BAC Information

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BAC

Clone NameB6Ng01-033K05
Chromosome19 (Build37)1 (Build37)
Map Location 22,038,863 - 22,039,272124,016,406 - 124,016,949
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K05.bB6Ng01-033K05.g
ACCDH862628DH862629
length253950
definitionDH862628|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K05, 5' end.DH862629|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,038,863 - 22,039,272)(124,016,406 - 124,016,949)
sequence
ccatcttagatactccttggaggttgtttgtgactgtgtgtctatgagtg
cctctctctctctctctctctctctctctctctctctctctctctctgta
tatatatatacacatatgtgtgtgtgtgtgtgtgtgtgtgaaagagagag
aaacactcacacatacacacaacacatatgtgtgtgtgtgtgtgttcctc
tccccccctatatatatatctccccctctctctctgtgtttgtgtgtgtg
tgt
gaattcacaaaaatgtacctatccacacaaaatattaatgaatgtaaata
aatatgagaataatatttctctttgagatactgattttagtataatcctt
taaatacacacctaataaatatacactcaacaatgctattgctgcatgat
atagtagtttcatatttaataatttgaggaatgttggaattgtttccttg
atgactgaatggtttacattcccatcaaccataacaggtttcctgtaatc
ttcctgccagttcccaaacttattccttttcttggatagtctctatccag
tcctcagtgaagtggtgtcttatcgtagctatgatttatactttttcaat
catgtcaggtgattggtaaaggtgacctttatatctgtgagctgcatctg
ttgtgctttgaattaaagtgatccctataggctgtttgaatacttggtcc
ctggtggttggaactgtttgagaagaatgaggaggtaaggtcttgtagag
gattcaaaagatgtgtgtcattcctagtgtgttttatctgcctcttgttt
atagatcaaggtgtaggctctccgctgttccttcctccatgactttgctc
agccagtatagaatatctccttgaaacaataattccaaataaatgttttt
attattagttgccttggtcgtggtattttattacagcaatataaatgaaa
ctaatacaacattcttaggaaaattctgacagatttttaaggatgaatca
tgggtggactgtccagaaagaaactaacaaatagttcccttcaaaccctg
ttgtgtattaaaagaaagagcctcaaggacagttcttggagtatgagagc
taaacataaaatggataggccaaccataatgaagtttgaggggaggaaga
gtctccctttacacccaaccaatgacaaagctatgaccctgttgttgatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22038863_22039272
seq2: B6Ng01-033K05.b_106_307 (reverse)

seq1  ACACACACACACAAACACACACACACACACACACACACAGTGAGCAAATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTATAGGTAAGATAATATTTTCAATGCTTCATAGACCAGCCACTGTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAGTGAGAACATTTAATGTACATTTACTGTATTCACCAGGGTTCTCTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGAACAGAACTAATAAAATTACATACACACAGACACACACAAACACAC  200
                                    ||| ||||||||||||||| 
seq2  ------------------------------ACACACACACACAAACACAG  20

seq1  ACACACA----CACACACACACACA------------CACACACACTCAC  234
      | | | |     | | | | | | |             |||||||| |||
seq2  AGAGAGAGGGGGAGATATATATATAGGGGGGGAGAGGAACACACACACAC  70

seq1  ACACACACTGCCCTCATATCAGAATTTGACA-TGAACATAT-ACATGCAT  282
      ||||| | ||   |  | |  | || ||  | ||    | |  | | || 
seq2  ACACATA-TG---TGTTGTGTGTATGTGTGAGTGTTTCTCTCTCTTTCAC  116

seq1  AAACACACAAAAATCATAGACCACAGACCAATTTTTGTATGTATACATAC  332
      | ||||||| |          |||| ||  || | ||||| |||| ||  
seq2  ACACACACACA----------CACACACACATATGTGTATATATATAT--  154

seq1  ATACATACATACAACCCCCCCCACACACACACAGAGAGAGAGAGAGAGAG  382
                                    ||||||||||||||||||||
seq2  ------------------------------ACAGAGAGAGAGAGAGAGAG  174

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAG  410
      ||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAG  202

seq1: chr1_124016406_124016949
seq2: B6Ng01-033K05.g_67_610 (reverse)

seq1  GAGGCAGATAAAACACACTAGGAATGACACACATCTTTTGAATCCTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATAAAACACACTAGGAATGACACACATCTTTTGAATCCTCTAC  50

seq1  AAGACCTTACCTCCTCATTCTTCTCAAACAGTTCCAACCACCAGGGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTACCTCCTCATTCTTCTCAAACAGTTCCAACCACCAGGGACCA  100

seq1  AGTATTCAAACAGCCTATAGGGATCACTTTAATTCAAAGCACAACAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAAACAGCCTATAGGGATCACTTTAATTCAAAGCACAACAGATG  150

seq1  CAGCTCACAGATATAAAGGTCACCTTTACCAATCACCTGACATGATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACAGATATAAAGGTCACCTTTACCAATCACCTGACATGATTGAA  200

seq1  AAAGTATAAATCATAGCTACGATAAGACACCACTTCACTGAGGACTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAAATCATAGCTACGATAAGACACCACTTCACTGAGGACTGGAT  250

seq1  AGAGACTATCCAAGAAAAGGAATAAGTTTGGGAACTGGCAGGAAGATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTATCCAAGAAAAGGAATAAGTTTGGGAACTGGCAGGAAGATTAC  300

seq1  AGGAAACCTGTTATGGTTGATGGGAATGTAAACCATTCAGTCATCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTGTTATGGTTGATGGGAATGTAAACCATTCAGTCATCAAGGA  350

seq1  AACAATTCCAACATTCCTCAAATTATTAAATATGAAACTACTATATCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCCAACATTCCTCAAATTATTAAATATGAAACTACTATATCATG  400

seq1  CAGCAATAGCATTGTTGAGTGTATATTTATTAGGTGTGTATTTAAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAGCATTGTTGAGTGTATATTTATTAGGTGTGTATTTAAAGGAT  450

seq1  TATACTAAAATCAGTATCTCAAAGAGAAATATTATTCTCATATTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAAATCAGTATCTCAAAGAGAAATATTATTCTCATATTTATTTA  500

seq1  CATTCATTAATATTTTGTGTGGATAGGTACATTTTTGTGAATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTAATATTTTGTGTGGATAGGTACATTTTTGTGAATTC  544