BAC Information

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BAC

Clone NameB6Ng01-035K12
Chromosome19 (Build37)
Map Location 24,405,871 - 24,458,404
singlet/doubletdoublet
Overlap genePip5k1b
Upstream geneMamdc2, 1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457
Downstream gene2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K12.bB6Ng01-035K12.g
ACCDH864065DH864066
length928946
definitionDH864065|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K12, 5' end.DH864066|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,405,871 - 24,406,816)(24,457,423 - 24,458,404)
sequence
gaattctctgttacttcccagaagccacctggcccttatctctgccgagc
agcctgaccacagcatcctgatacctatttttaaaaatttacttaatttt
ttttacgtgtaggaatggtctgcctgcatatatatatatatctgtgcacc
atgtgtgttcagtgcctacagaggcagaagagggtatatggccctctgga
actgggttcacagatggttgtgagccaccatgtggatgctgggaaatgaa
cccaggtcctctctgagagcagtaagtgtccttaaccactgagccatctc
tccagctgtacactctgataccgtaaggaccagaagtcccctcataaaga
tttttctttcaacagttatttttgctcacagtagttcttttcccctgatg
cttttctgcacaacaaaaaccaccataaaaaaaaatcccaaaaacccaaa
ctctcctttaggcggggttgctctcatttctcttgggggcagcccagtag
ttcatgcctaaaataaagaactttgtcctcaacgtagctctggtggtctc
actctctcaccagcccttacaccctccttttcctttgctccattttcttt
cttccagagttcatggaggggagacataatatctgaagccatggcagcca
tcttgtgacgatggggcaacacaatagcaaaaatttaaaggtgagagaga
gcagaatggagtgatgggaacaccctggatctttgaggatgtcagcaggc
tgacctctatctttagacttcatcagtagtggactatgtaaattggagca
gagtcttctcaatgccaccttgagtgtatgacattctcgacatgaggttg
tactgtctttggggctagaggagagtgactctgaaacatcggtgatgacc
gagactttagctgtctgacttcactacc
gaattcatggctggatctgccatggttaaaaaaaaaaaaaaaaacaaaaa
aaaaaaaacaaaaaaaacaaaaacaaaaaaaacttctcattacaacaaca
acaaaaaccagataatttgtttgttgcttgcttggttttgttgttgttgt
ttttgaaacatagtctttcaatttagtagaactcactatgtagaccaagc
ttgccttgaagtcgcagaggtccacctctctcttctgggattaaaggcat
gtgccatcacgcccagcaaagccatataatttaatcatagccttggaata
aatttgattgcatgcttgtcaacctataaagcattgagttataaccaagt
agagatgtcagttacaatgttagacacatttggagccctggagctctgag
ctgcagatgtcacatcatcctctgttgaagcagtgacagttggcagtatc
tcctgggagagcagaggagagagaagacagaggggttgtgttgaagtggt
gcatacgcatggacccttgaccttcagctgggccttcacaggcttgctgt
aaacatagcaccttctgctgcattcctgtttaacgatctcacaaggctga
cgggggtgacccctgattctgtcatatgggcactgggacatggaggaagg
atgcttctttcccatcatggaattataaacataagaaatgtctcctggag
gggtatcaggtcacctgaacctcttggaaagttcataaaagcttaggctt
gcaaaaggccaagaggctgaaaatgtgctcaaagattaagacacttgttc
ttgcaaagacggttcggttcccagtttcattattagtaacatccattcca
gggtctatgccctctctacttatgcagcattcatgcaccagtaacagatg
tgtacagcagaacccaacataaataaagtaatatcttttgagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24405871_24406816
seq2: B6Ng01-035K12.b_47_974

seq1  GAATTCTCTGTTACTTCCCAGAAGCCACCTGGCCCTTATCTCTGCCGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTACTTCCCAGAAGCCACCTGGCCCTTATCTCTGCCGAGC  50

seq1  AGCCTGACCACAGCATCCTGATACCTATTTTTAAAAATTTACTTAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACCACAGCATCCTGATACCTATTTTTAAAAATTTACTTAATTTT  100

seq1  TTTTACGTGTAGGAATGGTCTGCCTGCATATATATATATATCTGTGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGTGTAGGAATGGTCTGCCTGCATATATATATATATCTGTGCACC  150

seq1  ATGTGTGTTCAGTGCCTACAGAGGCAGAAGAGGGTATATGGCCCTCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTCAGTGCCTACAGAGGCAGAAGAGGGTATATGGCCCTCTGGA  200

seq1  ACTGGGTTCACAGATGGTTGTGAGCCACCATGTGGATGCTGGGAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTCACAGATGGTTGTGAGCCACCATGTGGATGCTGGGAAATGAA  250

seq1  CCCAGGTCCTCTCTGAGAGCAGTAAGTGTCCTTAACCACTGAGCCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCTCTCTGAGAGCAGTAAGTGTCCTTAACCACTGAGCCATCTC  300

seq1  TCCAGCTGTACACTCTGATACCGTAAGGACCAGAAGTCCCCTCATAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTACACTCTGATACCGTAAGGACCAGAAGTCCCCTCATAAAGA  350

seq1  TTTTTCTTTCAACAGTTATTTTTGCTCACAGTAGTTCTTTTCCCCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCAACAGTTATTTTTGCTCACAGTAGTTCTTTTCCCCTGATG  400

seq1  CTTTTCTGCACAACAAAAACCACCATAAAAAAAAATCCCAAAAACCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGCACAACAAAAACCACCATAAAAAAAAATCCCAAAAACCCAAA  450

seq1  CTCTCCTTTAGGCGGGGTTGCTCTCATTTCTCTTGGGGGCAGCCCAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTAGGCGGGGTTGCTCTCATTTCTCTTGGGGGCAGCCCAGTAG  500

seq1  TTCATGCCTAAAATAAAGAACTTTGTCCTCAACGTAGCTCTGGTGGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCCTAAAATAAAGAACTTTGTCCTCAACGTAGCTCTGGTGGTCTC  550

seq1  ACTCTCTCACCAGCCCTTACACCCTCCTTTTCCTTTGCTCCATTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCACCAGCCCTTACACCCTCCTTTTCCTTTGCTCCATTTTCTTT  600

seq1  CTTCCAGAGTTCATGGAGGGGAGACATAATATCTGAAGCCATGGCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGAGTTCATGGAGGGGAGACATAATATCTGAAGCCATGGCAGCCA  650

seq1  TCTTGTGACGATGGGGCAACACAATAGCAAAAAATTAAAAGGTGAGAGAG  700
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TCTTGTGACGATGGGGCAACACAATAGC-AAAAATTTAAAGGTGAGAGAG  699

seq1  AGCAGAATGGAGTGATGGGAACACCCTGGATCTTTGAGGATGTCAGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATGGAGTGATGGGAACACCCTGGATCTTTGAGGATGTCAGCAGG  749

seq1  CTGACCTCTATCTTTAGACTTCATCAAGTAAGTGACTAATGTAAATTGAG  800
      ||||||||||||||||||||||||| ||||   |||| ||||||||||  
seq2  CTGACCTCTATCTTTAGACTTCATC-AGTAGTGGACT-ATGTAAATTGGA  797

seq1  CCAGAGTC-TCTCAATGCCACCTTGAGTGTAATGACATTCTCCGAACATG  849
       ||||||| ||||||||||||||||||||| |||||||||||   |||||
seq2  GCAGAGTCTTCTCAATGCCACCTTGAGTGT-ATGACATTCTC--GACATG  844

seq1  AGGTTTGTACTGTCCTTTGGGGCCTAGAGGAGAGTGACTCTTGACACCAT  899
      ||| ||||||||| |||||||| ||||||||||||||||| ||| | |||
seq2  AGG-TTGTACTGT-CTTTGGGG-CTAGAGGAGAGTGACTC-TGA-AACAT  889

seq1  CGGTGAATGACCCCGAGGACTTTAGCTGTCTTGGACTTCCCACTACC  946
      ||||| ||||  |||| ||||||||||||||  |||||  |||||||
seq2  CGGTG-ATGA--CCGA-GACTTTAGCTGTCT--GACTT--CACTACC  928

seq1: chr19_24457423_24458404
seq2: B6Ng01-035K12.g_67_1012 (reverse)

seq1  AAAACCTCAAAAGATATATTTACTTTTATTTTATGTGTATGGGTTTTCTT  50
       ||| |||||||||||   |||||||   |||||||   ||||||    |
seq2  -AAAACTCAAAAGATA---TTACTTT--ATTTATGT---TGGGTT---CT  38

seq1  GCTTGTACACATCTGTGTACTGTGTGCATGAAATGGCTGCATAAGTCAGA  100
      || ||||||||||||| ||||| |||||||||   ||||||||||| || 
seq2  GC-TGTACACATCTGT-TACTG-GTGCATGAA--TGCTGCATAAGT-AG-  81

seq1  AGAGGGCACTAGATCCCTGGGAACTGGATGGTTACCTAATGAGTGGACAC  150
      |||||||| |||| ||||||  | ||||| |||| ||||| |   || ||
seq2  AGAGGGCA-TAGA-CCCTGG--AATGGAT-GTTA-CTAATAA--TGAAAC  123

seq1  TGGGAACCGAACCCGGTCCTCTGCAAGAACAAGTGCTCTTAATCTTTGAG  200
      |||||||||||||  || || |||||||||||||| ||||||||||||||
seq2  TGGGAACCGAACC--GT-CTTTGCAAGAACAAGTG-TCTTAATCTTTGAG  169

seq1  CCACATCTTCAGCCTCCTTGGCCTTTCTGCAAGCCTAAGCTTTCTATGAG  250
       ||||| |||||||| |||||||||| |||||||||||||||| ||||| 
seq2  -CACATTTTCAGCCT-CTTGGCCTTT-TGCAAGCCTAAGCTTT-TATGAA  215

seq1  CTTTACAAGGAGGCTCCAGGTGAACCTGATACCCCTCCAGGAGACATTTA  300
      |||| ||| |||| | |||||| |||||||||||||||||||||||||| 
seq2  CTTTCCAA-GAGG-TTCAGGTG-ACCTGATACCCCTCCAGGAGACATTT-  261

seq1  CTTATGTTTATAATTCCATGATGGGAAAGATGCATCCTTCCTCCATGT-C  349
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CTTATGTTTATAATTCCATGATGGGAAAGAAGCATCCTTCCTCCATGTCC  311

seq1  CAGTG-CCATATGACAGAATCAGGGGTCA-CCCCGTCAGCCTTGTGAGAT  397
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTGCCCATATGACAGAATCAGGGGTCACCCCCGTCAGCCTTGTGAGAT  361

seq1  CGTTAAACAGGAATGCAGCAGAAGGTGCTATGTTTACAGCAAGCCTGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAAACAGGAATGCAGCAGAAGGTGCTATGTTTACAGCAAGCCTGTGA  411

seq1  AGGCCCAGCTGAAGGTCAAGGGTCCATGCGTATGCACCACTTCAACACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGCTGAAGGTCAAGGGTCCATGCGTATGCACCACTTCAACACAA  461

seq1  CCCCTCTGTCTTCTCTCTCCTCTGCTCTCCCAGGAGATACTGCCAACTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGTCTTCTCTCTCCTCTGCTCTCCCAGGAGATACTGCCAACTGT  511

seq1  CACTGCTTCAACAGAGGATGATGTGACATCTGCAGCTCAGAGCTCCAGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTCAACAGAGGATGATGTGACATCTGCAGCTCAGAGCTCCAGGG  561

seq1  CTCCAAATGTGTCTAACATTGTAACTGACATCTCTACTTGGTTATAACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATGTGTCTAACATTGTAACTGACATCTCTACTTGGTTATAACTC  611

seq1  AATGCTTTATAGGTTGACAAGCATGCAATCAAATTTATTCCAAGGCTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTATAGGTTGACAAGCATGCAATCAAATTTATTCCAAGGCTATG  661

seq1  ATTAAATTATATGGCTTTGCTGGGCGTGATGGCACATGCCTTTAATCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTATATGGCTTTGCTGGGCGTGATGGCACATGCCTTTAATCCCA  711

seq1  GAAGAGAGAGGTGGACCTCTGCGACTTCAAGGCAAGCTTGGTCTACATAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAGGTGGACCTCTGCGACTTCAAGGCAAGCTTGGTCTACATAG  761

seq1  TGAGTTCTACTAAATTGAAAGACTATGTTTCAAAAACAACAACAACAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTACTAAATTGAAAGACTATGTTTCAAAAACAACAACAACAAAA  811

seq1  CCAAGCAAGCAACAAACAAATTATCTGGTTTTTGTTGTTGTTGTAATGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAGCAACAAACAAATTATCTGGTTTTTGTTGTTGTTGTAATGAG  861

seq1  AAGTTTTTTTTGTTTTTGTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTGTTTTTGTTTTTTTTGTTTTTTTTTTTTTGTTTTTTTTT  911

seq1  TTTTTTTTAACCATGGCAGATCCAGCCATGAATTC  982
      |||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAACCATGGCAGATCCAGCCATGAATTC  946