BAC Information

Click to search

BAC

Clone NameB6Ng01-029L12
Chromosome19 (Build37)
Map Location 54,153,729 - 54,335,454
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668545, LOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029L12.bB6Ng01-029L12.g
ACCDH859840DH859841
length1,0681,017
definitionDH859840|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L12, 5' end.DH859841|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,334,378 - 54,335,454)(54,153,729 - 54,154,748)
sequence
gaattcatctggtatctatagcccgaaatacctcctaacacatgcctaca
cacccagaagtgaagacagccaaccgcagcactgcaaccaaccctccgtt
cacatcctgaagattcatcaggccagagatgaggaggatcagtcaggaat
cttcttggaagaaactgggcttccttctctgtcaagttaaggaagtggca
ggctgttttcagaggtcccagcaactctggtgctccatttcttcagaaag
tccctgtgaggaattaggccagacccatcccagtaacacatttccttcta
aagcaagcatacttccaaactcaatatctggcgtcttcaaggggagtaga
atattttttagggcttcctctatcaagagaatcacctaatggtgggatta
gaaacatcttctaattaaacagctctcaagcaaattcatttgcatattat
ttgacttgcttaataagaatggattaaattacctctcttatggggctgtg
gcaaatctttttaatcagagcaccagaggacattctaagtgctctggcca
cataaggtgggggccaaacatgacccagacacagttagaaaaagaggtga
atgtgagctcaaagactggggaaataagcttagagataattgcataataa
tctctctattctcattcacgccagtcaccttgacagggggattacatgga
ttaagtctgggtttgttccagaattcattttcaaaattatagaaatcact
gtggtgagcaaagccatttaacctgaaccacgagtttagacgtggtaact
gacaatcatgtagttgtttggagagtctagccgaacctcagtgaacattt
aacgagctcgtaccgtgctgtgtgcttctggagctgatctccgtcactct
catcgcaatccagcacagacaccttctctagtcgctacagtaacatcaga
ccagtgtggctcagcagtctgactctagagtcaggatctgcttcttcaga
tttcaattccgtcaactggggaagctagttagcatctttatccttgtttc
ttgttgggaaagtgagtg
gaattcaattcagacagacctggtgatgagtgtattcctcccagatcgca
gcttgtttctgtgtgatgagcgttactccatgccaggcttgggggtacgg
gagtctttgtgaagtaagagtacccactcttatttagagccaaaggtcaa
gttcaagtgtttcaagagctctgatccttaggaaattcccgtgagggaca
ttgcttactttttttcccttctctttctcattcctgtttttcagatgaag
gaagggcctgagaggttcagctgcctgtctcccaaccacatggttagtga
accactgcatcaagacccaaggaaactctctctatttggcactacatctg
tccttgctctgggagactcgctgtttctgcatagagaacagaggggcctc
cccaacttgaaggggtaggagaacaaggagggctgttccttcctgtgctg
aggcaaaaggtctctgcaggtactttaaatcgcccactccagtgtctggg
tccaggcttcttagccaagcctgcttctgcagtccttcttctttgccagg
ttttaaggaccaggggagataagaaccaggacacctcatggaggcagaat
aactccactttcagcactgggcacctccttttccaggtggagaggagaaa
tggagaccttacaggagggtttgtcatatcctgatgggacttcttctggc
tgccagcagtgtttggggaacaatgcttcactgtgttctttttcttgggg
agtctatttccatatttctatatattctgtttcaactccagggagagtag
ttagtgcagactgtgggggcaaattttatatcactttgacacagtggaca
tttgggaagtggccacctctaaatgagaaaaatgtccaagccacattggc
atttgggacagcctgtgggcatttttttttgctttgtttttgtttttgat
tgatgatagatgcggcgtggggtcatcctcatggtgctcgtataaccctt
ggctaggaactgaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54334378_54335454
seq2: B6Ng01-029L12.b_43_1110 (reverse)

seq1  CACTCACATTTCCCAAACAAGAAAACAAGGGATAAAGATGCTAACTAGCT  50
      ||||||| |||||| |||||| |||||| |||||||||||||||||||||
seq2  CACTCAC-TTTCCC-AACAAG-AAACAA-GGATAAAGATGCTAACTAGCT  46

seq1  TCCCCAGTGTGACGGAATTGGAAATCTGAAGAAGCAGGATCCTGGCTCTG  100
      |||||||| |||||||||| |||||||||||||||| ||||||| |||| 
seq2  TCCCCAGT-TGACGGAATT-GAAATCTGAAGAAGCA-GATCCTGACTCTA  93

seq1  GAGTTCAGACTGCTGAGCCACACTGGTCTGATGTTACTGTAGCGACTAGA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAG-TCAGACTGCTGAGCCACACTGGTCTGATGTTACTGTAGCGACTAGA  142

seq1  GAAGGTGTCTGTGCTGGATTGCGATGAGGGTGACGGAGATCAGCTCCAGA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  GAAGGTGTCTGTGCTGGATTGCGATGAGAGTGACGGAGATCAGCTCCAG-  191

seq1  AAGCACACAGCACGGTACGAGCTCGTTAAATGTTCACTGAGGTTCGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACAGCACGGTACGAGCTCGTTAAATGTTCACTGAGGTTCGGCTA  241

seq1  GACTCTCCAAACAACTACATGATTGTCAGTTACCACGTCTAAACTCGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCAAACAACTACATGATTGTCAGTTACCACGTCTAAACTCGTGG  291

seq1  TTCAGGTTAAATGGCTTTGCTCACCACAGTGATTTCTATAATTTTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTAAATGGCTTTGCTCACCACAGTGATTTCTATAATTTTGAAAA  341

seq1  TGAATTCTGGAACAAACCCAGACTTAATCCATGTAATCCCCCTGTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTGGAACAAACCCAGACTTAATCCATGTAATCCCCCTGTCAAGG  391

seq1  TGACTGGCGTGAATGAGAATAGAGAGATTATTATGCAATTATCTCTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCGTGAATGAGAATAGAGAGATTATTATGCAATTATCTCTAAGC  441

seq1  TTATTTCCCCAGTCTTTGAGCTCACATTCACCTCTTTTTCTAACTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCCAGTCTTTGAGCTCACATTCACCTCTTTTTCTAACTGTGTC  491

seq1  TGGGTCATGTTTGGCCCCCACCTTATGTGGCCAGAGCACTTAGAATGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATGTTTGGCCCCCACCTTATGTGGCCAGAGCACTTAGAATGTCC  541

seq1  TCTGGTGCTCTGATTAAAAAGATTTGCCACAGCCCCATAAGAGAGGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCTCTGATTAAAAAGATTTGCCACAGCCCCATAAGAGAGGTAAT  591

seq1  TTAATCCATTCTTATTAAGCAAGTCAAATAATATGCAAATGAATTTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCATTCTTATTAAGCAAGTCAAATAATATGCAAATGAATTTGCTT  641

seq1  GAGAGCTGTTTAATTAGAAGATGTTTCTAATCCCACCATTAGGTGATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTTTAATTAGAAGATGTTTCTAATCCCACCATTAGGTGATTCT  691

seq1  CTTGATAGAGGAAGCCCTAAAAAATATTCTACTCCCCTTGAAGACGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGAGGAAGCCCTAAAAAATATTCTACTCCCCTTGAAGACGCCAG  741

seq1  ATATTGAGTTTGGAAGTATGCTTGCTTTAGAAGGAAATGTGTTACTGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGTTTGGAAGTATGCTTGCTTTAGAAGGAAATGTGTTACTGGGA  791

seq1  TGGGTCTGGCCTAATTCCTCACAGGGACTTTCTGAAGAAATGGAGCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGGCCTAATTCCTCACAGGGACTTTCTGAAGAAATGGAGCACCA  841

seq1  GAGTTGCTGGGACCTCTGAAAACAGCCTGCCACTTCCTTAACTTGACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTGGGACCTCTGAAAACAGCCTGCCACTTCCTTAACTTGACAGA  891

seq1  GAAGGAAGCCCAGTTTCTTCCAAGAAGATTCCTGACTGATCCTCCTCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCCCAGTTTCTTCCAAGAAGATTCCTGACTGATCCTCCTCATC  941

seq1  TCTGGCCTGATGAATCTTCAGGATGTGAACGGAGGGTTGGTTGCAGTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTGATGAATCTTCAGGATGTGAACGGAGGGTTGGTTGCAGTGCT  991

seq1  GCGGTTGGCTGTCTTCACTTCTGGGTGTGTAGGCATGTGTTAGGAGGTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTGGCTGTCTTCACTTCTGGGTGTGTAGGCATGTGTTAGGAGGTAT  1041

seq1  TTCGGGCTATAGATACCAGATGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TTCGGGCTATAGATACCAGATGAATTC  1068

seq1: chr19_54153729_54154748
seq2: B6Ng01-029L12.g_67_1083

seq1  GAATTCAATTCAGACAGACCTGGTGATGAGTGTATTCCTCCCAGATCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAGACAGACCTGGTGATGAGTGTATTCCTCCCAGATCGCA  50

seq1  GCTTGTTTCTGTGTGATGAGCGTTACTCCATGCCAGGCTTGGGGGTACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTCTGTGTGATGAGCGTTACTCCATGCCAGGCTTGGGGGTACGG  100

seq1  GAGTCTTTGTGAAGTAAGAGTACCCACTCTTATTTAGAGCCAAAGGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTGTGAAGTAAGAGTACCCACTCTTATTTAGAGCCAAAGGTCAA  150

seq1  GTTCAAGTGTTTCAAGAGCTCTGATCCTTAGGAAATTCCCGTGAGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTGTTTCAAGAGCTCTGATCCTTAGGAAATTCCCGTGAGGGACA  200

seq1  TTGCTTACTTTTTTTCCCTTCTCTTTCTCATTCCTGTTTTTCAGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACTTTTTTTCCCTTCTCTTTCTCATTCCTGTTTTTCAGATGAAG  250

seq1  GAAGGGCCTGAGAGGTTCAGCTGCCTGTCTCCCAACCACATGGTTAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCTGAGAGGTTCAGCTGCCTGTCTCCCAACCACATGGTTAGTGA  300

seq1  ACCACTGCATCAAGACCCAAGGAAACTCTCTCTATTTGGCACTACATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCATCAAGACCCAAGGAAACTCTCTCTATTTGGCACTACATCTG  350

seq1  TCCTTGCTCTGGGAGACTCGCTGTTTCTGCATAGAGAACAGAGGGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTCTGGGAGACTCGCTGTTTCTGCATAGAGAACAGAGGGGCCTC  400

seq1  CCCAACTTGAAGGGGTAGGAGAACAAGGAGGGCTGTTCCTTCCTGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGAAGGGGTAGGAGAACAAGGAGGGCTGTTCCTTCCTGTGCTG  450

seq1  AGGCAAAAGGTCTCTGCAGGTACTTTAAATCGCCCACTCCAGTGTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGGTCTCTGCAGGTACTTTAAATCGCCCACTCCAGTGTCTGGG  500

seq1  TCCAGGCTTCTTAGCCAAGCCTGCTTCTGCAGTCCTTCTTCTTTGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTTCTTAGCCAAGCCTGCTTCTGCAGTCCTTCTTCTTTGCCAGG  550

seq1  TTTTAAGGACCAGGGGAGATAAGAACCAGGACACCTCATGGAGGCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGACCAGGGGAGATAAGAACCAGGACACCTCATGGAGGCAGAAT  600

seq1  AACTCCACTTTCAGCACTGGGCACCTCCTTTTCCAGGTGGAGAGGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACTTTCAGCACTGGGCACCTCCTTTTCCAGGTGGAGAGGAGAAA  650

seq1  TGGAGACCTTACAGGAGGGTTTGTCATATCCTGATGGGACTTCTTCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCTTACAGGAGGGTTTGTCATATCCTGATGGGACTTCTTCTGGC  700

seq1  TGCCAGCAGTGTTTGGGGAACAATGCTTCACTGTGTTCTTTTTCTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGTGTTTGGGGAACAATGCTTCACTGTGTTCTTTTTCTTGGGG  750

seq1  AGTCTATTTCCATATTTCTATATATTCTGTTTCAACTCCAGGGAGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTTCCATATTTCTATATATTCTGTTTCAACTCCAGGGAGAGTAG  800

seq1  TTAGTGCAGACTGTGGGGGCAAATTTTATATCAACTTGACACAAGTGGAC  850
      |||||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  TTAGTGCAGACTGTGGGGGCAAATTTTATATCACTTTGACAC-AGTGGAC  849

seq1  ATTTGGGAAGTGGCCACCTCT-AATGAGAAAAATGTCCAAGCCACATTGG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTGGGAAGTGGCCACCTCTAAATGAGAAAAATGTCCAAGCCACATTGG  899

seq1  CATTTGGACAAGCCTGTGGGGCATTTTTTTTTGCTTTGTTTT--GTTTTG  947
      |||||||   ||||||| ||||||||||||||||||||||||   |||||
seq2  CATTTGGGACAGCCTGT-GGGCATTTTTTTTTGCTTTGTTTTTGTTTTTG  948

seq1  ATTGATGATAGATGTGGGCGTGGGGGTTCAT-CTCATTGTGCTCGATATA  996
      ||||||||||||||  |||||||||  |||| ||||| ||||||| ||||
seq2  ATTGATGATAGATG-CGGCGTGGGG--TCATCCTCATGGTGCTCG-TATA  994

seq1  ACCCTTGGCTAGGAACCTGAATGG  1020
      ||||||||||||||| ||||||||
seq2  ACCCTTGGCTAGGAA-CTGAATGG  1017