BAC Information

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BAC

Clone NameB6Ng01-035A01
Chromosome19 (Build37)2 (Build37)
Map Location 49,562,626 - 49,563,4253,018,399 - 3,018,636
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035A01.bB6Ng01-035A01.g
ACCDH863591DH863592
length798753
definitionDH863591|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A01, 5' end.DH863592|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,562,626 - 49,563,425)(3,018,399 - 3,018,636)
sequence
gaattctttctttctccttaccccgaccaccagctgcagaaatcttccaa
taagtgagagggttacactgcccaggagaaacagagggatacaagtactt
taagtgaagctgaagaggaacaaggatgatagatgacaaggtagggaaag
aaaagccagagatgagctgttcatttggatacaacagaattgtgcaaaag
cctacgtgggctggaatcaggccagcaagaatataggttaattataatgg
cataggttacagaatacattagatctttctaccctatgtcattattattg
tgcagctatcatggggtttgacccagatttcatttcaagaattcatttct
ctcctttttaatctgtaatccagatttgtgtggtagctgttgaagaagaa
ctgatattctccaacgagtaaacagcgaagaccaaagattagggaagctt
gctgttctttccagctcccagcatggtgctctcataataaaagccaattc
ttgctctcatttttccatctgaaaaattcaattcattgtaaattgaaaca
aataaaaccctacatactacaaattgcattcgaggtgttcagtgatttgc
aggctgatgatatcgagagattgttttatcagctctgaaggaaatattca
tcactattttggcagcattgtcactcacacatggaagcatcctttatatt
tacttgagcagaaaagacaggagctagctcttggaagaaagtgtagaact
tgagtcactgagaatactttgtaaagctcctacataaaaatgaaaagc
gaattcactgtttaggtctgtacactattttaattggcttatttttgtgt
ctaatttcttgagttctttatatattttggatattatttctctctcagat
gtagagtttgtgaaactctttttctattctataagcagtcactttgtcca
actgatgtggtcctttgccttacagaagctttgcatatggtgtcatgtat
taattgttgatcttaatgcctaaaactattggtgttttgttcagaaagtc
atttcttatgccaatgaactaaagtctattccccactctctcttctatca
ggttatcaggttcagtgggtcttgttttatgttgagatttttgatccact
tggacatgatttttgtgcagggtgataaatgtggatcaattttcattctt
ttacatgtggccatccttgagaagtatcaatttttaaagagtctgtctgt
tttacaatatgtattattgacttatttatcaaaaattagttgtacataat
tgtttaggtttatccacaggtcttcaacttgattctattgatcaaaatgt
ctgatgtgataccaacaccatgcaattgttttttttttaactataggttt
tagtacaaaatgaaatcagggatggtgataccttcagtagttcttttatt
gttaatgactgtatgagctctcctgttttgctttggtttcggtttgggtt
tttttttttttggtgttttttggttgttggtttttggttttgaaacaggg
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49562626_49563425
seq2: B6Ng01-035A01.b_49_846 (reverse)

seq1  GCTTTTCATTTTTAATGTAAGAGGCTTAACAAAGTA-TCTCAGTTGACTC  49
      ||||||||||||| ||||| || |||| |||||||| |||||| ||||||
seq2  GCTTTTCATTTTT-ATGTAGGA-GCTTTACAAAGTATTCTCAG-TGACTC  47

seq1  AAGTTCTACACCTTTCTTCCAAGAGCTTGCTCCTGTCTTTTCTGCTCAGG  99
      |||||||||| |||||||||||||||| |||||||||||||||||||| |
seq2  AAGTTCTACA-CTTTCTTCCAAGAGCTAGCTCCTGTCTTTTCTGCTCAAG  96

seq1  TAAATATAAAGGATGCTTCCATGTGTGAGTGACAATGCTGCCAAAATAGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAAGGATGCTTCCATGTGTGAGTGACAATGCTGCCAAAATAGT  146

seq1  GATGAATATTTCCTTCAGAGCTGATAAAACAATCTCTCGATATCATCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATTTCCTTCAGAGCTGATAAAACAATCTCTCGATATCATCAGC  196

seq1  CTGCAAATCACTGAACACCTCGAATGCAATTTGTAGTATGTAGGGTTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCACTGAACACCTCGAATGCAATTTGTAGTATGTAGGGTTTTA  246

seq1  TTTGTTTCAATTTACAATGAATTGAATTTTTCAGATGG-AAAATGAGAGC  298
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTTTCAATTTACAATGAATTGAATTTTTCAGATGGAAAAATGAGAGC  296

seq1  AAGAATTGGCTTTTATTATGAGAGCACCATGCTGGGAGCTGGAAAGAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTGGCTTTTATTATGAGAGCACCATGCTGGGAGCTGGAAAGAACA  346

seq1  GCAAGCTTCCCTAATCTTTGGTCTTCGCTGTTTACTCGTTGGAGAATATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTCCCTAATCTTTGGTCTTCGCTGTTTACTCGTTGGAGAATATC  396

seq1  AGTTCTTCTTCAACAGCTACCACACAAATCTGGATTACAGATTAAAAAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCTTCAACAGCTACCACACAAATCTGGATTACAGATTAAAAAGG  446

seq1  AGAGAAATGAATTCTTGAAATGAAATCTGGGTCAAACCCCATGATAGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGAATTCTTGAAATGAAATCTGGGTCAAACCCCATGATAGCTG  496

seq1  CACAATAATAATGACATAGGGTAGAAAGATCTAATGTATTCTGTAACCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAATAATGACATAGGGTAGAAAGATCTAATGTATTCTGTAACCTA  546

seq1  TGCCATTATAATTAACCTATATTCTTGCTGGCCTGATTCCAGCCCACGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTATAATTAACCTATATTCTTGCTGGCCTGATTCCAGCCCACGTA  596

seq1  GGCTTTTGCACAATTCTGTTGTATCCAAATGAACAGCTCATCTCTGGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGCACAATTCTGTTGTATCCAAATGAACAGCTCATCTCTGGCTT  646

seq1  TTCTTTCCCTACCTTGTCATCTATCATCCTTGTTCCTCTTCAGCTTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCTACCTTGTCATCTATCATCCTTGTTCCTCTTCAGCTTCACT  696

seq1  TAAAGTACTTGTATCCCTCTGTTTCTCCTGGGCAGTGTAACCCTCTCACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACTTGTATCCCTCTGTTTCTCCTGGGCAGTGTAACCCTCTCACT  746

seq1  TATTGGAAGATTTCTGCAGCTGGTGGTCGGGGTAAGGAGAAAGAAAGAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAGATTTCTGCAGCTGGTGGTCGGGGTAAGGAGAAAGAAAGAAT  796

seq1  TC  800
      ||
seq2  TC  798

seq1: chr2_3018399_3018636
seq2: B6Ng01-035A01.g_737_808

seq1  TTTGGTTTTGG---GGTTTTTTTTTTTTTTGGTTGGTTGGTTTTTTGG-G  46
      |||||||| ||   || ||||||||||||||||      |||||||||  
seq2  TTTGGTTTCGGTTTGGGTTTTTTTTTTTTTGGT------GTTTTTTGGTT  44

seq1  GTT--TTTTTGG-GGGGAGGTTGGGTTTTTTGTCTGACTCAAAAGCCATT  93
      |||  |||||||    ||    ||||||                      
seq2  GTTGGTTTTTGGTTTTGAAACAGGGTTT----------------------  72

seq1  GCTCTTTTTCATTTTGTTGTGCTAGAGATTTTACCAGGACCTCATGCATT  143
                                                        
seq2  --------------------------------------------------  72

seq1  CCAGGTAACTTCCCTATCACTGAGTGACATCCTTGAACACTAAGATTTTG  193
                                                        
seq2  --------------------------------------------------  72

seq1  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTGAAACAGGGTTT  238
                                                   
seq2  ---------------------------------------------  72