BAC Information

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BAC

Clone NameB6Ng01-029L18
Chromosome19 (Build37)
Map Location 24,333,064 - 24,486,349
singlet/doubletdoublet
Overlap geneFxn, LOC667743, Pip5k1b, LOC100042457
Upstream geneSmc5, Mamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029L18.bB6Ng01-029L18.g
ACCDH859852DH859853
length6901,061
definitionDH859852|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L18, 5' end.DH859853|Mus musculus domesticus DNA, BAC clone: B6Ng01-029L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,485,660 - 24,486,349)(24,333,064 - 24,334,127)
sequence
gaattcaacttaggatgtccaaaaaaaaaaaaaaagaaagaaatgaggtt
cttctaatggactatttgaaacataaacaactaaaggtttataaatttta
ttataggaataaagaatttattttgtggatgataaagaatagctactttt
ttttttatcctgggagaatttacagtttccacaataaaaccagtcattcc
cagagcttccagagggagctttttgcaagtgcagtttagcttcaattagc
atgaagtaattgagcatggttattagtgtgtgaccataaaaaagtgaaat
tacaaagttaacagcagatatgccaaaagcacatactactgattaagaaa
acaggggactaaaacagcaagttggaaaaaaattaatgatgacgctgcta
ttggtatgaatatgacagtataacatccttatactctattgggaaaagtg
caagtcgaaatctctcctaggaggatcttggtagatccttccagaagtac
caatggccatctcctgaactccctggaatctctgccgcaagacacccaga
acattgcttcaggaatgaatgaacaaatgtccattacatttttttaggca
atgatacgttacctaaaagcaaaggctgagctagctgagtggttgtagct
catgcttgcaattctagctacttggtgtgggggggggggg
gaattcaatgggatatgatttcctgttgctttggccttacaggatggaag
gtagtgagttcccttggcaaccctggatccccacaaagttcacccttaca
gacattgttttttctttagaggtggttaatgggtttaaattggggcaggt
gcaatgtgagaaggcttattacaaagtgactatttaatgaaaatatcaaa
cttattagacttagctctaacacatgtgcacgtgcacacacacacacaca
cacacacacacacacacacagaagctaggaacatagttcaacgacaaaac
attcagtgagcatgctaaggccctgagtccaatccccagcaccagagaaa
acaaatctagaataacaacaaaatagctttctagtgtttatagaccgaac
atgtagcaatgtagctacaatgttgtctgtggtgactagactacggaatg
aggaaacactcccgggtcttaggcttgtgttgtggctcatggtgtggggt
ttattttcagcttgcttccagaatatgagtttatcttttgtgtggctggc
ctagaacccactacttagacgaggctgacttcaaactcatgagatcatcc
tgtctctgcctctgagtgctgggattaaagatgtgcgctaccatgcctgg
ctaggatatgagtcacacagggtcttgttatgtggctcaggcttgaaatt
ttcgatgcttcctatctctgcagttcagtctgagcagttctttggtgggg
tgggcaccatttataccccatcacagttactgtcgtctttggatagtggt
atcttgaactgtgcatcggaaacctaggcagttgtatatcacaattttta
actcatcagcatggtggcacactctgtagtcctagcactttgagacaaag
gcgggagacttattttaaatttcaagttagtctgggctactattatggta
caaaaacaatgacaaacaaatctcaagtccaaacttcatccttcttttac
ttttgaatctggagttcaaagtgccaggctcagaagagtatcccatgcct
ggagtttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24485660_24486349
seq2: B6Ng01-029L18.b_45_734 (reverse)

seq1  CCCCCCCCCCCCACACCAAGTAGCTAGAATTGCAAGCATGAGCTACAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCACACCAAGTAGCTAGAATTGCAAGCATGAGCTACAACC  50

seq1  ACTCAGCTAGCTCAGCCTTTGCTTTTAGGTAACGTATCATTGCCTAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTAGCTCAGCCTTTGCTTTTAGGTAACGTATCATTGCCTAAAAA  100

seq1  AATGTAATGGACATTTGTTCATTCATTCCTGAAGCAATGTTCTGGGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATGGACATTTGTTCATTCATTCCTGAAGCAATGTTCTGGGTGTC  150

seq1  TTGCGGCAGAGATTCCAGGGAGTTCAGGAGATGGCCATTGGTACTTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGCAGAGATTCCAGGGAGTTCAGGAGATGGCCATTGGTACTTCTGG  200

seq1  AAGGATCTACCAAGATCCTCCTAGGAGAGATTTCGACTTGCACTTTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCTACCAAGATCCTCCTAGGAGAGATTTCGACTTGCACTTTTCCC  250

seq1  AATAGAGTATAAGGATGTTATACTGTCATATTCATACCAATAGCAGCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTATAAGGATGTTATACTGTCATATTCATACCAATAGCAGCGTC  300

seq1  ATCATTAATTTTTTTCCAACTTGCTGTTTTAGTCCCCTGTTTTCTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAATTTTTTTCCAACTTGCTGTTTTAGTCCCCTGTTTTCTTAATC  350

seq1  AGTAGTATGTGCTTTTGGCATATCTGCTGTTAACTTTGTAATTTCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTATGTGCTTTTGGCATATCTGCTGTTAACTTTGTAATTTCACTTT  400

seq1  TTTATGGTCACACACTAATAACCATGCTCAATTACTTCATGCTAATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTCACACACTAATAACCATGCTCAATTACTTCATGCTAATTGAA  450

seq1  GCTAAACTGCACTTGCAAAAAGCTCCCTCTGGAAGCTCTGGGAATGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAACTGCACTTGCAAAAAGCTCCCTCTGGAAGCTCTGGGAATGACTG  500

seq1  GTTTTATTGTGGAAACTGTAAATTCTCCCAGGATAAAAAAAAAAGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTGTGGAAACTGTAAATTCTCCCAGGATAAAAAAAAAAGTAGCT  550

seq1  ATTCTTTATCATCCACAAAATAAATTCTTTATTCCTATAATAAAATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATCATCCACAAAATAAATTCTTTATTCCTATAATAAAATTTAT  600

seq1  AAACCTTTAGTTGTTTATGTTTCAAATAGTCCATTAGAAGAACCTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTAGTTGTTTATGTTTCAAATAGTCCATTAGAAGAACCTCATTT  650

seq1  CTTTCTTTTTTTTTTTTTTTGGACATCCTAAGTTGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTTTTTTTTTGGACATCCTAAGTTGAATTC  690

seq1: chr19_24333064_24334127
seq2: B6Ng01-029L18.g_66_1126

seq1  GAATTCAATGGGATATGATTTCCTGTTGCTTTGGCCTTACAGGATGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGGATATGATTTCCTGTTGCTTTGGCCTTACAGGATGGAAG  50

seq1  GTAGTGAGTTCCCTTGGCAACCCTGGATCCCCACAAAGTTCACCCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGTTCCCTTGGCAACCCTGGATCCCCACAAAGTTCACCCTTACA  100

seq1  GACATTGTTTTTTCTTTAGAGGTGGTTAATGGGTTTAAATTGGGGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTTTTTCTTTAGAGGTGGTTAATGGGTTTAAATTGGGGCAGGT  150

seq1  GCAATGTGAGAAGGCTTATTACAAAGTGACTATTTAATGAAAATATCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTGAGAAGGCTTATTACAAAGTGACTATTTAATGAAAATATCAAA  200

seq1  CTTATTAGACTTAGCTCTAACACATGTGCACGTGCACACACACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGACTTAGCTCTAACACATGTGCACGTGCACACACACACACACA  250

seq1  CACACACACACACACACACAGAAGCTAGGAACATAGTTCAACGACAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGAAGCTAGGAACATAGTTCAACGACAAAAC  300

seq1  ATTCAGTGAGCATGCTAAGGCCCTGAGTCCAATCCCCAGCACCAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAGCATGCTAAGGCCCTGAGTCCAATCCCCAGCACCAGAGAAA  350

seq1  ACAAATCTAGAATAACAACAAAATAGCTTTCTAGTGTTTATAGACCGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTAGAATAACAACAAAATAGCTTTCTAGTGTTTATAGACCGAAC  400

seq1  ATGTAGCAATGTAGCTACAATGTTGTCTGTGGTGACTAGACTACGGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAATGTAGCTACAATGTTGTCTGTGGTGACTAGACTACGGAATG  450

seq1  AGGAAACACTCCCGGGTCTTAGGCTTGTGTTGTGGCTCATGGTGTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTCCCGGGTCTTAGGCTTGTGTTGTGGCTCATGGTGTGGGGT  500

seq1  TTATTTTCAGCTTGCTTCCAGAATATGAGTTTATCTTTTGTGTGGCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAGCTTGCTTCCAGAATATGAGTTTATCTTTTGTGTGGCTGGC  550

seq1  CTAGAACCCACTACTTAGACGAGGCTGACTTCAAACTCATGAGATCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCCACTACTTAGACGAGGCTGACTTCAAACTCATGAGATCATCC  600

seq1  TGTCTCTGCCTCTGAGTGCTGGGATTAAAGATGTGCGCTACCATGCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCTCTGAGTGCTGGGATTAAAGATGTGCGCTACCATGCCTGG  650

seq1  CTAGGATATGAGTCACACAGGGTCTTGTTATGTGGCTCAGGCTTG-AATT  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAGGATATGAGTCACACAGGGTCTTGTTATGTGGCTCAGGCTTGAAATT  700

seq1  TTCGATGC-TCCTATCTCTGCAGTTCAGTCTGAGCAGTTC-TTGGTGGG-  746
      |||||||| ||||||||||||||||||||||||||||||| |||||||| 
seq2  TTCGATGCTTCCTATCTCTGCAGTTCAGTCTGAGCAGTTCTTTGGTGGGG  750

seq1  -TGGCACCATTTATACCCCATCACAGTTACTGTCGTCTTTGGATAGTGGT  795
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACCATTTATACCCCATCACAGTTACTGTCGTCTTTGGATAGTGGT  800

seq1  ATCTTGAACTGTGCATCGGAAAACCTAGGCAGTTGTATATCACAA-TTTT  844
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  ATCTTGAACTGTGCATCGG-AAACCTAGGCAGTTGTATATCACAATTTTT  849

seq1  AACTCATCAGGCATGGTGGCACAC-CTGTAGTCCTAGCACTTTGAGACAA  893
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AACTCATCA-GCATGGTGGCACACTCTGTAGTCCTAGCACTTTGAGACAA  898

seq1  AGGCAGGAGACTTATTTTAAATTCCAAGTCAGTCTGGGCTACATATCAAT  943
      |||| |||||||||||||||||| ||||| |||||||||||| |||  ||
seq2  AGGCGGGAGACTTATTTTAAATTTCAAGTTAGTCTGGGCTAC-TAT-TAT  946

seq1  GTCACAAAAACAATGACCAAACAAAATCTCAAGTCCAAACTTCCATCCTT  993
      |  ||||||||||||| ||||| ||||||||||||||||||| |||||||
seq2  GGTACAAAAACAATGA-CAAAC-AAATCTCAAGTCCAAACTT-CATCCTT  993

seq1  CTTTTACCTTTGAGCCTTGGAGTTCAAAGTGCCAGGACTACAGAAGAGCA  1043
      ||||||| |||||  | ||||||||||||||||||| || |||||||| |
seq2  CTTTTACTTTTGAATC-TGGAGTTCAAAGTGCCAGG-CT-CAGAAGAGTA  1040

seq1  TCCCCATGCCTGGAG-TTCAGA  1064
      | ||||||||||||| ||||||
seq2  T-CCCATGCCTGGAGTTTCAGA  1061