BAC Information

Click to search

BAC

Clone NameB6Ng01-021L18
Chromosome19 (Build37)
Map Location 59,153,934 - 59,316,341
singlet/doubletdoublet
Overlap geneLOC668626, Vax1, LOC668627, Kcnk18
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik
Downstream geneSlc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021L18.bB6Ng01-021L18.g
ACCDH854155DH854156
length1,0951,010
definitionDH854155|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L18, 5' end.DH854156|Mus musculus domesticus DNA, BAC clone: B6Ng01-021L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,315,247 - 59,316,341)(59,153,934 - 59,154,957)
sequence
gaattcagagggtcctgcctgcacaaaggctgagaggggggactcccctt
gctttcctataatcaacacgcatgcacacatgcatgtacacacacgtgta
tggctcctttttgcaaaccaagtgttacaggatagctgaacatataaaaa
cagagcaaagtgaaacagggatgggaaaggaaccccttcacacacaaaac
cacaaaagtctgcaacagtcttactgatacctttacaattactgtgatga
aacaatgttgccaaaagcaaggtgcacaggaaacaatttatttgtgttac
acttccacgtcatgatccatcactgaggaatgtcaaggtagaaactcaca
cagggcaggaacctggaggcaggaactgatgcacaggtcaggaggggtgc
tgcttactggcttgctcatcatagcttgctcagcctgcttccttatagaa
tccagcaccagcagcccagagatggcaccacccacaaagggctgggtcct
cctacatcagtcactaattaagaacatgacctgcaggtttgtctacagct
tgacttataggggtattctctcagttggggttccttcttttcagatgtct
gtagcttgtgccaagttgacgtaaaacctgctagcacaccagggaaacta
agacatggggacacagtcctgactgcaagccctcagttgccctagcatct
aatccctgttcaataaatccgtgttgactcagtgacatgctgatttactt
ttgcctagttctctatgctttcctacacatactttttgaagagaccaacc
tgggcctagacctcagaaaggctccttatggcctatgatttttaatatgt
agtacttaaaagggtttttttctgtgatctaattgcaaggcctcaagcaa
ggcagttaaaggaagatgaaaagaagccataatttgtatccaagatatag
atgttctttgttgtcctgcacctacatcagctttcgagttcttcattgac
tagaagtgtaggtatcatcacatggcactaccaaggtacttaaggctacc
ctaccttagaattgctctgcagctgcctggttgggtgtcgagtcc
gaattcactctttagaccaggctggcctcagaaatctgcctgccaccggg
catggtggtgcacgcctttaatcccggcacttggaaggcagaggcaggcg
gacttctgagttcaaggccagccttgtctacaaagtgagttccaggacag
ccagggctatacagagaaaccctgtctcaacaaaaacaaacaaacaaaca
aacaaacaaacaaacagaaaaacccaaaccagcaatttctagaggaaaaa
gacttaaataaataactattaaaacaatgtttcatatacaattgttttta
atttttcaaatgtacatataaaaatgttctactttttactagaaaaaccg
tcatatatgcttaatctgtttcagtttaatatatattccacatcattcca
gcatatcaatgaataattagcaattcttacgttcttagttgcgttgttac
taatatatttgtatttgtaaataatgcagtctgaatatatggactacatc
taggtacatcacagttcaaatgctaaaacaaaacatgacattcatgtctt
caatgtaacggaagagagctgaggatactgctgcctcggaggcacctgct
tggcaggagtgcatcctgatttgctctccagtactcctccttcctctccc
ctccagttaacaaaagcagctgcagaagaagacgccctgcatatgcttgc
aacagcaccaggaaatgaagagctttggtgtaaatcgagcgaaatttctg
aagatctggatgctataaagtgcaatgcattgatgaaagcaaagatttaa
ataaatagaactagaacactccaaaatgtctatttcccaaaatttgttct
tgtagatttcacacagtcacagctgaaatccccttgagtccataaagatc
gatcgctaattccaaaattacactaaagtccaaagagctagaagtcagat
attctgaaaaaaaaaagacaacattctcaaacctactgtatctatgaacc
aagccatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_59315247_59316341
seq2: B6Ng01-021L18.b_43_1137 (reverse)

seq1  GGACTCGGACACCCAACCAGGCAGGCTGCAG-GCATATCTAGGGTAGGGT  49
      |||||| |||||||||||||||| ||||||| |||  |||| ||||||||
seq2  GGACTC-GACACCCAACCAGGCA-GCTGCAGAGCAATTCTAAGGTAGGGT  48

seq1  AGCC-TGAGTACCTTGGTTGTTGCCATGGTGATGGATAC--TCACCTCTA  96
      |||| | ||||||||||| | |||||| ||||| |||||   ||| ||||
seq2  AGCCTTAAGTACCTTGGTAG-TGCCAT-GTGAT-GATACCTACACTTCTA  95

seq1  GTCAATG-AGAACTCGGAAGCTGATGTGGGTGCAGGACAACAAAGAACAT  145
      ||||||| |||||||| |||||||||| ||||||||||||||||||||||
seq2  GTCAATGAAGAACTCGAAAGCTGATGTAGGTGCAGGACAACAAAGAACAT  145

seq1  CTCTATCTTGGATACAAATTATGGCTTCTTTTCATCTTCCTTTAACTGCC  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCTTGGATACAAATTATGGCTTCTTTTCATCTTCCTTTAACTGCC  195

seq1  TTGCTTTGAGCCTTGCAATTTAGATCACAGAATAAAACCCTTTTAAGTAC  245
      ||||||   ||||||||| ||||||||||||| |||||||||||||||||
seq2  TTGCTTGAGGCCTTGCAA-TTAGATCACAGAAAAAAACCCTTTTAAGTAC  244

seq1  TACATATTAAAAATCATAGGCCATTAAGGAGCCTTTCTGAGGTCTAGGCC  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACATATTAAAAATCATAGGCCA-TAAGGAGCCTTTCTGAGGTCTAGGCC  293

seq1  CAGGTTGGTCTCTTCAAAAAGTATGTGTAGGAAAGCATAGAGAACTAGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGTCTCTTCAAAAAGTATGTGTAGGAAAGCATAGAGAACTAGGC  343

seq1  -AAAGT-AATCAGCATGTCACTGAGTCAACACGGATTTATTGAACAGGGA  393
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAATCAGCATGTCACTGAGTCAACACGGATTTATTGAACAGGGA  393

seq1  TTAGATGCTAGGGCAACTGAGGGCTTGCAGTCAGGACTGTGTCCCCATGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGCTAGGGCAACTGAGGGCTTGCAGTCAGGACTGTGTCCCCATGT  443

seq1  CTTAGTTTCCCTGGTGTGCTAGCAGGTTTTACGTCAACTTGGCACAAGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTCCCTGGTGTGCTAGCAGGTTTTACGTCAACTTGGCACAAGCT  493

seq1  ACAGACATCTGAAAAGAAGGAACCCCAACTGAGAGAATACCCCTATAAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATCTGAAAAGAAGGAACCCCAACTGAGAGAATACCCCTATAAGT  543

seq1  CAAGCTGTAGACAAACCTGCAGGTCATGTTCTTAATTAGTGACTGATGTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGTAGACAAACCTGCAGGTCATGTTCTTAATTAGTGACTGATGTA  593

seq1  GGAGGACCCAGCCCTTTGTGGGTGGTGCCATCTCTGGGCTGCTGGTGCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCCAGCCCTTTGTGGGTGGTGCCATCTCTGGGCTGCTGGTGCTG  643

seq1  GATTCTATAAGGAAGCAGGCTGAGCAAGCTATGATGAGCAAGCCAGTAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATAAGGAAGCAGGCTGAGCAAGCTATGATGAGCAAGCCAGTAAG  693

seq1  CAGCACCCCTCCTGACCTGTGCATCAGTTCCTGCCTCCAGGTTCCTGCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCCTCCTGACCTGTGCATCAGTTCCTGCCTCCAGGTTCCTGCCC  743

seq1  TGTGTGAGTTTCTACCTTGACATTCCTCAGTGATGGATCATGACGTGGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGTTTCTACCTTGACATTCCTCAGTGATGGATCATGACGTGGAA  793

seq1  GTGTAACACAAATAAATTGTTTCCTGTGCACCTTGCTTTTGGCAACATTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACACAAATAAATTGTTTCCTGTGCACCTTGCTTTTGGCAACATTG  843

seq1  TTTCATCACAGTAATTGTAAAGGTATCAGTAAGACTGTTGCAGACTTTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCACAGTAATTGTAAAGGTATCAGTAAGACTGTTGCAGACTTTTG  893

seq1  TGGTTTTGTGTGTGAAGGGGTTCCTTTCCCATCCCTGTTTCACTTTGCTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTGTGTGAAGGGGTTCCTTTCCCATCCCTGTTTCACTTTGCTC  943

seq1  TGTTTTTATATGTTCAGCTATCCTGTAACACTTGGTTTGCAAAAAGGAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATATGTTCAGCTATCCTGTAACACTTGGTTTGCAAAAAGGAGC  993

seq1  CATACACGTGTGTGTACATGCATGTGTGCATGCGTGTTGATTATAGGAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACGTGTGTGTACATGCATGTGTGCATGCGTGTTGATTATAGGAAA  1043

seq1  GCAAGGGGAGTCCCCCCTCTCAGCCTTTGTGCAGGCAGGACCCTCTGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGAGTCCCCCCTCTCAGCCTTTGTGCAGGCAGGACCCTCTGAAT  1093

seq1  TC  1095
      ||
seq2  TC  1095

seq1: chr19_59153934_59154957
seq2: B6Ng01-021L18.g_70_1079

seq1  GAATTCACTCTTTAGACCAGGCTGGCCTCAGAAATCTGCCTGCCACCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTTAGACCAGGCTGGCCTCAGAAATCTGCCTGCCACCGGG  50

seq1  CATGGTGGTGCACGCCTTTAATCCCGGCACTTGGAAGGCAGAGGCAGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGTGCACGCCTTTAATCCCGGCACTTGGAAGGCAGAGGCAGGCG  100

seq1  GACTTCTGAGTTCAAGGCCAGCCTTGTCTACAAAGTGAGTTCCAGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGAGTTCAAGGCCAGCCTTGTCTACAAAGTGAGTTCCAGGACAG  150

seq1  CCAGGGCTATACAGAGAAACCCTGTCTCAACAAAAACAAACAAACAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTATACAGAGAAACCCTGTCTCAACAAAAACAAACAAACAAACA  200

seq1  AACAAACAAACAAACAGAAAAACCCAAACCAGCAATTTCTAGAGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAGAAAAACCCAAACCAGCAATTTCTAGAGGAAAAA  250

seq1  GACTTAAATAAATAACTATTAAAACAATGTTTCATATACAATTGTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAATAAATAACTATTAAAACAATGTTTCATATACAATTGTTTTTA  300

seq1  ATTTTTCAAATGTACATATAAAAATGTTCTACTTTTTACTAGAAAAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAATGTACATATAAAAATGTTCTACTTTTTACTAGAAAAACCG  350

seq1  TCATATATGCTTAATCTGTTTCAGTTTAATATATATTCCACATCATTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGCTTAATCTGTTTCAGTTTAATATATATTCCACATCATTCCA  400

seq1  GCATATCAATGAATAATTAGCAATTCTTACGTTCTTAGTTGCGTTGTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCAATGAATAATTAGCAATTCTTACGTTCTTAGTTGCGTTGTTAC  450

seq1  TAATATATTTGTATTTGTAAATAATGCAGTCTGAATATATGGACTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATTTGTATTTGTAAATAATGCAGTCTGAATATATGGACTACATC  500

seq1  TAGGTACATCACAGTTCAAATGCTAAAACAAAACATGACATTCATGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACATCACAGTTCAAATGCTAAAACAAAACATGACATTCATGTCTT  550

seq1  CAATGTAACGGAAGAGAGCTGAGGATACTGCTGCCTCGGAGGCACCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAACGGAAGAGAGCTGAGGATACTGCTGCCTCGGAGGCACCTGCT  600

seq1  TGGCAGGAGTGCATCCTGATTTGCTCTCCAGTACTCCTCCTTCCTCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGTGCATCCTGATTTGCTCTCCAGTACTCCTCCTTCCTCTCCC  650

seq1  CTCCAGTTAACAAAAGCAGCTGCAGAAGAAGACGCCCTGCATATGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTAACAAAAGCAGCTGCAGAAGAAGACGCCCTGCATATGCTTGC  700

seq1  AACAGCACCAGGAAATGAAGAGCTTTGGTGTAAATCGAGCGAAATTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACCAGGAAATGAAGAGCTTTGGTGTAAATCGAGCGAAATTTCTG  750

seq1  AAGATCTGGATGCTATAAAGTGCAATGCATTGATGAAAGCAAAGATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTGGATGCTATAAAGTGCAATGCATTGATGAAAGCAAAGATTTAA  800

seq1  ATAAATAGAACTAGAACACTCCAAAATGTCTA-TTCCCAAAATTTGTTC-  848
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ATAAATAGAACTAGAACACTCCAAAATGTCTATTTCCCAAAATTTGTTCT  850

seq1  TGTAGATTTCACACAGTCACAGCCTGAAATCCCCTTGAGTCCATAAAGAT  898
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTAGATTTCACACAGTCACAG-CTGAAATCCCCTTGAGTCCATAAAGAT  899

seq1  CGATCAGCTAATTCCAAAATTAACACTAAAGTCCAAAAGAGCTAGAAAAG  948
      ||||| ||||||||||||||| |||||||||||| ||||||||||  |||
seq2  CGATC-GCTAATTCCAAAATT-ACACTAAAGTCC-AAAGAGCTAG--AAG  944

seq1  TCAAGATAATTCTGAAAAAAAAAAAGAACAACATTCTCAAAACTAACTGT  998
      || |||| ||||||||||||||||   |||||||||||||| || |||||
seq2  TC-AGAT-ATTCTGAAAAAAAAAA--GACAACATTCTCAAACCT-ACTGT  989

seq1  AAATCTATGGAAACCAAGGCCATGTA  1024
        |||||||  |||||| ||||||||
seq2  --ATCTATG--AACCAA-GCCATGTA  1010