BAC Information

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BAC

Clone NameB6Ng01-019C06
Chromosome19 (Build37)
Map Location 23,974,222 - 24,081,829
singlet/doubletdoublet
Overlap geneApba1, Gm967
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1
Downstream gene1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019C06.bB6Ng01-019C06.g
ACCDH852321DH852322
length1,053617
definitionDH852321|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C06, 5' end.DH852322|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,974,222 - 23,975,282)(24,081,213 - 24,081,829)
sequence
gaattctctctggaaatgtgccataaggatcatatgtgtggcatcactgt
atggcatgttggctccttccggaagttagggctcactatttagggtgggg
tgggtcactggcacactgagttaatatacttgacctcagtgcttctcgct
caccttctctgctctgggttttccctttgctgtcttccaacaggcaaatc
cacaccatgccactcatcctgggccctcccttcagtttccctggttccca
gcttctgcattaggcagcaccccaccagccctttttatccaggactgctc
tagctacatcaaactagcctactagtcagtgggaacggagcatgcaccac
ctgctccaggtcacaattactttatattggcagcctgttccctcccagag
accaatgcacaaaataatttgaggcaggaggttgtttcaaccctgacatt
gctcagttagtcagaaaccagcctcctccttgctgaaagagaggcattct
caacactgtgggaagtaaaggcccaaggttagtacctgccctgatcaaca
cctgtaagctggtggaaaaaagcattgggcgatgccccggcttcacctgg
gtcttagatgtcttgatgctaccccctctctatcctgaattcagcatacg
gcccacaaggattctgatttttcttttaacggttgctaggagactgtcca
ccaaggtcagatgcacatgttaattaattaagactcattagcagcatctt
gccctgttgacctggctgctgtgttgtcaagcctccaaggacaagtaaaa
agaatcggaccactgccaagaattctatttctgtgcgggattcccgtgag
gtgctctgaaatgaggggttccctctgtggatctccgcctgctcatgagt
tctgggctgccacaatatttccaggattggatagcaagggatggagttga
aatggatccaagtcaggcagacagagtttagatgagatgtgttctgtcag
tgcctgagttgggtcattccttgcttgggaagtggaggtgtatcttggga
aga
gaattccatctaagtagatggaggagcagtaaaccccacggagcaggctt
gactaacactaggaaggaacagcaacccatttctctccagagtccggctt
gtacacactgttcccggtgacaccaggagcatggtgggcggtgagcagga
gacgtaatcccgagtcactcaggggagcagtgtcatgagcagccaagcca
aatgcattactgctcttgatgtcatattttcacaggcttctgtttcagac
catggctttgtgttggcttcttctctctggctagaggcaactcaaggaag
agagttttatccttagatctgtggtctgtcctgtcgcgtgtgttttacct
agagcattaggcagacatccgtatctgttcttttgcatgtctgttttggc
ccatcgttggagaggatacactgtcatgatagggaagtggtagcgggagc
atgaggtgggtggtcacatccagactgcagttaggggacagagggagatg
aatgtttgttctcaggccaccgtccctctgctctttaatctgtagtggac
cccagcctgtgtgttggtgatgtctactttcaggatagctcctcctcctc
ctcttcctccccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_23974222_23975282
seq2: B6Ng01-019C06.b_43_1095

seq1  GAATTCTCTCTGGAAATGTGCCATAAGGATCATATGTGTGGCATCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGGAAATGTGCCATAAGGATCATATGTGTGGCATCACTGT  50

seq1  ATGGCATGTTGGCTCCTTCCGGAAGTTAGGGCTCACTATTTAGGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGTTGGCTCCTTCCGGAAGTTAGGGCTCACTATTTAGGGTGGGG  100

seq1  TGGGTCACTGGCACACTGAGTTAATATACTTGACCTCAGTGCTTCTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACTGGCACACTGAGTTAATATACTTGACCTCAGTGCTTCTCGCT  150

seq1  CACCTTCTCTGCTCTGGGTTTTCCCTTTGCTGTCTTCCAACAGGCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTCTGCTCTGGGTTTTCCCTTTGCTGTCTTCCAACAGGCAAATC  200

seq1  CACACCATGCCACTCATCCTGGGCCCTCCCTTCAGTTTCCCTGGTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATGCCACTCATCCTGGGCCCTCCCTTCAGTTTCCCTGGTTCCCA  250

seq1  GCTTCTGCATTAGGCAGCACCCCACCAGCCCTTTTTATCCAGGACTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCATTAGGCAGCACCCCACCAGCCCTTTTTATCCAGGACTGCTC  300

seq1  TAGCTACATCAAACTAGCCTACTAGTCAGTGGGAACGGAGCATGCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACATCAAACTAGCCTACTAGTCAGTGGGAACGGAGCATGCACCAC  350

seq1  CTGCTCCAGGTCACAATTACTTTATATTGGCAGCCTGTTCCCTCCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGTCACAATTACTTTATATTGGCAGCCTGTTCCCTCCCAGAG  400

seq1  ACCAATGCACAAAATAATTTGAGGCAGGAGGTTGTTTCAACCCTGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCACAAAATAATTTGAGGCAGGAGGTTGTTTCAACCCTGACATT  450

seq1  GCTCAGTTAGTCAGAAACCAGCCTCCTCCTTGCTGAAAGAGAGGCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTAGTCAGAAACCAGCCTCCTCCTTGCTGAAAGAGAGGCATTCT  500

seq1  CAACACTGTGGGAAGTAAAGGCCCAAGGTTAGTACCTGCCCTGATCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTGGGAAGTAAAGGCCCAAGGTTAGTACCTGCCCTGATCAACA  550

seq1  CCTGTAAGCTGGTGGAAAAAAGCATTGGGCGATGCCCCGGCTTCACCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGCTGGTGGAAAAAAGCATTGGGCGATGCCCCGGCTTCACCTGG  600

seq1  GTCTTAGATGTCTTGATGCTACCCCCTCTCTATCCTGAATTCAGCATACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGATGTCTTGATGCTACCCCCTCTCTATCCTGAATTCAGCATACG  650

seq1  GCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGCTAGGAGACTGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAGGATTCTGATTTTTCTTTTAACGGTTGCTAGGAGACTGTCCA  700

seq1  CCAAGGTCAGATGCACATGTTAATTAATTAAGACTCATTAGCAGCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCAGATGCACATGTTAATTAATTAAGACTCATTAGCAGCATCTT  750

seq1  GCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCCAAGGACAAGTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTGACCTGGCTGCTGTGTTGTCAAGCCTCCAAGGACAAGTAAAA  800

seq1  AGAATCGGACCACTGCCAAGAATTCTATTTCTGTGCGGGATTCCCGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGACCACTGCCAAGAATTCTATTTCTGTGCGGGATTCCCGTGAG  850

seq1  GTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCCGCCTGCTCATGAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCTCTGAAATGAGGGGTTCCCTCTGTGGATCTCCGCCTGCTCATGA-G  899

seq1  TTCTGGCCTGCCACAATATTTCCAGGATTGGATAGCAAGGGATGGAGTTG  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTGCCACAATATTTCCAGGATTGGATAGCAAGGGATGGAGTTG  949

seq1  AAATGGGATCCAAAGTCAGGCAGACAGAGTTTAGGATGAAGATGTGTTCT  1000
      |||| |||||| ||||||||||||||||||||| |||| |||||||||||
seq2  AAAT-GGATCC-AAGTCAGGCAGACAGAGTTTA-GATG-AGATGTGTTCT  995

seq1  GTCAGTGCCTGAGTTGGGGTCAGTTCCTTGCTGGGGATGT-GAGGTGGTA  1049
      ||||||||||||||| |||||| ||||||||| |||| || ||||| |||
seq2  GTCAGTGCCTGAGTT-GGGTCA-TTCCTTGCTTGGGAAGTGGAGGT-GTA  1042

seq1  CTCTTGGGAAGA  1061
       |||||||||||
seq2  -TCTTGGGAAGA  1053

seq1: chr19_24081213_24081829
seq2: B6Ng01-019C06.g_67_683 (reverse)

seq1  GGGAGGGGGAGGAAGAGGAGGAGGAGGAGCTATCCTGAAAGTAGACATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGAGGAAGAGGAGGAGGAGGAGCTATCCTGAAAGTAGACATCA  50

seq1  CCAACACACAGGCTGGGGTCCACTACAGATTAAAGAGCAGAGGGACGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACACAGGCTGGGGTCCACTACAGATTAAAGAGCAGAGGGACGGTG  100

seq1  GCCTGAGAACAAACATTCATCTCCCTCTGTCCCCTAACTGCAGTCTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGAACAAACATTCATCTCCCTCTGTCCCCTAACTGCAGTCTGGAT  150

seq1  GTGACCACCCACCTCATGCTCCCGCTACCACTTCCCTATCATGACAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACCCACCTCATGCTCCCGCTACCACTTCCCTATCATGACAGTGT  200

seq1  ATCCTCTCCAACGATGGGCCAAAACAGACATGCAAAAGAACAGATACGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCCAACGATGGGCCAAAACAGACATGCAAAAGAACAGATACGGA  250

seq1  TGTCTGCCTAATGCTCTAGGTAAAACACACGCGACAGGACAGACCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTAATGCTCTAGGTAAAACACACGCGACAGGACAGACCACAGA  300

seq1  TCTAAGGATAAAACTCTCTTCCTTGAGTTGCCTCTAGCCAGAGAGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGATAAAACTCTCTTCCTTGAGTTGCCTCTAGCCAGAGAGAAGAA  350

seq1  GCCAACACAAAGCCATGGTCTGAAACAGAAGCCTGTGAAAATATGACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACACAAAGCCATGGTCTGAAACAGAAGCCTGTGAAAATATGACATC  400

seq1  AAGAGCAGTAATGCATTTGGCTTGGCTGCTCATGACACTGCTCCCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTAATGCATTTGGCTTGGCTGCTCATGACACTGCTCCCCTGAG  450

seq1  TGACTCGGGATTACGTCTCCTGCTCACCGCCCACCATGCTCCTGGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCGGGATTACGTCTCCTGCTCACCGCCCACCATGCTCCTGGTGTCA  500

seq1  CCGGGAACAGTGTGTACAAGCCGGACTCTGGAGAGAAATGGGTTGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAACAGTGTGTACAAGCCGGACTCTGGAGAGAAATGGGTTGCTGTT  550

seq1  CCTTCCTAGTGTTAGTCAAGCCTGCTCCGTGGGGTTTACTGCTCCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAGTGTTAGTCAAGCCTGCTCCGTGGGGTTTACTGCTCCTCCAT  600

seq1  CTACTTAGATGGAATTC  617
      |||||||||||||||||
seq2  CTACTTAGATGGAATTC  617