BAC Information

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BAC

Clone NameB6Ng01-027L01
Chromosome19 (Build37)
Map Location 17,694,817 - 17,844,158
singlet/doubletdoublet
Overlap genePcsk5
Upstream geneVps13a, Foxb2, A230083H22Rik, Gcnt1, Rfk
Downstream geneEef1a1-ps1, LOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L01.bB6Ng01-027L01.g
ACCDH858368DH858369
length972700
definitionDH858368|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L01, 5' end.DH858369|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,694,817 - 17,695,785)(17,843,459 - 17,844,158)
sequence
gaattctactttgacacctgataatgaattgagctgcctgaatttcacca
aaatatacaagtaagaaaatgcagggaaaaaacatcagtgggttgagaaa
agagtagaatttctgtctatggttaagacaactaatgagctcaggaaaca
gtgagagcttagctgtagtagatggtggtgggctttagtcacggaagcac
tctgaaggactcttgatcatgccagtgtttgatttccattgtatttcata
tttttacttattcctacagggatgatagagaggtaaggattgagccagac
taccaagagaacattggtaagagaacattctggtaaccagactgagagca
aaagcacagaggaatgagtgaacaccctttctggggaaagccgtaggcac
aacaataacataggatcccttaaaaaaaaaatcacatacttccataaata
catttggcctagatttccctgccctcgaaacccaagcctgctctttctca
aaagcaactggaaaaaaagctacaacagggaaggcaaatggctagccaac
ctaggaagggaagatggctcatgttgagcttgctggttgcctctagcagc
ctcagggactttcttcctgtgattgccatcagttatgtctcaacagtacc
catcaaaaggtagccacctgtgatcttaggactcatggaaatgaacttca
ccatctgggcagttctggaaaagcttttgtttcacactgcaaacgttttt
tcatttttgcttggctttgtaataagatacaaacacttagagtgtactgg
ctaagaccaggcattgtgttgttacctacacaatattgttgtgtaatagt
aagattccaagatgtaaggactgatcactttagcattttcttcccagata
caagctgggaattctaagttgtacatcatgcaagttcattggagggggca
taagcagagcctgaatcccagc
gaattcagccttgccaattactagctgtgggaacgtgggcaaaaaagcca
atgtttgtttgagtccagtttcctttcataatgatgtcatttacatgatg
ctaaccaaagtcctaggactctttatggggattaaagtactcaataaatt
gaagctaaattgttgctggcattgtatccattattgcttttgctttttta
ttatttaaaattaaagttagatgatcagagtaggctcagaggttagtgtt
tagggagactttactcagcacagccaattgggaatatctactagcatacc
attcgggaaaataacataatcttggctctttcagacagccgactttggca
aacccatgaaaatcacagctttcctctaaaattattctcaaatttctaat
tctagcaatttacagtgaaaaatctgaggagcctttgtgtttaggaagga
ggaaagatctagaggtctcatcccctgaatcattttgttgacagtgtcta
ccacatgcagcatcatgacattatgtttttgcttgtttgtttgttgtgtt
tgtttgtttgtttgtttgttttggttctagaccaacataaggaactatag
acttcatacctggcagatgctgggggtagtatatgaacatttgttgagtc
caattttagttttttattaaagaaggtttttggggttttgtggggggggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_17694817_17695785
seq2: B6Ng01-027L01.b_41_1012

seq1  GAATTCTACTTTGACACCTGATAATGAATTGAGCTGCCTGAATTTCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTGACACCTGATAATGAATTGAGCTGCCTGAATTTCACCA  50

seq1  AAATATACAAGTAAGAAAATGCAGGGAAAAAACATCAGTGGGTTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACAAGTAAGAAAATGCAGGGAAAAAACATCAGTGGGTTGAGAAA  100

seq1  AGAGTAGAATTTCTGTCTATGGTTAAGACAACTAATGAGCTCAGGAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAATTTCTGTCTATGGTTAAGACAACTAATGAGCTCAGGAAACA  150

seq1  GTGAGAGCTTAGCTGTAGTAGATGGTGGTGGGCTTTAGTCACGGAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCTTAGCTGTAGTAGATGGTGGTGGGCTTTAGTCACGGAAGCAC  200

seq1  TCTGAAGGACTCTTGATCATGCCAGTGTTTGATTTCCATTGTATTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGACTCTTGATCATGCCAGTGTTTGATTTCCATTGTATTTCATA  250

seq1  TTTTTACTTATTCCTACAGGGATGATAGAGAGGTAAGGATTGAGCCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTATTCCTACAGGGATGATAGAGAGGTAAGGATTGAGCCAGAC  300

seq1  TACCAAGAGAACATTGGTAAGAGAACATTCTGGTAACCAGACTGAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGAGAACATTGGTAAGAGAACATTCTGGTAACCAGACTGAGAGCA  350

seq1  AAAGCACAGAGGAATGAGTGAACACCCTTTCTGGGGAAAGCCGTAGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGAGGAATGAGTGAACACCCTTTCTGGGGAAAGCCGTAGGCAC  400

seq1  AACAATAACATAGGATCCCTTAAAAAAAAAATCACATACTTCCATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACATAGGATCCCTTAAAAAAAAAATCACATACTTCCATAAATA  450

seq1  CATTTGGCCTAGATTTCCCTGCCCTCGAAACCCAAGCCTGCTCTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCCTAGATTTCCCTGCCCTCGAAACCCAAGCCTGCTCTTTCTCA  500

seq1  AAAGCAACTGGAAAAAAAGCTACAACAGGGAAGGCAAATGGCTAGCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTGGAAAAAAAGCTACAACAGGGAAGGCAAATGGCTAGCCAAC  550

seq1  CTAGGAAGGGAAGATGGCTCATGTTGAGCTTGCTGGTTGCCTCTAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGGGAAGATGGCTCATGTTGAGCTTGCTGGTTGCCTCTAGCAGC  600

seq1  CTCAGGGAC-TTCTTCCTGTGATTGCCATCAGTTATGTCTCAACAGTACC  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACTTTCTTCCTGTGATTGCCATCAGTTATGTCTCAACAGTACC  650

seq1  CATCAAAAGGTAGCCACCTGTGATCTTAGGACTCATGGAAATGAACTTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGGTAGCCACCTGTGATCTTAGGACTCATGGAAATGAACTTCA  700

seq1  CCATCTGGGCAGTTCTGGAAAAGC-TTTGTTTCACACTGCAAACGTTTTT  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATCTGGGCAGTTCTGGAAAAGCTTTTGTTTCACACTGCAAACGTTTTT  750

seq1  TCATTTTTGCTTGGCTTTGTAATAAGATACAAACACTTAGAGTGTACTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTGCTTGGCTTTGTAATAAGATACAAACACTTAGAGTGTACTGG  800

seq1  CTAAGACCAGGCATTGTG-TGTTACCTACACAATATTGTTGTGTAATAGT  847
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTAAGACCAGGCATTGTGTTGTTACCTACACAATATTGTTGTGTAATAGT  850

seq1  AAGATT-CAAGATGTAGGGACTGATCACTTTAGCATTTTCTTCCCAGATA  896
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGATTCCAAGATGTAAGGACTGATCACTTTAGCATTTTCTTCCCAGATA  900

seq1  CAAAGCTGGGAA-TCTAAGTTGTACAGTCATGCAAGTCCA-TGGAGGGGC  944
      | |||||||||| ||||||||||||| |||||||||| || |||||||| 
seq2  C-AAGCTGGGAATTCTAAGTTGTACA-TCATGCAAGTTCATTGGAGGGGG  948

seq1  CATAGGCAGAGCCTGAATCCACAGC  969
      |||| ||||||||||||||| ||||
seq2  CATAAGCAGAGCCTGAATCC-CAGC  972

seq1: chr19_17843459_17844158
seq2: B6Ng01-027L01.g_67_766 (reverse)

seq1  AACCCCCCCACAAAACCCCAAAAACCTTCTTTAATAAAAAACTAAAATTG  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCACAAAACCCCAAAAACCTTCTTTAATAAAAAACTAAAATTG  50

seq1  GACTCAACAAATGTTCATATACTACCCCCAGCATCTGCCAGGTATGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACAAATGTTCATATACTACCCCCAGCATCTGCCAGGTATGAAGT  100

seq1  CTATAGTTCCTTATGTTGGTCTAGAACCAAAACAAACAAACAAACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTCCTTATGTTGGTCTAGAACCAAAACAAACAAACAAACAAACA  150

seq1  AACACAACAAACAAACAAGCAAAAACATAATGTCATGATGCTGCATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAACAAACAAACAAGCAAAAACATAATGTCATGATGCTGCATGTGG  200

seq1  TAGACACTGTCAACAAAATGATTCAGGGGATGAGACCTCTAGATCTTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTGTCAACAAAATGATTCAGGGGATGAGACCTCTAGATCTTTCC  250

seq1  TCCTTCCTAAACACAAAGGCTCCTCAGATTTTTCACTGTAAATTGCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTAAACACAAAGGCTCCTCAGATTTTTCACTGTAAATTGCTAGA  300

seq1  ATTAGAAATTTGAGAATAATTTTAGAGGAAAGCTGTGATTTTCATGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATTTGAGAATAATTTTAGAGGAAAGCTGTGATTTTCATGGGTT  350

seq1  TGCCAAAGTCGGCTGTCTGAAAGAGCCAAGATTATGTTATTTTCCCGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGTCGGCTGTCTGAAAGAGCCAAGATTATGTTATTTTCCCGAAT  400

seq1  GGTATGCTAGTAGATATTCCCAATTGGCTGTGCTGAGTAAAGTCTCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCTAGTAGATATTCCCAATTGGCTGTGCTGAGTAAAGTCTCCCTA  450

seq1  AACACTAACCTCTGAGCCTACTCTGATCATCTAACTTTAATTTTAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAACCTCTGAGCCTACTCTGATCATCTAACTTTAATTTTAAATAA  500

seq1  TAAAAAAGCAAAAGCAATAATGGATACAATGCCAGCAACAATTTAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCAAAAGCAATAATGGATACAATGCCAGCAACAATTTAGCTTC  550

seq1  AATTTATTGAGTACTTTAATCCCCATAAAGAGTCCTAGGACTTTGGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTGAGTACTTTAATCCCCATAAAGAGTCCTAGGACTTTGGTTAG  600

seq1  CATCATGTAAATGACATCATTATGAAAGGAAACTGGACTCAAACAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTAAATGACATCATTATGAAAGGAAACTGGACTCAAACAAACAT  650

seq1  TGGCTTTTTTGCCCACGTTCCCACAGCTAGTAATTGGCAAGGCTGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTTGCCCACGTTCCCACAGCTAGTAATTGGCAAGGCTGAATTC  700