACTTGCCCGCATAATTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGTATATACACCCTGCTTGCTTAAACTTGCCCGCATAATTCCTT  250

seq1  CACAGGAACTCTACTTAGGAGTTTCAAAGTCTTCGACTGCTTAAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAACTCTACTTAGGAGTTTCAAAGTCTTCGACTGCTTAAAGTATT  300

seq1  AATGAGATTTGCCAAAGTTGTAGTATCCGAACGCTCGCCTCGATGCAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTTGCCAAAGTTGTAGTATCCGAACGCTCGCCTCGATGCAGCG  350

seq1  GCAGGACAGTGAGCTTGTCCACACAGCTCCTCTAGCAGGCTTTTTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAGTGAGCTTGTCCACACAGCTCCTCTAGCAGGCTTTTTATTCT  400

seq1  TTAGACAATTCTAAATTCATCTGAAGTGCCAGAGACTTAAAGGAAGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAATTCTAAATTCATCTGAAGTGCCAGAGACTTAAAGGAAGATGT  450

seq1  ATCGTGGTCTATTCCTGAATATAACAAGACCAGACATCTCAGAGAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGGTCTATTCCTGAATATAACAAGACCAGACATCTCAGAGAGTTTA  500

seq1  CCTTAAGGTCCAGATATGAGAAAAGTATGCTGCCCTTTGGGAACGCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGGTCCAGATATGAGAAAAGTATGCTGCCCTTTGGGAACGCTTAA  550

seq1  ATTATGAAGGATTAGTCTGAACCTAGATGGCTTTACCGTTCTCTTCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAGGATTAGTCTGAACCTAGATGGCTTTACCGTTCTCTTCCCTG  600

seq1  TGTTCCAGTGCTGGAACTGTAGGTCATGGCTGATATTTAGATATGGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGTGCTGGAACTGTAGGTCATGGCTGATATTTAGATATGGAGGT  650

seq1  GACTTGTGCTCAGACCTTCAGTTAGTAATAACATTTTGAACTCAGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTGCTCAGACCTTCAGTTAGTAATAACATTTTGAACTCAGGTTTT  700

seq1  TAAATGTTATTTTAAGAATTAAGTGT-AAGGTGCTTTATGGTATGAGAAA  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAATGTTATTTTAAGAATTAAGTGTAAAGGTGCTTTATGGTATGAGAAA  750

seq1  TTATTCTT-CAAAATAAAGCATATTTTTTTCTCTTTCTCTGCTGAAGACA  798
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCCAAATTAAAGCATATTTTTTTCTCTTTCTCTGCTGAAGACA  800

seq1  GAGCCAAGGGCTTTGTACATACTAGGCATATGCTTTACCACGTAGCTATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGGGCTTTGTACATACTAGGCATATGCTTTACCACGTAGCTATG  850

seq1  TCTCAAGCCTAGTTTCTCATTTTAAAATAAGTACACACCCATAAGAAGTG  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTCAAGCCTAGTTTCTCATTTTAAAATAAGTACACACCCAT-AGAAGTG  899

seq1  TAGGACCCCAGGACACTTCACCCAGCTTTCCCAGTGATAGCTATAGTATG  948
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCCCAGGACACTTCACCCAGCTTTCCCAGTGATAGCTATAGTATG  949

seq1  ATCATCAAGACCACGGAAGTGTTTAAAACATACCAAACCAATC-TCACTT  997
      |||||||||||||||| ||||||||||| ||| |||||||||| |||| |
seq2  ATCATCAAGACCACGG-AGTGTTTAAAA-ATA-CAAACCAATCTTCAC-T  995

seq1  CTCCCCTTCTCTACAGCCTGTCAGAGTAACTCGGCTGCTTCCTTCCAAGC  1047
      ||||||||| |||||| |||||  ||| |||||||||||||  | |||||
seq2  CTCCCCTTCCCTACAG-CTGTCGAAGT-ACTCGGCTGCTTC--TTCAAGC  1041

seq1  CCTTTGTTAT  1057
      || |||||||
seq2  CC-TTGTTAT  1050

seq1: chr19_37900481_37901412
seq2: B6Ng01-015H15.g_68_998 (reverse)

seq1  TTGAATTCCATTTTCTTATTTCCAGGAAGAGAATAACACCCCGCGCTGAC  50
      ||||||||||||||| |||||||||||||||||||  | |||||||||||
seq2  TTGAATTCCATTTTC-TATTTCCAGGAAGAGAATA--AACCCGCGCTGAC  47

seq1  CTTGCCGTGCCC-TTCCCTGTCTCCCCACTCCCCAGGAAGCATAAAAGGG  99
       ||| ||||||| || ||||||||||||||||||||||||||||||||||
seq2  TTTG-CGTGCCCTTTACCTGTCTCCCCACTCCCCAGGAAGCATAAAAGGG  96

seq1  TCATAGGGAAGTCTTTGAGAGCTTCCTGTCAGTGCCAACTCTGAGGTTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGGAAGTCTTTGAGAGCTTCCTGTCAGTGCCAACTCTGAGGTTCC  146

seq1  AGATAGAATTCCTGGAGTCTAGAAACACCCTGTAGCTTTGAAATAGTAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAATTCCTGGAGTCTAGAAACACCCTGTAGCTTTGAAATAGTAAG  196

seq1  GCGGCGCCT-AAGGCAGATGTGCCCTCCACTTGACCTGCAGCTAGCGCTA  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGCCTAAAGGCAGATGTGCCCTCCACTTGACCTGCAGCTAGCGCTA  246

seq1  GTGCCTGCCCAGTGTCCCCTGATTATGTGCCCCTCACACCTTTTATACCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCCAGTGTCCCCTGATTATGTGCCCCTCACACCTTTTATACCT  296

seq1  GGCTCCCATGACTCTGCATCTGGCTTGCAATAAAGTCC-AAATCCCTAAA  347
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCTCCCATGACTCTGCATCTGGCTTGCAATAAAGTCCAAAATCCCTAAA  346

seq1  GTGACACGTAGAGTCTGCGATGCAGCAGGCTGGCTGCCGGGTTGGCATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACGTAGAGTCTGCGATGCAGCAGGCTGGCTGCCGGGTTGGCATTC  396

seq1  CTTTGAGAGGAAGCGCCGCCGCCTGCCCTGCATCTGCCCCGTGGCCTTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGAGGAAGCGCCGCCGCCTGCCCTGCATCTGCCCCGTGGCCTTGC  446

seq1  GTCTGATCTGGAAACATGGCCTCCACCTGCGGAAACGTTGGCAGTCTGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATCTGGAAACATGGCCTCCACCTGCGGAAACGTTGGCAGTCTGAG  496

seq1  ATGGAAAGGAGCTGGGAGTGTTTCCGTGGGCGCGGTGAGCGGGTCTCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGAGCTGGGAGTGTTTCCGTGGGCGCGGTGAGCGGGTCTCTTG  546

seq1  TCTGGCTTCTCCTTGATGTGCCAACTGTGAGGTGGTGCAGCAGGTGTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCTCCTTGATGTGCCAACTGTGAGGTGGTGCAGCAGGTGTTTC  596

seq1  CGGGGATGGCTTTGCCCACGGAATCTTTCCAGCTTCGTCTGACTCTCAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATGGCTTTGCCCACGGAATCTTTCCAGCTTCGTCTGACTCTCAAC  646

seq1  CAGTGTTGGTCCAGCGAGACGGAAAACCTTCAGAGAAGGGAGGAGAGTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGGTCCAGCGAGACGGAAAACCTTCAGAGAAGGGAGGAGAGTAA  696

seq1  GGCCCTTGGGCCCCACACTCTCTGCCATTCTCCAGTTAAGGTTCAAAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGGGCCCCACACTCTCTGCCATTCTCCAGTTAAGGTTCAAAATG  746

seq1  GTAGCCACACCCTACGATAGGGCTCCCAAAGTATGGCCCGTATTGCACTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCACACCCTACGATAGGGCTCCCAAAGTATGGCCCGTATTGCACTT  796

seq1  AAAGTCACACATCCACTGCACAGAGCTGTTTCGGGCTGGCTGGGCCAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACACATCCACTGCACAGAGCTGTTTCGGGCTGGCTGGGCCAGGT  846

seq1  GAAGAACACCAATAGTCTCAGCACTAGGGAGATAGAAACAGAAGAATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACACCAATAGTCTCAGCACTAGGGAGATAGAAACAGAAGAATTAG  896

seq1  GAGTTCAAGGCCAACGTTAGCTGCATAGTGAATTC  932
      |||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGGCCAACGTTAGCTGCATAGTGAATTC  931