BAC Information

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BAC

Clone NameB6Ng01-018H03
Chromosome19 (Build37)
Map Location 58,860,369 - 58,982,057
singlet/doubletdoublet
Overlap gene1700019N19Rik, Hspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H03.bB6Ng01-018H03.g
ACCDH851846DH851847
length1711,080
definitionDH851846|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H03, 5' end.DH851847|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,981,887 - 58,982,057)(58,860,369 - 58,861,456)
sequence
gaattcacatcttgggcccaactaatagataatcacagaccagtccctga
gccacagtcaatgctgaggactgaggaggagggtgaagctagaggctgag
atgaaagaacaagcagtcaggggaaccatgcccaagaagggaagaggtga
aaatggcgggtgggggggggg
gaattcttattaaatcacctcattgcccaaagagggtgagggggctgatt
ttgatgcaagtacaacaggtgtctgtgctcccttgaggcttacatctcct
agggaggatgcagggctctagctctcggcaaaagcctttgctaaggatgg
tggctccccatacacattcctgctgcatgactggctggaccactgagcac
aaccacagggcctgggagcttgggggtcctcacttgggggtgtttgacct
ggaagagaaagattccatatgagctgcacacaggtgaccttgctgagcaa
aggggtcagaaggaaacactgcctccctagcttacctggcccagagaatt
ctggaaatgcgggtgagagaccttgcagctgcaagatttttgaagaaggg
ctaagaggctgggcagccctcacatcgtatgttctaaaataagcagaaag
catgacatcacatcttttaatatgaggtttagcatgcaggtcctgagcaa
gcacagtgcattcgttctaatctttataacccaccctaaggtttgtaaat
accatccctatttcacagatggtaaactgaggctgagtgcttccctatgc
actgctccggtgtccctgcccgctccctccctcagcatcctgagagcttg
cttagaggttctagcagggagcacaggagatcagtcctcttccacaaagc
agacaacttcaggaggagagaagagaccagaggaagaggacaccacccag
ccagccagatctcccaaatcaattccagcaataaatggggtgacagatgt
tacaaccagtcacccccattttttgttgtttgattaatttttttgagact
ggatctccctatgtagccttggctgtcctgaaactcactatgtagactaa
gccagcctttgcctctggatgctgaaactatgggtgtgcaccatcatgct
tggcttccctagcatcttagtcttagccagtgctgagacagccagttgtg
atgggacttctagctagcagagcattgcaagcacagctctggcagctcgc
ttgtattccctatccctctgcttgctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58981887_58982057
seq2: B6Ng01-018H03.b_41_211 (reverse)

seq1  CCCCCCCCCCACCCGCCATTTTCACCTCTTCCCTTCTTGGGCATGGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCACCCGCCATTTTCACCTCTTCCCTTCTTGGGCATGGTTCC  50

seq1  CCTGACTGCTTGTTCTTTCATCTCAGCCTCTAGCTTCACCCTCCTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGCTTGTTCTTTCATCTCAGCCTCTAGCTTCACCCTCCTCCTCA  100

seq1  GTCCTCAGCATTGACTGTGGCTCAGGGACTGGTCTGTGATTATCTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGCATTGACTGTGGCTCAGGGACTGGTCTGTGATTATCTATTAG  150

seq1  TTGGGCCCAAGATGTGAATTC  171
      |||||||||||||||||||||
seq2  TTGGGCCCAAGATGTGAATTC  171

seq1: chr19_58860369_58861456
seq2: B6Ng01-018H03.g_66_1145

seq1  GAATTCTTATTAAATCACCTCATTGCCCAAAGAGGGTGAGGGGGCTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTAAATCACCTCATTGCCCAAAGAGGGTGAGGGGGCTGATT  50

seq1  TTGATGCAAGTACAACAGGTGTCTGTGCTCCCTTGAGGCTTACATCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAAGTACAACAGGTGTCTGTGCTCCCTTGAGGCTTACATCTCCT  100

seq1  AGGGAGGATGCAGGGCTCTAGCTCTCGGCAAAAGCCTTTGCTAAGGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGATGCAGGGCTCTAGCTCTCGGCAAAAGCCTTTGCTAAGGATGG  150

seq1  TGGCTCCCCATACACATTCCTGCTGCATGACTGGCTGGACCACTGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCCATACACATTCCTGCTGCATGACTGGCTGGACCACTGAGCAC  200

seq1  AACCACAGGGCCTGGGAGCTTGGGGGTCCTCACTTGGGGGTGTTTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGGGCCTGGGAGCTTGGGGGTCCTCACTTGGGGGTGTTTGACCT  250

seq1  GGAAGAGAAAGATTCCATATGAGCTGCACACAGGTGACCTTGCTGAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAAGATTCCATATGAGCTGCACACAGGTGACCTTGCTGAGCAA  300

seq1  AGGGGTCAGAAGGAAACACTGCCTCCCTAGCTTACCTGGCCCAGAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCAGAAGGAAACACTGCCTCCCTAGCTTACCTGGCCCAGAGAATT  350

seq1  CTGGAAATGCGGGTGAGAGACCTTGCAGCTGCAAGATTTTTGAAGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGCGGGTGAGAGACCTTGCAGCTGCAAGATTTTTGAAGAAGGG  400

seq1  CTAAGAGGCTGGGCAGCCCTCACATCGTATGTTCTAAAATAAGCAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGCTGGGCAGCCCTCACATCGTATGTTCTAAAATAAGCAGAAAG  450

seq1  CATGACATCACATCTTTTAATATGAGGTTTAGCATGCAGGTCCTGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCACATCTTTTAATATGAGGTTTAGCATGCAGGTCCTGAGCAA  500

seq1  GCACAGTGCATTCGTTCTAATCTTTATAACCCACCCTAAGGTTTGTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGCATTCGTTCTAATCTTTATAACCCACCCTAAGGTTTGTAAAT  550

seq1  ACCATCCCTATTTCACAGATGGTAAACTGAGGCTGAGTGCTTCCCTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCTATTTCACAGATGGTAAACTGAGGCTGAGTGCTTCCCTATGC  600

seq1  ACTGCTCCGGTGTCCCTGCCCGCTCCCTCCCTCAGCATCCTGAGAGCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCGGTGTCCCTGCCCGCTCCCTCCCTCAGCATCCTGAGAGCTTG  650

seq1  CTTAGAGGTTCTAGCAGGGAGCACAGGAGATCAGTCCTCTTCCACAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGTTCTAGCAGGGAGCACAGGAGATCAGTCCTCTTCCACAAAGC  700

seq1  AGACAACTTCAGGAGGAGAGAAGAGACCAGAGGAAGAGGACACCACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTTCAGGAGGAGAGAAGAGACCAGAGGAAGAGGACACCACCCAG  750

seq1  CCAGCCAGATCTCCCAAATCAATTCCAGCAATAAATGGGGTGACAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGATCTCCCAAATCAATTCCAGCAATAAATGGGGTGACAGATGT  800

seq1  TACAACCAGTCACCCCCATTTTTTGTTGTTTGATTAATTTTTTTGAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCAGTCACCCCCATTTTTTGTTGTTTGATTAATTTTTTTGAGACT  850

seq1  GGATCTCCCTATGTAGCCTTGGCTGTCCTGAAACTCACTATGTAGACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCCTATGTAGCCTTGGCTGTCCTGAAACTCACTATGTAGACTAA  900

seq1  GCCAGCCTTTGCCTCTGGATTGCTGAAACTATGGGTGTGCACCATCATGC  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCAGCCTTTGCCTCTGGA-TGCTGAAACTATGGGTGTGCACCATCATGC  949

seq1  TTGGCTTCCCTTAGCATCTTAAGTCTTAGGCCAGTGCTGAGACAGGCAGT  1000
      |||||||||| ||||||||| ||||||| |||||||||||||||| ||||
seq2  TTGGCTTCCC-TAGCATCTT-AGTCTTA-GCCAGTGCTGAGACAGCCAGT  996

seq1  TGTGATGGGAC-TCTAGCTAGCAGGAGCATTGCAAGCACAGCTCTGGCAG  1049
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TGTGATGGGACTTCTAGCTAGCA-GAGCATTGCAAGCACAGCTCTGGCAG  1045

seq1  GCCTCGCCTGTATCCCCTATTCCCTCTGCTTTGCTAGAA  1088
        ||||| ||||| ||||| ||||||||| |||||||||
seq2  --CTCGCTTGTATTCCCTA-TCCCTCTGC-TTGCTAGAA  1080