BAC Information

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BAC

Clone NameB6Ng01-032C23
Chromosome19 (Build37)
Map Location 57,921,644 - 58,046,303
singlet/doubletdoublet
Overlap geneAtrnl1
Upstream geneTdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540, Trub1, LOC100043038
Downstream geneGfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a, 6430537H07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032C23.bB6Ng01-032C23.g
ACCDH861595DH861596
length1,0631,107
definitionDH861595|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C23, 5' end.DH861596|Mus musculus domesticus DNA, BAC clone: B6Ng01-032C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,045,238 - 58,046,303)(57,921,644 - 57,922,752)
sequence
gaattcttccatttgtggaggggttattgctctactaattacagtgacca
cttcaacagaagatgaagacaacagcagcttcctgtctggctgcactgag
gctgaaatatatgctgggaagggattcagccctgtcttacacagaaacac
attcaacctcgaaatgtcaatgctcttctacccaaagatgatttctacag
tttaggtagccaagaactgagagctttactttccctatcacttggacctt
taaaggaagctgcttttagcatcttgcacttaataacttctagccttcat
cgcaccactaaacaggctgtgcacagctgcctgttaccctccaaccccat
ctaactgcaagcctgggacttatccaatacttggtgattccaggctgatg
ttggcttgaggtgtgaagtctgaggactcttaaggtagggacaggaaatt
gggaataaggttttgtacaataggtgtaaggtgaggatactggatctgaa
tctaaaacaatacactggaaatctaggaatccaacaaatagtggggatgg
cccagtgactaagagtgcctgttgctcattcagagggctggagttcagtt
gccaacacctacacccactgctcaccaccaccttactccccgctccagga
gatccagcgcccacttcttgactctgcaagcactacaattacttacacct
gtgcgcacacagacatatatatatacttaaaagcagaaaaactagtctta
aaagagtcctatccatccacataacgagtcagatacatgtagacagagaa
cttagtgatttttaaagcactcacctacctttgaaaaatttaaatataaa
ttaaaatgtttaggtgatctttcaaggaaacatttccctttactcaaatc
tagagctcaccaccaacaccaacgtcataaggaaaaatgagggtggactt
cgcagcagcagaggttccccgaagcttgggagatgaaactttccaattaa
ggtgtgttttgtttcttttaggtgtttgtgaaactggaactaggacccca
caccgcttgcgca
gaattcagacgccatagttaaaggtgtaccgaacagagagacacagcaaa
gtgctgggggcatccgcctgcgtaataaagggagttagactttgctttca
gtgaaatactgaacagaaaatagaaaggcaataatgtcgagcataacgac
tattggtcaacttacacgtggagcatgaagctgacccttcccagccactg
gaagtttccccttctggcctaaccactgagagcttcctctggctttcagg
gggctgggggagacacaggtagggcatcccagaaagagtggccctcggct
gcaggaagcatctcttgtaagagtgtcttctgcacctgtgacactgttag
ctccccctctgcagctgtcaagttgccagcccttagatccttcacccaag
gctaaggctctctccatcccaaccgtccttccctgaacaattatgtcaat
aaacctaacccgacaacgaatgtggagcttttcttcttgcagtggtgttt
gctagcatgcggagcaaattctcagccaaggaaactggattatagttgta
ttcatatcgtataaaatagaatttattacaagtgtattaagtgataaaga
cagtaatcaatgagttatcttaatagacaaatatagtaagtctgaatttt
aactccccaatagcatagcttcatcatcttaagatgccaaaaattaaaat
actatcagtaaaatgtataaacgtatctctcccagtatgtgataggacag
aatttaaaacttatgaaagaactaaataattttgaatacaaaaaattact
atgatttatgagatatatgaaaatcctagtccaaaataaaaaacatacat
ttaaaacagtatttacctttctttgaatttttccaataatatacccagaa
tcctacccataactcctccccaaatcacaaagttgttccctgttcccgtt
tcacatgacccatagtctatagtttgtatctttctacagtgagaggtcac
gtctgggctgaagttgactttccaggagtcatgcctttaaacctacttga
acacctcttggaagcatcagtggttgttaagtggtggagaacaaaaccct
tgcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_58045238_58046303
seq2: B6Ng01-032C23.b_46_1108 (reverse)

seq1  TGCGC-AGCGTTGTGGCGTCCTAGTTCCCAGTATCACAAAACACACTAAA  49
      ||||| |||| ||||| ||||||||| ||||| |||| |||||| ||  |
seq2  TGCGCAAGCGGTGTGGGGTCCTAGTT-CCAGTTTCAC-AAACAC-CT--A  45

seq1  AAAGAAACAAAAACAACACTTAAATTGGAAAGTATCATCT-CCAAGCTTC  98
      ||||||||||||   |||| | ||||||||||| |||||| |||||||||
seq2  AAAGAAACAAAA--CACACCTTAATTGGAAAGTTTCATCTCCCAAGCTTC  93

seq1  GGGGAACCTTCTGCTGCTGCGAGGTCCACCCTCA-TTTTCCTTATGACGT  147
      |||||||| ||||||||||||| ||||||||||| |||||||||||||||
seq2  GGGGAACC-TCTGCTGCTGCGAAGTCCACCCTCATTTTTCCTTATGACGT  142

seq1  TGGTGTTGGTGGTGAGCTCTAGATTTGAGT-AAGGGAAATGTTTCCTTG-  195
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TGGTGTTGGTGGTGAGCTCTAGATTTGAGTAAAGGGAAATGTTTCCTTGA  192

seq1  AAGATCACCTAAACATTTTAATTTATATTTAAATTTTTCAAAGGTAGGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACCTAAACATTTTAATTTATATTTAAATTTTTCAAAGGTAGGTG  242

seq1  AGTGCTTTAAAAATCACTAAGTTCTCTGTCTACATGTATCTGACTCGTTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTAAAAATCACTAAGTTCTCTGTCTACATGTATCTGACTCGTTA  292

seq1  TGTGGATGGATAGGACTCTTTTAAGACTAGTTTTTCTGCTTTTAAGTATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGGATAGGACTCTTTTAAGACTAGTTTTTCTGCTTTTAAGTATA  342

seq1  TATATATGTCTGTGTGCGCACAGGTGTAAGTAATTGTAGTGCTTGCAGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTCTGTGTGCGCACAGGTGTAAGTAATTGTAGTGCTTGCAGAG  392

seq1  TCAAGAAGTGGGCGCTGGATCTCCTGGAGCGGGGAGTAAGGTGGTGGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTGGGCGCTGGATCTCCTGGAGCGGGGAGTAAGGTGGTGGTGA  442

seq1  GCAGTGGGTGTAGGTGTTGGCAACTGAACTCCAGCCCTCTGAATGAGCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGTGTAGGTGTTGGCAACTGAACTCCAGCCCTCTGAATGAGCAA  492

seq1  CAGGCACTCTTAGTCACTGGGCCATCCCCACTATTTGTTGGATTCCTAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTCTTAGTCACTGGGCCATCCCCACTATTTGTTGGATTCCTAGA  542

seq1  TTTCCAGTGTATTGTTTTAGATTCAGATCCAGTATCCTCACCTTACACCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGTATTGTTTTAGATTCAGATCCAGTATCCTCACCTTACACCT  592

seq1  ATTGTACAAAACCTTATTCCCAATTTCCTGTCCCTACCTTAAGAGTCCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAAAACCTTATTCCCAATTTCCTGTCCCTACCTTAAGAGTCCTC  642

seq1  AGACTTCACACCTCAAGCCAACATCAGCCTGGAATCACCAAGTATTGGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCACACCTCAAGCCAACATCAGCCTGGAATCACCAAGTATTGGAT  692

seq1  AAGTCCCAGGCTTGCAGTTAGATGGGGTTGGAGGGTAACAGGCAGCTGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGGCTTGCAGTTAGATGGGGTTGGAGGGTAACAGGCAGCTGTG  742

seq1  CACAGCCTGTTTAGTGGTGCGATGAAGGCTAGAAGTTATTAAGTGCAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGTTTAGTGGTGCGATGAAGGCTAGAAGTTATTAAGTGCAAGA  792

seq1  TGCTAAAAGCAGCTTCCTTTAAAGGTCCAAGTGATAGGGAAAGTAAAGCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAAGCAGCTTCCTTTAAAGGTCCAAGTGATAGGGAAAGTAAAGCT  842

seq1  CTCAGTTCTTGGCTACCTAAACTGTAGAAATCATCTTTGGGTAGAAGAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCTTGGCTACCTAAACTGTAGAAATCATCTTTGGGTAGAAGAGC  892

seq1  ATTGACATTTCGAGGTTGAATGTGTTTCTGTGTAAGACAGGGCTGAATCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATTTCGAGGTTGAATGTGTTTCTGTGTAAGACAGGGCTGAATCC  942

seq1  CTTCCCAGCATATATTTCAGCCTCAGTGCAGCCAGACAGGAAGCTGCTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCATATATTTCAGCCTCAGTGCAGCCAGACAGGAAGCTGCTGT  992

seq1  TGTCTTCATCTTCTGTTGAAGTGGTCACTGTAATTAGTAGAGCAATAACC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATCTTCTGTTGAAGTGGTCACTGTAATTAGTAGAGCAATAACC  1042

seq1  CCTCCACAAATGGAAGAATTC  1066
      |||||||||||||||||||||
seq2  CCTCCACAAATGGAAGAATTC  1063

seq1: chr19_57921644_57922752
seq2: B6Ng01-032C23.g_66_1171

seq1  GAATTCAGACGCCATAGTTAAAGGTGTACCGAACAGAGAGACACAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACGCCATAGTTAAAGGTGTACCGAACAGAGAGACACAGCAAA  50

seq1  GTGCTGGGGGCATCCGCCTGCGTAATAAAGGGAGTTAGACTTTGCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGGCATCCGCCTGCGTAATAAAGGGAGTTAGACTTTGCTTTCA  100

seq1  GTGAAATACTGAACAGAAAATAGAAAGGCAATAATGTCGAGCATAACGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATACTGAACAGAAAATAGAAAGGCAATAATGTCGAGCATAACGAC  150

seq1  TATTGGTCAACTTACACGTGGAGCATGAAGCTGACCCTTCCCAGCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCAACTTACACGTGGAGCATGAAGCTGACCCTTCCCAGCCACTG  200

seq1  GAAGTTTCCCCTTCTGGCCTAACCACTGAGAGCTTCCTCTGGCTTTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCCCTTCTGGCCTAACCACTGAGAGCTTCCTCTGGCTTTCAGG  250

seq1  GGGCTGGGGGAGACACAGGTAGGGCATCCCAGAAAGAGTGGCCCTCGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGGAGACACAGGTAGGGCATCCCAGAAAGAGTGGCCCTCGGCT  300

seq1  GCAGGAAGCATCTCTTGTAAGAGTGTCTTCTGCACCTGTGACACTGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAGCATCTCTTGTAAGAGTGTCTTCTGCACCTGTGACACTGTTAG  350

seq1  CTCCCCCTCTGCAGCTGTCAAGTTGCCAGCCCTTAGATCCTTCACCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCTGCAGCTGTCAAGTTGCCAGCCCTTAGATCCTTCACCCAAG  400

seq1  GCTAAGGCTCTCTCCATCCCAACCGTCCTTCCCTGAACAATTATGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCTCTCTCCATCCCAACCGTCCTTCCCTGAACAATTATGTCAAT  450

seq1  AAACCTAACCCGACAACGAATGTGGAGCTTTTCTTCTTGCAGTGGTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAACCCGACAACGAATGTGGAGCTTTTCTTCTTGCAGTGGTGTTT  500

seq1  GCTAGCATGCGGAGCAAATTCTCAGCCAAGGAAACTGGATTATAGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATGCGGAGCAAATTCTCAGCCAAGGAAACTGGATTATAGTTGTA  550

seq1  TTCATATCGTATAAAATAGAATTTATTACAAGTGTATTAAGTGATAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCGTATAAAATAGAATTTATTACAAGTGTATTAAGTGATAAAGA  600

seq1  CAGTAATCAATGAGTTATCTTAATAGACAAATATAGTAAGTCTGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCAATGAGTTATCTTAATAGACAAATATAGTAAGTCTGAATTTT  650

seq1  AACTCCCCAATAGCATAGCTTCATCATCTTAAGATGCCAAAAATTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCAATAGCATAGCTTCATCATCTTAAGATGCCAAAAATTAAAAT  700

seq1  ACTATCAGTAAAATGTATAAACGTATCTCTCCCAGTATGTGATAGGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAGTAAAATGTATAAACGTATCTCTCCCAGTATGTGATAGGACAG  750

seq1  AATTTAAAACTTATGAAAGAACTAAATAATTTTGAATACAAAAAATTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACTTATGAAAGAACTAAATAATTTTGAATACAAAAAATTACT  800

seq1  ATGATTTATGAGATATATG-AAATCCTAGTCCAAAATAAAAAACATACAT  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGATTTATGAGATATATGAAAATCCTAGTCCAAAATAAAAAACATACAT  850

seq1  TTAAAACAGTATTTACC-TTCTTTGAAATTTTTCCAATAATATACCCAGA  898
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TTAAAACAGTATTTACCTTTCTTTG-AATTTTTCCAATAATATACCCAGA  899

seq1  ATCCTACCCATAACTCCTCCCCAAATCACCAAAGTTGTTCCCTGTTCCCG  948
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCCTACCCATAACTCCTCCCCAAATCA-CAAAGTTGTTCCCTGTTCCCG  948

seq1  TTTTCACATGACCCATAGTCTATAGTTTGTATCTTTCTACAGTGAGAGGT  998
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTCACATGACCCATAGTCTATAGTTTGTATCTTTCTACAGTGAGAGGT  997

seq1  CACGTTCTGGGCTGAGGTTGACTTTCCAGGAGCCATGCCTTTTAAAACCT  1048
      |||| |||||||||| |||||||||||||||| |||||||||  ||||||
seq2  CACG-TCTGGGCTGAAGTTGACTTTCCAGGAGTCATGCCTTT--AAACCT  1044

seq1  ACTTG-ACACCTCTTGGAAGCATCAGGTGTCTGTT-AGTGGTGGAGACCA  1096
      ||||| ||||||||||||||||||| |||  |||| ||||||||||| ||
seq2  ACTTGAACACCTCTTGGAAGCATCA-GTGGTTGTTAAGTGGTGGAGAACA  1093

seq1  AAACCCTGGCAAC  1109
      ||||||| |||||
seq2  AAACCCTTGCAAC  1106