BAC Information

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BAC

Clone NameB6Ng01-027I09
Chromosome19 (Build37)19 (Build37)
Map Location 9,237,956 - 9,238,4729,717,570 - 9,718,313
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1
Downstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I09.bB6Ng01-027I09.g
ACCDH858243DH858244
length517760
definitionDH858243|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I09, 5' end.DH858244|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,237,956 - 9,238,472)(9,717,570 - 9,718,313)
sequence
gaattcagtaattgaagaaccagtccttggaagagtcatgttgtcttgct
ttatcatagcttgcatgctatgatgcaacttgttcatctgttttgtttga
atgtctcttcagtttttatttagggaccatcacattgagaattgtccttt
acctgtgtgtctgcatatgtgtgcattttaaagtatatgtacatattttt
ggaggccaagagatcaatgttgggtatctttcttacatgatttccacttt
attttttgagacaggatcttccaatgaatgtggactgagtgtgatttatc
ttgtgtgcctggcccattttctagtgacacccccctccccccagtttcta
gtcaacctatcttttaggaattcttagtcactgggtatagaggtgcatgc
ccttaatcctagcacccaggatacagaggtaggtagatcttgagttcatg
gtcagtctggcctaaagagtgaattcctgaacagccaaggttacacagct
aaatcttgtctcaaaaa
gaattcaagaacttgaggcgttggtagtaatagcattgggaaaagggggc
attgagagtaagggcattagtatcacaccagaacaggaggagagaacaag
attagaatagaacagagagacctctcttgaggagaacttttgaagaaact
ttatagagaactgaagaacttagaaataaaggctaaaatcacttttcaaa
gtgtccatttttctaactgagacttcagctagaggactggaagttagagc
cacagaaatgagagctggagaagtagaacaaaggctacttcacttaattc
cctgctgttttatgatgaggtgctacactgtagtttctgtcctcacagaa
actcagagaggcaggtcagctactgtaacaaagtgacttagactaagata
ggtaaatgttttattattatataatgaccctaaatatcttgcaaaaccaa
gtcttgccccactgacactctttcccctcctctctttcaagacaaaccaa
gaagtgccagggctggcctcctgcaagttcccttcctccatccacccttt
atatctattttatttcccattctcagtgagattaaaacatctttccttag
gtcctccttgttacttctttaggtctgtggattgcaacatggtttttcct
ataatttatggctaatatcaacttaaataagtttgtacataccatgtatg
atttttctggtctgtgttacctcactcaggatgatattttttcacttcca
tttatttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9237956_9238472
seq2: B6Ng01-027I09.b_42_558

seq1  GAATTCAGTAATTGAAGAACCAGTCCTTGGAAGAGTCATGTTGTCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATTGAAGAACCAGTCCTTGGAAGAGTCATGTTGTCTTGCT  50

seq1  TTATCATAGCTTGCATGCTATGATGCAACTTGTTCATCTGTTTTGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAGCTTGCATGCTATGATGCAACTTGTTCATCTGTTTTGTTTGA  100

seq1  ATGTCTCTTCAGTTTTTATTTAGGGACCATCACATTGAGAATTGTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTTCAGTTTTTATTTAGGGACCATCACATTGAGAATTGTCCTTT  150

seq1  ACCTGTGTGTCTGCATATGTGTGCATTTTAAAGTATATGTACATATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTGTCTGCATATGTGTGCATTTTAAAGTATATGTACATATTTTT  200

seq1  GGAGGCCAAGAGATCAATGTTGGGTATCTTTCTTACATGATTTCCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAAGAGATCAATGTTGGGTATCTTTCTTACATGATTTCCACTTT  250

seq1  ATTTTTTGAGACAGGATCTTCCAATGAATGTGGACTGAGTGTGATTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGAGACAGGATCTTCCAATGAATGTGGACTGAGTGTGATTTATC  300

seq1  TTGTGTGCCTGGCCCATTTTCTAGTGACACCCCCCTCCCCCCAGTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCCTGGCCCATTTTCTAGTGACACCCCCCTCCCCCCAGTTTCTA  350

seq1  GTCAACCTATCTTTTAGGAATTCTTAGTCACTGGGTATAGAGGTGCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCTATCTTTTAGGAATTCTTAGTCACTGGGTATAGAGGTGCATGC  400

seq1  CCTTAATCCTAGCACCCAGGATACAGAGGTAGGTAGATCTTGAGTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCCTAGCACCCAGGATACAGAGGTAGGTAGATCTTGAGTTCATG  450

seq1  GTCAGTCTGGCCTAAAGAGTGAATTCCTGAACAGCCAAGGTTACACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGGCCTAAAGAGTGAATTCCTGAACAGCCAAGGTTACACAGCT  500

seq1  AAATCTTGTCTCAAAAA  517
      |||||||||||||||||
seq2  AAATCTTGTCTCAAAAA  517

seq1: chr19_9717570_9718313
seq2: B6Ng01-027I09.g_70_815

seq1  GAATTCAAGAACTTGAGGCGTTGGTAGTAATAGCATTGGGAAAAGGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAACTTGAGGCGTTGGTAGTAATAGCATTGGGAAAAGGGGGC  50

seq1  ATTGAGAGTAAGGGCATTAGTATCACACCAGAACAGGAGGAGAGAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGTAAGGGCATTAGTATCACACCAGAACAGGAGGAGAGAACAAG  100

seq1  ATTAGAAGAGAACAGAGAGACCTCTCTTGAGGAGAACTTTTGAAGAAACT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAGAACAGAGAGACCTCTCTTGAGGAGAACTTTTGAAGAAACT  150

seq1  TTATAGAGAACTGAAGAACTTAGAAATGAAGGCTAAAATCACTTTTCAAA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTATAGAGAACTGAAGAACTTAGAAATAAAGGCTAAAATCACTTTTCAAA  200

seq1  GTGTCCATTTTTTCTAACTGAGACTTCAGCTAGAGGACTGGAAGTTAGAG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCA-TTTTTCTAACTGAGACTTCAGCTAGAGGACTGGAAGTTAGAG  249

seq1  CCACAGAAATTAGAGCTGGAGAAGTAGAACAAAGGCTACTTCACTTAATT  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAATGAGAGCTGGAGAAGTAGAACAAAGGCTACTTCACTTAATT  299

seq1  CCCTGCTGTTTTATGATGAGGTGCTAAACTGTAGTTTCTGTCCTCACAGG  350
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  CCCTGCTGTTTTATGATGAGGTGCTACACTGTAGTTTCTGTCCTCACAGA  349

seq1  AACTCAGAGAGGCAGGTCAGCTACTGTAACAAAGTGACTTAGACTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGAGGCAGGTCAGCTACTGTAACAAAGTGACTTAGACTAAGAT  399

seq1  AGGTAAATGTTTTATTATTATATAATGACCCTAAATATCTTGCAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGTTTTATTATTATATAATGACCCTAAATATCTTGCAAAACCA  449

seq1  AATCTTGCCCCACTGACACTCTTTCCCCTCCTCTCTTTCAAGACAAACCA  500
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGCCCCACTGACACTCTTTCCCCTCCTCTCTTTCAAGACAAACCA  499

seq1  AGAAGTGCCAGGGCTGGCCTCCTGCAAGTTCCCTTCCTCCATCCACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCCAGGGCTGGCCTCCTGCAAGTTCCCTTCCTCCATCCACCCTT  549

seq1  TATATCTATTTTATTTCCCATTCTCAGTGAGATTAAAACATCTTTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATTTTATTTCCCATTCTCAGTGAGATTAAAACATCTTTCCTTA  599

seq1  GGTCCTCCTTGTTACTTCTTTAGGTCTGTGGATTGCAACATGG-TTTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTCCTCCTTGTTACTTCTTTAGGTCTGTGGATTGCAACATGGTTTTTCC  649

seq1  TATAATTTATGGCTAATATCAACTT--ATAAGTTTGTACATACCATGTAT  697
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  TATAATTTATGGCTAATATCAACTTAAATAAGTTTGTACATACCATGTAT  699

seq1  GATTTTCTTGGTCTGTGTTACGTCACTCAGGATGATATTTTTTCACT  744
      ||||||  ||||||||||||| |||||||||||||||||||||||||
seq2  GATTTTTCTGGTCTGTGTTACCTCACTCAGGATGATATTTTTTCACT  746