BAC Information

Click to search

BAC

Clone NameB6Ng01-029N11
Chromosome19 (Build37)
Map Location 50,550,394 - 50,551,530
singlet/doubletsinglet
Overlap geneSorcs1
Upstream geneLOC629448, Siah1-ps1, EG433251
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029N11.bB6Ng01-029N11.g
ACCDH859922DH859923
length6261,118
definitionDH859922|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N11, 5' end.DH859923|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgctcaactaaaggaacacaggaatgatatgactgctaatgaca
ttcttctatactcatagatcagtgcctcgttcaggcatcatcagagaggt
ttcttcttgtagcagatgggaacaaatacagaaacccatggccagataat
gtgcagcgacagccttaaatgggacgtcttcatcaaatgcaaattcctcc
cttcgggacacatgttaccctgaggaagaggagtcagggggatctaagac
atcagggaaacaagcacctctatgtctataagatggacagtcctatgaac
tcagtggctgaccaacatggatgggagctacccaggtctgcaccagttag
gctcttagagtcgaaaggagagctgaacacatggccccatccctggacca
gaagctatgtccaattgacaaccacttgcaaatgaaaatttagttttctc
caagggagtttcactaggaacacaaactactctttagcataaaccccata
cctagcagtagatgttttagtttttgttctgtcttattttattattgttc
cttagaagcttgttcattttctaataagacacagaaaggggttgatctgg
atgggagggaaggtagggagaaagtg

gaattcagagtcagataggagatacaacacctccaaaaagcaaagcaata
gcattgtaacagggcaggttcggggcacatcagccccaggacttatactg
ttgggtatggagagacgtccaaattaagaactggttctggaaaagaacat
atcccgaagaaattccctttagcttcacagcaaacgcccctttaatttgt
tacctggttccagccccacttggaggaaaccaaactattttccacatttg
ttcagaacatgaaagaccttaattaatcatcctagaacacaaagtgcata
gccaagctgggagactacaatctaagtagtatgaaaccttctcaaaaaga
aaaagggagtttccgagaccccacccttgctttgccaaggctgcccacgt
cggccatcacagcagtttgagaagacaacaacttatttggcatctgccac
caggaataggctctacctgacttcctggagtacccaagctccagggcatc
tgtggacactgaacaatacaacttgctcctaactgctgagagttcttcct
ctacctgcttactcttcagataagcagaaggtaggttctgagtctatcca
ttattctggtatccatatcctagcactagaactttggaccctgctgtaat
gtttgcaactcagcagaaaaccattcagaccaacgaactggattttctct
gaaggccttgggatcaattattgctacagtaaggacagaatgttctaacc
ttgaattctgaggcagtggttgcccaagtgtgctaaatccttccaaattc
caggttactagcacagtgcctcatttaggaggcatgaacatcaatgatcc
tgaactctttccagctaagtcaactaggacttctttctaggaaatggagc
tctgtgcttactggagaccaggtgagatccctacagacctgtcctccaaa
gcagcgtctcccaccacagtatgagctgccaccacaatctgttcaaactc
cttcttcagcagacgtgagcacggttgagtgtgagcaccctatggtgcat
cagaatggctgcttggtgggcatatgcttagcgattccctgccaataagt
cactcaatgctaatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_50550394_50551530
seq2: B6Ng01-029N11.g_69_1186

seq1  GAATTCAGAGTCAGATAGGAGATACAACACCTCCAAAAAGCAAAGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTCAGATAGGAGATACAACACCTCCAAAAAGCAAAGCAATA  50

seq1  GCATTGTAACAGGGCAGGTTCGGGGCACATCAGCCCCAGGACTTATACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTAACAGGGCAGGTTCGGGGCACATCAGCCCCAGGACTTATACTG  100

seq1  TTGGGTATGGAGAGACGTCCAAATTAAGAACTGGTTCTGGAAAAGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTATGGAGAGACGTCCAAATTAAGAACTGGTTCTGGAAAAGAACAT  150

seq1  ATCCCGAAGAAATTCCCTTTAGCTTCACAGCAAACGCCCCTTTAATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAAGAAATTCCCTTTAGCTTCACAGCAAACGCCCCTTTAATTTGT  200

seq1  TACCTGGTTCCAGCCCCACTTGGAGGAAACCAAACTATTTTCCACATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTCCAGCCCCACTTGGAGGAAACCAAACTATTTTCCACATTTG  250

seq1  TTCAGAACATGAAAGACCTTAATTAATCATCCTAGAACACAAAGTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACATGAAAGACCTTAATTAATCATCCTAGAACACAAAGTGCATA  300

seq1  GCCAAGCTGGGAGACTACAATCTAAGTAGTATGAAACCTTCTCAAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTGGGAGACTACAATCTAAGTAGTATGAAACCTTCTCAAAAAGA  350

seq1  AAAAGGGAGTTTCCGAGACCCCACCCTTGCTTTGCCAAGGCTGCCCACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGTTTCCGAGACCCCACCCTTGCTTTGCCAAGGCTGCCCACGT  400

seq1  CGGCCATCACAGCAGTTTGAGAAGACAACAACTTATTTGGCATCTGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATCACAGCAGTTTGAGAAGACAACAACTTATTTGGCATCTGCCAC  450

seq1  CAGGAATAGGCTCTACCTGACTTCCTGGAGTACCCAAGCTCCAGGGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGGCTCTACCTGACTTCCTGGAGTACCCAAGCTCCAGGGCATC  500

seq1  TGTGGACACTGAACAATACAACTTGCTCCTAACTGCTGAGAGTTCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACACTGAACAATACAACTTGCTCCTAACTGCTGAGAGTTCTTCCT  550

seq1  CTACCTGCTTACTCTTCAGATAAGCAGAAGGTAGGTTCTGAGTCTATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCTTACTCTTCAGATAAGCAGAAGGTAGGTTCTGAGTCTATCCA  600

seq1  TTATTCTGGTATCCATATCCTAGCACTAGAACTTTGGACCCTGCTGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGGTATCCATATCCTAGCACTAGAACTTTGGACCCTGCTGTAAT  650

seq1  GTTTGCAACTCAGCAGAAAACCATTCAGACCAACGAACTGGATTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAACTCAGCAGAAAACCATTCAGACCAACGAACTGGATTTTCTCT  700

seq1  GAAGGCCTTGGGATCAATTATTGCTACAGTAAGGACAGAATGTTCTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTTGGGATCAATTATTGCTACAGTAAGGACAGAATGTTCTAACC  750

seq1  TTGAATTCTGAGGCAGTGGTTGCCCAAGTGTGCTAAATCCTTCCAAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTGAGGCAGTGGTTGCCCAAGTGTGCTAAATCCTTCCAAATTC  800

seq1  CAGGTTACTAGCACAGTGCCTCATTTAGGAGGCATGAACATCAATGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACTAGCACAGTGCCTCATTTAGGAGGCATGAACATCAATGATCC  850

seq1  TGAACTCTTCCCAGCTAAGTCAACTAGGACTCCTTTCTAGGAAATGGAGC  900
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  TGAACTCTTTCCAGCTAAGTCAACTAGGACTTCTTTCTAGGAAATGGAGC  900

seq1  TCTGTGCTTACTGGAAGACCAGGTGAGATCCCTACAGACCTGTCCTCCAA  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTACTGG-AGACCAGGTGAGATCCCTACAGACCTGTCCTCCAA  949

seq1  AGCAGCGTTCTCCCAACCCACAGTATGAGCTGCCACCAACAATCTGTTCA  1000
      ||||||| |||||||  |||||||||||||||||||| ||||||||||||
seq2  AGCAGCG-TCTCCCA--CCACAGTATGAGCTGCCACC-ACAATCTGTTCA  995

seq1  AACTCCCTTCTTCAGCAAGACGTGAGCACGGGTGAGGTGTGAGGCACCCT  1050
      |||| ||||||||||| |||||||||||||| ||| |||||| |||||||
seq2  AACT-CCTTCTTCAGC-AGACGTGAGCACGGTTGA-GTGTGA-GCACCCT  1041

seq1  ATGGGTGCATCAG-ATGGCGTGCCTGTGGTGGGGCATATGCTTAGCAGAT  1099
      || |||||||||| ||||| |||   |||| ||||||||||||||| |||
seq2  AT-GGTGCATCAGAATGGC-TGC--TTGGT-GGGCATATGCTTAGC-GAT  1085

seq1  CCCCATGCCAATTAAGTCACTCGAAGTGCTAAATTTCA  1137
       ||| |||||| ||||||||||  | |||| |||||||
seq2  TCCC-TGCCAA-TAAGTCACTC--AATGCT-AATTTCA  1118


| Home | SequenceCutter | Blast | Download |