BAC Information

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BAC

Clone NameB6Ng01-030N21
Chromosome19 (Build37)
Map Location 58,389,519 - 58,422,433
singlet/doubletdoublet
Overlap geneGfra1
Upstream geneAI450540, Trub1, LOC100043038, Atrnl1
Downstream geneLOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N21.bB6Ng01-030N21.g
ACCDH860643DH860644
length7591,061
definitionDH860643|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N21, 5' end.DH860644|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,389,519 - 58,390,274)(58,421,360 - 58,422,433)
sequence
gaattctatgtctatcttttgtttaatatacactgggggggggggcggag
tgcaaaggagagcttgtgagctggcacaactgggacttcctgtgtgttcg
catgtgtgtagacttacatggatgtgtgtgctggtgctgtgacagcctga
ggttgacctcaagtgtctttctcatcaccctccacaccttgaggcagggt
ctccagctgaacctagagctcactggttatgctagtctagccagtaagct
gaatcccctgactccagtcccctcgaagtgcaatcacagtgggtgggcag
gccccccatctttcatgtgtgttttaagatctcaactttggtcctcatgc
ttgtgtgccacctccctagttgcaaagtcggtcttttaagacagtgtttc
cctgtagtcaaggggtttccttcctgtctagctagatgagtgagattttg
tttagtcacgggctttatggtgtcctcctatttgcagtaaataatacact
ttctcttttgtataaacagattttagtgtccaaccattctttccagggag
ttatcaaatctggctacgctctaagatcttatattttacacagctcccat
gactctgacaggcacatctgggagctggaagacctttccatggcatcagc
ctttcctatggtcttccgccttcacagtcacttatctccatagcaaacct
ggcttttctgtgtgctctggacacactttcagattgtggaccctatcaag
tgctttctg
gaattccaagtgacatgagggttgcaaatttcagtatagtagttttttac
acgattgtgactatcacacatgctgatgtggatcgctgaaggagttcctc
aaggtggagtcctgttttaaactgaggctgccagatcactctgagtggca
aagacctgagtgttatgatgatgccaggtaagggccttgtgaagatcttg
ggaatgagacacaatggccttggttacaaccagttttataactaaaatca
gagatattcccatggtgctttacaccaggcacaggaccgaattcctgcca
acctgaccaaggaactggccagggagaggcgacatacatagagtctgaga
gcataggaaggaaaggccagttaggacaaagtgaaggaccagtgagactg
cacctgccctagtaggccatgctaagctgctgatggtggcggcggggaga
ccgagttccaaccacagcagtttttgtagctgaagtgttgacgtgagaaa
ccttgggcagttcttggcagattagcaaacctttgggtctctctgcagaa
gaaattaaagttatacacagttggtgatctgctgctcctcaaagactaaa
ggagtactatttgacgggacactgttggattctgcggtgcagggccttgc
tagggttctctccctgtcttcgtggtgtgacagtggattgggtcatggcc
ggtagctggaggtgctttgaggagatgcgaatgtgaatgtctttatgctc
agaaagtgagggaggagggggaagaagacacggatgacatggcagtgttt
aggaaatgcggtttgggctgatgagatggtaccgtggtacctgatggccc
ggttcagctcactggggcagcatggtgggagagagcaacccctgcaggtc
agagtatccacatggaagcagcaaggataatctttgttagacagaaacgt
cacgcttcacgggagctttgtatgtcttgggctaagaggctaacaacccc
ctgtcaccgtgtcttgggttgaaagcttatggaaacagtaagtggtctgc
ccgcatggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58389519_58390274
seq2: B6Ng01-030N21.b_45_803

seq1  GAATTCTATGTCTATCTTTTGTTTAATATACACTGGGGGGGGGGGCGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTCTATCTTTTGTTTAATATACACTGGGGGGGGGGGCGGAG  50

seq1  TGCAAAGGAGAGCTTGTGAGCTGGCACAACTGGGACTTCCTGTGTGTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGAGAGCTTGTGAGCTGGCACAACTGGGACTTCCTGTGTGTTCG  100

seq1  CATGTGTGTAGACTTACATGGATGTGTGTGCTGGTGCTGTGACAGCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTAGACTTACATGGATGTGTGTGCTGGTGCTGTGACAGCCTGA  150

seq1  GGTTGACCTCAAGTGTCTTTCTCATCACCCTCCACACCTTGAGGCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCTCAAGTGTCTTTCTCATCACCCTCCACACCTTGAGGCAGGGT  200

seq1  CTCCAGCTGAACCTAGAGCTCACTGGTTATGCTAGTCTAGCCAGTAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGAACCTAGAGCTCACTGGTTATGCTAGTCTAGCCAGTAAGCT  250

seq1  GAATCCCCTGACTCCAGTCCCCTCGAAGTGCAATCACAGTGGGTGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCCTGACTCCAGTCCCCTCGAAGTGCAATCACAGTGGGTGGGCAG  300

seq1  GCCCCCCATCTTTCATGTGTGTTTTAAGATCTCAACTTTGGTCCTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCATCTTTCATGTGTGTTTTAAGATCTCAACTTTGGTCCTCATGC  350

seq1  TTGTGTGCCACCTCCCTAGTTGCAAAGTCGGTCTTTTAAGACAGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCCACCTCCCTAGTTGCAAAGTCGGTCTTTTAAGACAGTGTTTC  400

seq1  CCTGTAGTCAAGGGGTTTCCTTCCTGTCTAGCTAGATGAGTGAGATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGTCAAGGGGTTTCCTTCCTGTCTAGCTAGATGAGTGAGATTTTG  450

seq1  TTTAGTCACGGGCTTTATGGTGTCCTCCTATTTGCAGTAAATAATACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCACGGGCTTTATGGTGTCCTCCTATTTGCAGTAAATAATACACT  500

seq1  TTCTCTTTTGTATAAACAGATTTTAGTGTCCAACCATTCTTTCCA-GGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTCTTTTGTATAAACAGATTTTAGTGTCCAACCATTCTTTCCAGGGAG  550

seq1  TTATCAAATCTGGCTACGCTCTAAGATCTTATATTTTACACAGCTCCCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATCTGGCTACGCTCTAAGATCTTATATTTTACACAGCTCCCAT  600

seq1  GACTCTGACAGGCACATCTGGGAGCTGGAAGACC-TTCCATGGCATCAGC  648
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTCTGACAGGCACATCTGGGAGCTGGAAGACCTTTCCATGGCATCAGC  650

seq1  CTTTCCTATGGTCTTCCGCCTCCACAGTCACTTATCTCCATAGCAAACCT  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTTCCTATGGTCTTCCGCCTTCACAGTCACTTATCTCCATAGCAAACCT  700

seq1  GGC-TTTCTGTGTGCTCTGGACACACTTTCAGATTGTGGACCCTATCAGG  747
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTTTTCTGTGTGCTCTGGACACACTTTCAGATTGTGGACCCTATCAAG  750

seq1  TGCTTTCTG  756
      |||||||||
seq2  TGCTTTCTG  759

seq1: chr19_58421360_58422433
seq2: B6Ng01-030N21.g_67_1127 (reverse)

seq1  TGTCCATAGCTGTGCAGACCACTTTACTTGTTTTCCTGTAGGCTCTTCCA  50
      ||||||| || | ||||||||| |||| |||||  |  || ||| ||| |
seq2  TGTCCAT-GC-GGGCAGACCAC-TTAC-TGTTT--CCATAAGCT-TTCAA  43

seq1  ACCCAGACACGGTGACAGGGTGTTGTTAGCCTCTTAGCCCAAGACATTAC  100
       || |||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CCCAAGACACGGTGACAGGGGGTTGTTAGCCTCTTAGCCCAAGACA-TAC  92

seq1  AAAGCTCACCGTGAAGCCGTGACGTTTCTGTCTAAC-AAGATTATCCCTG  149
      ||||||| |||||||| ||||||||||||||||||| |||||||||| ||
seq2  AAAGCTC-CCGTGAAG-CGTGACGTTTCTGTCTAACAAAGATTATCCTTG  140

seq1  CTGCTTCCATGTGGATACTCTGACCTTGCAGGGGTTGGCTCTCTTCCCAC  199
      ||||||||||||||||||||||||| |||||||||| |||||| ||||||
seq2  CTGCTTCCATGTGGATACTCTGACC-TGCAGGGGTT-GCTCTC-TCCCAC  187

seq1  CATGCTGGCCCAGTGAGCTGAACCGGGCCATCAGGTACCACGGTACCATC  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCCCCAGTGAGCTGAACCGGGCCATCAGGTACCACGGTACCATC  237

seq1  TCATCAGCCCAAACCTGCATTTCCTAAACACTGCCATGTCATCCGTGTCT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATCAGCCCAAACC-GCATTTCCTAAACACTGCCATGTCATCCGTGTCT  286

seq1  TCTTCCCCCTCCTCCCTCACTTTCTGAGCATAAAGACATTCACATTCGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCCTCCTCCCTCACTTTCTGAGCATAAAGACATTCACATTCGCA  336

seq1  TCTCCTCAAAGCACCTCCAGCTACCGGCCATGACCCAATCCACTGTCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAAAGCACCTCCAGCTACCGGCCATGACCCAATCCACTGTCACA  386

seq1  CCACGAAGACAGGGAGAGAACCCTAGCAAGGCCCTGCACCGCAGAATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAAGACAGGGAGAGAACCCTAGCAAGGCCCTGCACCGCAGAATCCA  436

seq1  ACAGTGTCCCGTCAAATAGTACTCCTTTAGTCTTTGAGGAGCAGCAGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCCGTCAAATAGTACTCCTTTAGTCTTTGAGGAGCAGCAGATC  486

seq1  ACCAACTGTGTATAACTTTAATTTCTTCTGCAGAGAGACCCAAAGGTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGTGTATAACTTTAATTTCTTCTGCAGAGAGACCCAAAGGTTTG  536

seq1  CTAATCTGCCAAGAACTGCCCAAGGTTTCTCACGTCAACACTTCAGCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGCCAAGAACTGCCCAAGGTTTCTCACGTCAACACTTCAGCTAC  586

seq1  AAAAACTGCTGTGGTTGGAACTCGGTCTCCCCGCCGCCACCATCAGCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGCTGTGGTTGGAACTCGGTCTCCCCGCCGCCACCATCAGCAGC  636

seq1  TTAGCATGGCCTACTAGGGCAGGTGCAGTCTCACTGGTCCTTCACTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGGCCTACTAGGGCAGGTGCAGTCTCACTGGTCCTTCACTTTGT  686

seq1  CCTAACTGGCCTTTCCTTCCTATGCTCTCAGACTCTATGTATGTCGCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTGGCCTTTCCTTCCTATGCTCTCAGACTCTATGTATGTCGCCTC  736

seq1  TCCCTGGCCAGTTCCTTGGTCAGGTTGGCAGGAATTCGGTCCTGTGCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCCAGTTCCTTGGTCAGGTTGGCAGGAATTCGGTCCTGTGCCTG  786

seq1  GTGTAAAGCACCATGGGAATATCTCTGATTTTAGTTATAAAACTGGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGCACCATGGGAATATCTCTGATTTTAGTTATAAAACTGGTTGT  836

seq1  AACCAAGGCCATTGTGTCTCATTCCCAAGATCTTCACAAGGCCCTTACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGCCATTGTGTCTCATTCCCAAGATCTTCACAAGGCCCTTACCT  886

seq1  GGCATCATCATAACACTCAGGTCTTTGCCACTCAGAGTGATCTGGCAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCATCATAACACTCAGGTCTTTGCCACTCAGAGTGATCTGGCAGCC  936

seq1  TCAGTTTAAAACAGGACTCCACCTTGAGGAACTCCTTCAGCGATCCACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTAAAACAGGACTCCACCTTGAGGAACTCCTTCAGCGATCCACAT  986

seq1  CAGCATGTGTGATAGTCACAATCGTGTAAAAAACTACTATACTGAAATTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTGTGATAGTCACAATCGTGTAAAAAACTACTATACTGAAATTT  1036

seq1  GCAACCCTCATGTCACTTGGAATTC  1074
      |||||||||||||||||||||||||
seq2  GCAACCCTCATGTCACTTGGAATTC  1061