BAC Information

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BAC

Clone NameB6Ng01-018J11
Chromosome19 (Build37)
Map Location 45,702,245 - 45,841,946
singlet/doubletdoublet
Overlap geneFbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik
Downstream geneKcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J11.bB6Ng01-018J11.g
ACCDH851945DH851946
length1,144195
definitionDH851945|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J11, 5' end.DH851946|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,702,245 - 45,703,399)(45,841,752 - 45,841,946)
sequence
gaattcaacttgagttctatccctgggacctacatggtgaaagggcagaa
ataattcctgaaggttgtcctctgccttctacatgtgcaaccaaggcaca
aaggcatgtgagcatgcacgcacgcgcgcgcgcgcgcacacacacacaca
cacacacacacacacacaaataaatgaaagaacgaatgcaagttttttaa
gctagagtctgcaggcatggtggcacgcatcttgaatctcagacctgggg
aggcacatgtagacagatctctgtgagctccaggccagctacagagtgag
aagctgtctcagaaacaaaataaacaaaaacagagtttaagccatcgttt
gtgaaattaaggaaaaagccatatcaaataactcgacagttaacactaaa
cagtcagccaacacggggcaaaagagtcatccagggcaaggaaaatatag
caaggaaactgaaggagatgtgaggagagcagaaaagagccaagaaaggc
cacacagagagagcgctgcacagagtgtggtacgtacatcacagtaacgc
aagtattagaaagtcacactcttactcatggtccaagttatggccaagac
cctcaacttggcttactgtcatctcaaatcaaattcctttctcaacttct
cttattgacaccatctgtaataggtgctatgtggtcttttctcttgagaa
gtaacctagcgttctccagaggatgtggctagagtagaagtctctaaggc
tggggtgcaggggacagcctgcccacacctccatgtactgagtgcacgga
caatctctagcccagagccccttcaccagcaagctgctcttgtcccctga
tgccagcacatttgtcactcacttctctctagtcccacacacaagcctgg
ctgacaggctttcagaaaggtggcatttgggagaaactgccaaggagaca
aagctggctggctccatttttccacccagaactccccatacactagcttc
cctctggtcactggttgtccctttcctctttcctaaaatgctggatgatt
gttctgaagttaacagtatagtttagccgaacctctgctctgtgaaattt
aataactctccgtcgtcaatatgctaaggaaatggggcctccat
cagtggcttcgagcaaacagcagtgttgtcagtgtcaactgcaaagggaa
agactcagaaaaagtaagtgctcgttgtcccgtcagtggctcctcatggt
gctgggaatggcgaagggttgttcacagtgtcttcaaaacatttggaagt
ggttgtttgtttgtttgttttttgtttagttgatgttgttgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45702245_45703399
seq2: B6Ng01-018J11.b_46_1189

seq1  GAATTCAACTTGAGTTCTATCCCTGGGACCTACATGGTGAAAGGGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTGAGTTCTATCCCTGGGACCTACATGGTGAAAGGGCAGAA  50

seq1  ATAATTCCTGAAGGTTGTCCTCTGCCTTCTACATGTGCAACCAAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCTGAAGGTTGTCCTCTGCCTTCTACATGTGCAACCAAGGCACA  100

seq1  AAGGCATGTGAGCATGCACGCACGCGCGCGCGCGCGCACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTGAGCATGCACGCACGCGCGCGCGCGCGCACACACACACACA  150

seq1  CACACACACACACACACAAATAAATGAAAGAACGAATGCAAGTTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAAATAAATGAAAGAACGAATGCAAGTTTTTTAA  200

seq1  GCTAGAGTCTGCAGGCATGGTGGCACGCATCTTGAATCTCAGACCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTCTGCAGGCATGGTGGCACGCATCTTGAATCTCAGACCTGGGG  250

seq1  AGGCACATGTAGACAGATCTCTGTGAGCTCCAGGCCAGCTACAGAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGTAGACAGATCTCTGTGAGCTCCAGGCCAGCTACAGAGTGAG  300

seq1  AAGCTGTCTCAGAAACAAAATAAACAAAAACAGAGTTTAAGCCATCGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTCAGAAACAAAATAAACAAAAACAGAGTTTAAGCCATCGTTT  350

seq1  GTGAAATTAAGGAAAAAGCCATATCAAATAACTCGACAGTTAACACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTAAGGAAAAAGCCATATCAAATAACTCGACAGTTAACACTAAA  400

seq1  CAGTCAGCCAACACGGGGCAAAAGAGTCATCCAGGGCAAGGAAAATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCAACACGGGGCAAAAGAGTCATCCAGGGCAAGGAAAATATAG  450

seq1  CAAGGAAACTGAAGGAGATGTGAGGAGAGCAGAAAAGAGCCAAGAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACTGAAGGAGATGTGAGGAGAGCAGAAAAGAGCCAAGAAAGGC  500

seq1  CACACAGAGAGAGCGCTGCACAGAGTGTGGTACGTACATCACAGTAACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGAGCGCTGCACAGAGTGTGGTACGTACATCACAGTAACGC  550

seq1  AAGTATTAGAAAGTCACACTCTTACTCATGGTCCAAGTTATGGCCAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAGAAAGTCACACTCTTACTCATGGTCCAAGTTATGGCCAAGAC  600

seq1  CCTCAACTTGGCTTACTGTCATCTCAAATCAAATTCCTTTCTCAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTTGGCTTACTGTCATCTCAAATCAAATTCCTTTCTCAACTTCT  650

seq1  CTTATTGACACCATCTGTAATAGGTGCTATGTGGTCTTTTCTCTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGACACCATCTGTAATAGGTGCTATGTGGTCTTTTCTCTTGAGAA  700

seq1  GTAACCTAGCGTTCTCCAGAGGATGTGGCTAGAGTAGAAGTCTCTAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTAGCGTTCTCCAGAGGATGTGGCTAGAGTAGAAGTCTCTAAGGC  750

seq1  TGGGGTGCAGGGGACAGCCTGCCCACACCTCCATGTACTGAGTGCACGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCAGGGGACAGCCTGCCCACACCTCCATGTACTGAGTGCACGGA  800

seq1  CAATCTCTAGCCCAGAGCCCCTTCACCAGCAAGCTGCTCTTGTCCCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTAGCCCAGAGCCCCTTCACCAGCAAGCTGCTCTTGTCCCCTGA  850

seq1  TGCCAGCACATTTGTCACTCACTTCTCTCTAGTCCCACACACAAGCCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCACATTTGTCACTCACTTCTCTCTAGTCCCACACACAAGCCTGG  900

seq1  CTGACAGGCTTTCAGAAAGGTGGCATTTGGGAGAAACTGCCAAGGAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGCTTTCAGAAAGGTGGCATTTGGGAGAAACTGCCAAGGAGACA  950

seq1  AAGCTGGCTGGCTCCATTTTTCCACCCAGAACTCCCCATACACTTAGCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGCTGGCTGGCTCCATTTTTCCACCCAGAACTCCCCATACAC-TAGCTT  999

seq1  CCCTCTGGTCACTGGTTGTCCCTTTCCTCTTTCCTAAGATGCTGGAATGA  1050
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CCCTCTGGTCACTGGTTGTCCCTTTCCTCTTTCCTAAAATGCTGG-ATGA  1048

seq1  TTTGTTCTGAAAAGTGACAGGTTTATAGGTTAGCCGACACCTCTGCTCTG  1100
       |||||||| ||  | ||||   ||||| |||||||| ||||||||||||
seq2  -TTGTTCTG-AAGTTAACAG---TATAGTTTAGCCGA-ACCTCTGCTCTG  1092

seq1  TGGAATTTTAATTAACTTCTCCCGTCGTCAATATGCTAAGG-AATGGGGT  1149
      || |||||  | |||| ||| |||||||||||||||||||| ||||||| 
seq2  TGAAATTT--AATAAC-TCT-CCGTCGTCAATATGCTAAGGAAATGGGGC  1138

seq1  CTCCAT  1155
      ||||||
seq2  CTCCAT  1144

seq1: chr19_45841752_45841946
seq2: B6Ng01-018J11.g_73_267 (reverse)

seq1  AACCCAACAACATCAACTAAACAAAAAACAAACAAACAAACAACCACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACAACATCAACTAAACAAAAAACAAACAAACAAACAACCACTTC  50

seq1  CAAATGTTTTGAAGACACTGTGAACAACCCTTCGCCATTCCCAGCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTTTGAAGACACTGTGAACAACCCTTCGCCATTCCCAGCACCAT  100

seq1  GAGGAGCCACTGACGGGACAACGAGCACTTACTTTTTCTGAGTCTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCACTGACGGGACAACGAGCACTTACTTTTTCTGAGTCTTTCCC  150

seq1  TTTGCAGTTGACACTGACAACACTGCTGTTTGCTCGAAGCCACTG  195
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTGACACTGACAACACTGCTGTTTGCTCGAAGCCACTG  195