BAC Information

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BAC

Clone NameB6Ng01-019A03
Chromosome19 (Build37)
Map Location 22,254,743 - 22,434,662
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A03.bB6Ng01-019A03.g
ACCDH852229DH852230
length895116
definitionDH852229|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A03, 5' end.DH852230|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,254,743 - 22,255,636)(22,434,547 - 22,434,662)
sequence
gaattcattgtcgtgttgctatgtctgtcacatttttggtctccatggaa
cttggtgatctgaatgtgctgtggtgtactgttgccaactgtttaacatc
caaagccatttggaatttgtttactccaagccattgtaccagaaccatgt
tagtaacagaattgctgtgtggagttggaaatgaaataatataaagagct
tccaggtatgcgcatgaacagaaatgtgcagcccggactttcagcatctg
caggtaagtctctccttgtgtggacctggtcagcttggtggaccattgag
ggaggattcagatttatattagaggttcaccactcttcctccaagtctct
tcatccttctctttgatactcaacccacaggtgaagttttaccaaaccct
gctgtagactctgagataggcgtgcagagttttctggagtcctcttctta
ttttatttctcactcaggtcagatactgctctgtgacttgagaataaaga
ttgttcttgttttctcagcatgcaatgaatttcacctctgtatgctgatc
caattctgtggatatgtgataagaagtgatcccatccctatttcacatct
gtatatcatcccttttggctgtctaagtgttgcagaaatcccaactgatt
taaaagtccattcacctttctcgctcccctacttctcccttactacaggc
tcctggactcagtcctgcccagctgcattcgcactgatcagttagaacca
gacatacagtttttcctagaaaataaacattagtatttatttcccctctt
gaaagttgcattgttccaagttaaattgtcctatcagataatcttctcta
gtagtgtttagttcccatttaacatgcattctgaaatgtgaatta
ctcattttcatgactttcttagggagtggccttttgtgcaagtttataat
cccatacagttataaggtataggacaaggcagtgaaaaacatccatgatg
ggggggtggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22254743_22255636
seq2: B6Ng01-019A03.b_33_927

seq1  GAATTCATTGTCGTGTTGCTATGTCTGTCACA-TGTTGGTCTCCATGGAA  49
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  GAATTCATTGTCGTGTTGCTATGTCTGTCACATTTTTGGTCTCCATGGAA  50

seq1  CTTGGTGATCTGAATGTGCTGTGGTGTACTGTTGCCAACTGTTTAACATC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGATCTGAATGTGCTGTGGTGTACTGTTGCCAACTGTTTAACATC  100

seq1  CAAAGCCATTTGGAATTTGTTTACTCCAAGCCATTGTACCAGAACCATGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATTTGGAATTTGTTTACTCCAAGCCATTGTACCAGAACCATGT  150

seq1  TAGTAACAGAATTGCTGTGTGGAGTTGGAAATGAAATAATATAAAGAGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAGAATTGCTGTGTGGAGTTGGAAATGAAATAATATAAAGAGCT  200

seq1  TCCAGGTATGCGCATGAACAGAAATGTGCAGCCCGGACTTTCAGCATCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTATGCGCATGAACAGAAATGTGCAGCCCGGACTTTCAGCATCTG  250

seq1  CAGGTAAGTCTCTCCTTGTGTGGACCTGGTCAGCTTGGTGGACCATTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGTCTCTCCTTGTGTGGACCTGGTCAGCTTGGTGGACCATTGAG  300

seq1  GGAGGATTCAGATTTATATTAGAGGTTCACCACTCTTCCTCCAAGTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCAGATTTATATTAGAGGTTCACCACTCTTCCTCCAAGTCTCT  350

seq1  TCATCCTTCTCTTTGATACTCAACCCACAGGTGAAGTTTTACCAAACCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTCTCTTTGATACTCAACCCACAGGTGAAGTTTTACCAAACCCT  400

seq1  GCTGTAGACTCTGAGATAGGCGTGCAGAGTTTTCTGGAGTCCTCTTCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGACTCTGAGATAGGCGTGCAGAGTTTTCTGGAGTCCTCTTCTTA  450

seq1  TTTTATTTCTCACTCAGGTCAGATACTGCTCTGTGACTTGAGAATAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTCACTCAGGTCAGATACTGCTCTGTGACTTGAGAATAAAGA  500

seq1  TTGTTCTTGTTTTCTCAGCATGCAATGAATTTCACCTCTGTATGCTGATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGTTTTCTCAGCATGCAATGAATTTCACCTCTGTATGCTGATC  550

seq1  CAATTCTGTGGATATGTGATAAGAAGTGATCCCATCCCTATTTCACATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTGGATATGTGATAAGAAGTGATCCCATCCCTATTTCACATCT  600

seq1  GTATATCATCCC-TTTGGCTGTCTAAGTGTTGCAGAAATCCCAACTGATT  648
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTATATCATCCCTTTTGGCTGTCTAAGTGTTGCAGAAATCCCAACTGATT  650

seq1  TAAAAGTCCATTCACCTTTCTCGCTCCCCTACTTCTCCCTTACTACAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCCATTCACCTTTCTCGCTCCCCTACTTCTCCCTTACTACAGGC  700

seq1  TCCTGGACTCAGTCCTGCCCAGCTGCA-TCGCACTGATCAGTTAGAACCA  747
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCTGGACTCAGTCCTGCCCAGCTGCATTCGCACTGATCAGTTAGAACCA  750

seq1  GACATACAGTTTTTCCTAGAAAATAAACATTAGGTTATTTATTTCCCCTC  797
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GACATACAGTTTTTCCTAGAAAATAAACATTAG--TATTTATTTCCCCTC  798

seq1  TTGAAAGTTGCATTGTTCCAGGTT-AATTGTCCTATCAGATAATCTTCTC  846
      |||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  TTGAAAGTTGCATTGTTCCAAGTTAAATTGTCCTATCAGATAATCTTCTC  848

seq1  TAGTAGTGTTTAGTTCCCATTAAACATGCATTCTGAAATGTGCAATTA  894
      ||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TAGTAGTGTTTAGTTCCCATTTAACATGCATTCTGAAATGTG-AATTA  895

seq1: chr19_22434547_22434662
seq2: B6Ng01-019A03.g_75_190 (reverse)

seq1  CCCCACTCCACCCCCCCATCATGGATGTTTTTCACTGCCTTGTCCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCACCCCCCCATCATGGATGTTTTTCACTGCCTTGTCCTATAC  50

seq1  CTTATAACTGTATGGGATTATAAACTTGCACAAAAGGCCACTCCCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACTGTATGGGATTATAAACTTGCACAAAAGGCCACTCCCTAAGA  100

seq1  AAGTCATGAAAATGAG  116
      ||||||||||||||||
seq2  AAGTCATGAAAATGAG  116