BAC Information

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BAC

Clone NameB6Ng01-028E08
Chromosome12 (Build37)19 (Build37)
Map Location 86,083,956 - 86,084,02511,810,167 - 11,811,327
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePapln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a
Downstream geneNpc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E08.bB6Ng01-028E08.g
ACCDH858792DH858793
length5671,146
definitionDH858792|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E08, 5' end.DH858793|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,083,956 - 86,084,025)(11,810,167 - 11,811,327)
sequence
gaattcattgtttttaatagctgagtagtactccattatgtaaatgtacc
atattttctgtatccattcctctgttgaagggcatctgggttttttgcag
cctctgaaagaggtaacaaaatactcataggagcaaatacagagacaaag
tgtggaggaaaggactgaaggaaaggccatccagagactgccctacctgg
agattcatcccatacacagtcaccaatcccagacactattgtggctgcca
agaagtacatgctgacaggagcctgatatagctgtctcctgagaggctct
gccagagcctgatatatacagaggcagatgcttgcatccaaccattagac
tgagcaaggggtccccaatggaggagttatagaaaggaatgaaggagctg
aaggggtttgcaaccccataggaagaacaacaagctgggcagtggtggtg
caagcctttaatcccagcacttgggaggcagaagcaggcagatttctgag
ttcgaggccagcctggtttacgaaagtaagttccaggacagccagggcta
cacagagaaaccctgtc
gaattcattaatcccttaaggtggaaactagcttaatactaattacatat
aataaatgccttaaagtttggtaatattcagacatacccagatacactct
cattctcttcctgtgctttctctattccatctaggaagataggaccacgt
ggtgcagtgaaattggaatgcatgtcactgatattcacagagtcatggac
agaggtctataaagataagggggccacaactgtaatcatttgaatggtaa
tgctgaagtcacctggcagagaataaaaggcagagagaaacattcaaaat
aataaaaatgtcagagattgtatgcctacctagtctaccaaaggactctt
tctttatgcagaggtgacttgctagataaagcaaatgtcaccaatcaaga
ggcaggtctgctactacttaaagtagaaacaaaaacagagacacactgac
tctcttggatgctcattgggctcaacttgcacatgttgtgtaattctatt
actccaccacccttttcatccttttcttacataggcccctgacatccgtt
gctgtctatgtctctgtctgtctctcctttctctttcttccctcttcctg
tctccatctctgactctctgtctcctgtgtttctctctcatcctcctctt
tttcctgcttcttcattttgtcttggtatacctccagtaatgcttgccct
ttctctccattttgcttggcatttactgagaacatgttatatagctcaca
ctgcactagtcaatttaaatggattgtttaattcagttcttatgaaaacc
tgtagtgggcactatcacaatccccagcattttcattgaaaaagtgaagc
tttgacattcaacattgtactcatattccctatatctattagcttattca
gtaatgaccacagataaaggaagtttctcccttatacctcagtgcaaata
ctttatttgacagatgatttatgctacatttctcaaagaatactgccatg
gtgctttcaaacagattttttatgttctgctgagtttaaggtatgatgat
aataaaaagtcagcaaaggatgctcatcttttagtaatggtcatgagctc
gaatttatatatcataatagaagaactcttatgatagtctactata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86083956_86084025
seq2: B6Ng01-028E08.b_539_609 (reverse)

seq1  GACAGGGCTTCTCTGTGCAGCCCTGGCTGTTCTGGAACTGTCCCT-GTAG  49
      ||||||| ||||||||| |||||||||||| ||||||||  |  | ||| 
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTACTTTCGTAA  50

seq1  ACCAGGCTGGCCTCGAACTCA  70
      |||||||||||||||||||||
seq2  ACCAGGCTGGCCTCGAACTCA  71

seq1: chr19_11810167_11811327
seq2: B6Ng01-028E08.g_64_1209 (reverse)

seq1  TATAGGTAGACTATCATTAAAGGAGTATCTTCTAATTATTGGATATATAA  50
      |||| ||||||||||||   | |||| |||||| |||||  |||||||||
seq2  TATA-GTAGACTATCAT---AAGAGT-TCTTCT-ATTAT--GATATATAA  42

seq1  ATCTGAGCATCATGACCATTACCTAGAAGATGAGCATCCTGTTGCTGACT  100
      ||  |||| |||||||||||| ||| |||||||||||||| |||||||||
seq2  ATTCGAGC-TCATGACCATTA-CTAAAAGATGAGCATCCT-TTGCTGACT  89

seq1  TTTTATTATTCATTCATACTGTAAACTCAGCAGAACATAAAATATCTGTA  150
      |||||||| ||| ||||||  ||||||||||||||||||||| |||||| 
seq2  TTTTATTA-TCA-TCATACCTTAAACTCAGCAGAACATAAAAAATCTGTT  137

seq1  TGGAAGGCACATGGCAGTATTCTTTGAGAAATGTAGCATAAATCATCTGT  200
      || |||   |||||||||||||||||||||||||||||||||||||||| 
seq2  TGAAAGCACCATGGCAGTATTCTTTGAGAAATGTAGCATAAATCATCTG-  186

seq1  TCAAATAAAGTATTTGCACTGAGGTATAAGGGAGAAACTTCCTTTTATCT  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAAATAAAGTATTTGCACTGAGGTATAAGGGAGAAACTTCC-TTTATCT  235

seq1  GTGGTCATTACTGAATAAGCTAATAGATATAGGGAATATGAGTACAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATTACTGAATAAGCTAATAGATATAGGGAATATGAGTACAATGT  285

seq1  TGAATGTCAAAGCTTCACTTTTTCAATGAAAATGCTGGGGATTGTGATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAAAGCTTCACTTTTTCAATGAAAATGCTGGGGATTGTGATAG  335

seq1  TGCCCACTACAGGTTTTCATAAGAACTGAATTAAACAATCCATTTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTACAGGTTTTCATAAGAACTGAATTAAACAATCCATTTAAATT  385

seq1  GACTAGTGCAGTGTGAGCTATATAACATGTTCTCAGTAAATGCCAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGCAGTGTGAGCTATATAACATGTTCTCAGTAAATGCCAAGCAA  435

seq1  AATGGAGAGAAAGGGCAAGCATTACTGGAGGTATACCAAGACAAAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGAAAGGGCAAGCATTACTGGAGGTATACCAAGACAAAATGAA  485

seq1  GAAGCAGGAAAAAGAGGAGGATGAGAGAGAAACACAGGAGACAGAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGAAAAAGAGGAGGATGAGAGAGAAACACAGGAGACAGAGAGTC  535

seq1  AGAGATGGAGACAGGAAGAGGGAAGAAAGAGAAAGGAGAGACAGACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGAGACAGGAAGAGGGAAGAAAGAGAAAGGAGAGACAGACAGAG  585

seq1  ACATAGACAGCAACGGATGTCAGGGGCCTATGTAAGAAAAGGATGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGACAGCAACGGATGTCAGGGGCCTATGTAAGAAAAGGATGAAAAG  635

seq1  GGTGGTGGAGTAATAGAATTACACAACATGTGCAAGTTGAGCCCAATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGAGTAATAGAATTACACAACATGTGCAAGTTGAGCCCAATGAG  685

seq1  CATCCAAGAGAGTCAGTGTGTCTCTGTTTTTGTTTCTACTTTAAGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGAGAGTCAGTGTGTCTCTGTTTTTGTTTCTACTTTAAGTAGTA  735

seq1  GCAGACCTGCCTCTTGATTGGTGACATTTGCTTTATCTAGCAAGTCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCTGCCTCTTGATTGGTGACATTTGCTTTATCTAGCAAGTCACCT  785

seq1  CTGCATAAAGAAAGAGTCCTTTGGTAGACTAGGTAGGCATACAATCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAAGAAAGAGTCCTTTGGTAGACTAGGTAGGCATACAATCTCTG  835

seq1  ACATTTTTATTATTTTGAATGTTTCTCTCTGCCTTTTATTCTCTGCCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTATTATTTTGAATGTTTCTCTCTGCCTTTTATTCTCTGCCAGG  885

seq1  TGACTTCAGCATTACCATTCAAATGATTACAGTTGTGGCCCCCTTATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAGCATTACCATTCAAATGATTACAGTTGTGGCCCCCTTATCTT  935

seq1  TATAGACCTCTGTCCATGACTCTGTGAATATCAGTGACATGCATTCCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACCTCTGTCCATGACTCTGTGAATATCAGTGACATGCATTCCAAT  985

seq1  TTCACTGCACCACGTGGTCCTATCTTCCTAGATGGAATAGAGAAAGCACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCACCACGTGGTCCTATCTTCCTAGATGGAATAGAGAAAGCACA  1035

seq1  GGAAGAGAATGAGAGTGTATCTGGGTATGTCTGAATATTACCAAACTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAATGAGAGTGTATCTGGGTATGTCTGAATATTACCAAACTTTA  1085

seq1  AGGCATTTATTATATGTAATTAGTATTAAGCTAGTTTCCACCTTAAGGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTATTATATGTAATTAGTATTAAGCTAGTTTCCACCTTAAGGGA  1135

seq1  TTAATGAATTC  1161
      |||||||||||
seq2  TTAATGAATTC  1146