BAC Information

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BAC

Clone NameB6Ng01-019M09
Chromosome19 (Build37)
Map Location 19,842,217 - 19,843,219
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M09.bB6Ng01-019M09.g
ACCDH852764DH852765
length1,098995
definitionDH852764|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M09, 5' end.DH852765|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattgcatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttgatcgtct
ttttgtcttattaacggtgtcttttgccttagagaagctttgcaatttta
taaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttccaggctttccccact
ttcacttctataagtttcactgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcgattcaca
ttcttctacatgataaccaccagttgtgccagcaccaattgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaacaatcaagtg
accataggtgtgtgggttcctatctgggccttcaattctattccattggt
ctacttgtgtgttgctataccagtaccatgcagtttttatcacaatttct
cggtagtacagttttaagtcaggcatggtgatttcaccagaagttctttt
atcattgagaagagtttttgctatcctaggtttattgttattcaagatga
aattgcaaattgccctttctaattcgttgaagaatagagttggaattttg
atgggattgcatttgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcttgccaatacattagcatgggagatatttaagtcctc
tgagatcttctttaatttctttcttcagagacttgaagttcttatcatac
agtctttcacttccttagttggagtcatgccaaggtattttatattatat
tgtgacattgagaagggtgttgttttcctatattctttttctcacctgtt
tttcgttgtgttgagaaagccattgactgttgatttaattttataccgct
acttcccgagagcgggtttcaagttaggggttcccgggggaattttag
gaattcaaaatgaattttgttctcctttaacacggagaatctgaattaag
tcataaagagactcttaactaatttcaggaacttaaataaaactgaaatt
atttagatgtacaaacaaaaatatgaacacagaactgaagaaacaaaggc
aggactagaggttgaatgccagagtaaaatgtcaaagcaaaaggttttcc
atgaagaccacatatttaaaatattttaattttgaaagttctcatttttt
aggtagagatttacctgcaggaatatacattaggtagaggaagacagcag
tgtggggcagacacaattattcttttcacttgctaacagtttaaacacat
tttcatcccaaatatataatagaaatttggctatgctatctgcagaatgc
gtgtatcttggtctactgtgattgaagttaggaacacgttaatatttaac
aatatattaagatgcttatggcttatttcaatttaaatcattaatctaca
gggcatttatagcatgattaatataatggtgtatactcaacgaatcaaat
gaaatggtgtaccttggcctgttatgagtgatgttttgggaagcaagcaa
agagtatatttgttagaattgcaagtgagagaaatccagaaatgatactt
agcagtcctacttaaccaaaatgtccagggaaaggttagtccaggatttc
aaatagtataagaaagacttgagattttactttcagtgaaatctacttaa
acacttcagattatatgttatgatttgtttctttaacttacatatcctgg
tttctggtaggtcccagtttctgttttcgtataatccaaaattatacaaa
agaccagcatttatttctgtagcagttccagaaaatgtttgtttcaagca
tttgttattttagtaatagacagaggtattatttagtatgtgagttatgc
aaactatacagacatgcacccttcacatctacattacaaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19842217_19843219
seq2: B6Ng01-019M09.g_68_1062

seq1  GAATTCAAAATGAATTTTGTTCTCCTTTAACACGGAGAATCTGAATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGAATTTTGTTCTCCTTTAACACGGAGAATCTGAATTAAG  50

seq1  TCATAAAGAGACTCTTAACTAATTTCAGGAACTTAAATAAAACTGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAGACTCTTAACTAATTTCAGGAACTTAAATAAAACTGAAATT  100

seq1  ATTTAGATGTACAAACAAAAATATGAACACAGAACTGAAGAAACAAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATGTACAAACAAAAATATGAACACAGAACTGAAGAAACAAAGGC  150

seq1  AGGACTAGAGGTTGAATGCCAGAGTAAAATGTCAAAGCAAAAGGTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGAGGTTGAATGCCAGAGTAAAATGTCAAAGCAAAAGGTTTTCC  200

seq1  ATGAAGACCACATATTTAAAATATTTTAATTTTGAAAGTTCTCATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGACCACATATTTAAAATATTTTAATTTTGAAAGTTCTCATTTTTT  250

seq1  AGGTAGAGATTTACCTGCAGGAATATACATTAGGTAGAGGAAGACAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGATTTACCTGCAGGAATATACATTAGGTAGAGGAAGACAGCAG  300

seq1  TGTGGGGCAGACACAATTATTCTTTTCACTTGCTAACAGTTTAAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCAGACACAATTATTCTTTTCACTTGCTAACAGTTTAAACACAT  350

seq1  TTTCATCCCAAATATATAATAGAAATTTGGCTATGCTATCTGCAGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCCAAATATATAATAGAAATTTGGCTATGCTATCTGCAGAATGC  400

seq1  GTGTATCTTGGTCTACTGTGATTGAAGTTAGGAACACGTTAATATTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTTGGTCTACTGTGATTGAAGTTAGGAACACGTTAATATTTAAC  450

seq1  AATATATTAAGATGCTTATGGCTTATTTCAATTTAAATCATTAATCTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAAGATGCTTATGGCTTATTTCAATTTAAATCATTAATCTACA  500

seq1  GGGCATTTATAGCATGATTAATATAATGGTGTATACTCAACGAATCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTATAGCATGATTAATATAATGGTGTATACTCAACGAATCAAAT  550

seq1  GAAATGGTGTACCTTGGCCTGTTATGAGTGATGTTTTGGGAAGCAAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTGTACCTTGGCCTGTTATGAGTGATGTTTTGGGAAGCAAGCAA  600

seq1  AGAGTATATTTGTTAGAATTGCAAGTGAGAGAAATCCAGAAATGATACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATATTTGTTAGAATTGCAAGTGAGAGAAATCCAGAAATGATACTT  650

seq1  AGCAGTCCTACTTAACCAAAATGTCCAGGGAAAGGTTAGTCCAGGATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCTACTTAACCAAAATGTCCAGGGAAAGGTTAGTCCAGGATTTC  700

seq1  AAATAGTATAAGAAAGACTTGAGATTTTACTTTCAGTGAAATCTACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATAAGAAAGACTTGAGATTTTACTTTCAGTGAAATCTACTTAA  750

seq1  ACACTTCAGATTATATGTTATGATTTGTTTCTTTAACTTACATATCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGATTATATGTTATGATTTGTTTCTTTAACTTACATATCCTGG  800

seq1  TTTCTGGTAGGTCCCAGTTTCTGTTTTCGTATAATCCAAAATTATACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTAGGTCCCAGTTTCTGTTTTCGTATAATCCAAAATTATACAAA  850

seq1  AGACCAGCATTTATTTCTGTAGCAGTTCCAGAAAATGTTTGTTTTCAAGC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACCAGCATTTATTTCTGTAGCAGTTCCAGAAAATGTTTG-TTTCAAGC  899

seq1  ATGTGTTATTTTAGTAAATAGACAGAGGTATTATTTAGTATGTGAGTATA  950
      || |||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  ATTTGTTATTTTAGT-AATAGACAGAGGTATTATTTAGTATGTGAGT-TA  947

seq1  TGCAAACTTATACAGACATGCACACATTCACAATCATACATTAACAAATG  1000
      ||||||| ||||||||||||||| | ||||| ||| |||||| |||||||
seq2  TGCAAAC-TATACAGACATGCAC-CCTTCAC-ATC-TACATT-ACAAATG  992

seq1  TGT  1003
      |||
seq2  TGT  995