BAC Information

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BAC

Clone NameB6Ng01-035K22
Chromosome19 (Build37)
Map Location 21,513,462 - 21,690,044
singlet/doubletdoublet
Overlap geneGda, LOC100041633, 1110059E24Rik
Upstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5
Downstream gene5730446C15Rik, Tmem2, EG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K22.bB6Ng01-035K22.g
ACCDH864085DH864086
length9651,084
definitionDH864085|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K22, 5' end.DH864086|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,689,067 - 21,690,044)(21,513,462 - 21,514,597)
sequence
gaattcccagatagctagagctacacagagatctcgtctcaaaaaagaag
gaagaaaaaaacaatacttaatgtggcttttttttttttttttttttttg
catacttaggtgtttcttgatattgtttaaaaggcctcagagaaggtcaa
tggtaagttaagctgcttgggcttttttcactctgttactttcttagact
tgtggttttcctgctgctattgctgagtctccttttacatagagtcattc
gtgtcttgattatttgttcagtgcttttcctgcttcctagcatctttcct
ttaaaaaaaaaaagcctttcagctaatggtgaaatggcacaatggtgaag
tgtgtgcttggtgtgctgacaccctggattctatccccataaaaccagca
aaccctcactgataaaaagactgtagaatcttatgctaagtcacctaact
tggtagcagaaaggtatgctgttacaagggtgcttagagcatacaagttt
agatttctatgtatgaataactattttccaggtagtagttaaaactagct
gtgcaataaaccatatattgttagttaataagccgaacacaagatgtgtg
gtttagagcatttcctacaaggcgtacggagtgtgtaaggtttcagccct
gtgcactgctgctgcccatgctccttcccctggcagcttgtgtccagagc
agtttgaatgccgctttttagcagacttttacattgtaacaatgcagtca
cttaactagatttcttctatgtccattacttgaatctactcctggaagtc
tgctgtgtcctttgtgcttgcttctctttgatacaaacacgccactgtga
aagattccctagcagattttactagtgcccaggagaaaggggtgctcttc
atggtctctgcgatcactgttttttcagggagatgaggctaatagactca
gccatcactcaaagc
gaattccctgagggcaccaaaagatcaatatggggtatgtccaatatgtt
cagaaactacaaacatactagtggacaaccagctcaactctagggaaaca
agtggaaggaatccagaccaaagataagcacacattgtaagtcatggtca
gccttcggggtttattttttaagaaatctctaaaaagctgcaggaaaata
tggttgatgcattcttcctggttcagtggcttccttacctctagactttc
agggtttgggatgccatttgcttgattgttcattcaagagcctggcaagg
cccacaggccttcctccttacaggccatggtctcgttctaggcaagctgt
caaatgcatacacggatctctaaaaccaaggtttcctgaaaccatagcaa
gttccagccagcagaggctctctcagccaaacccttagttgtccagatga
gcaacttgattcccttctgttaagtaaacaagtccaaatgtttctcgtgt
gaaatgagggctatgtaggataagcactaatgatgtcagaaagacttaag
ctgaaggcagataaataataaatatcagtttatgacacaagtccctgcaa
gatacaggctccaaacaccagatggaaaatttgggcaaaggcttgtggcc
atgacctagaataacttctggataattgtgaatagctcagctatgcaaca
aaaggaggtagcatgtgtctgtactcatcccaaaatcctactcaagtcac
tgtgataggaccagatgaaagatattatacttcagagactgctaaacact
tggcaaagacaaacattgtaatattcatgtaattcgggtcaactgattaa
tgaagagtagatatggtttaaaaacaaaagtcagctatctagcagagtga
gtgaaatacacgacgcacagaatacatgaaggctagattttgatctatat
tcttttgtaataagaagcagaccacagctggtgatattccaggtgcgaac
aaacgagtattgcttggctaatatctgctaggatgttcagagttgatgct
gtctggcatgaactaggaattaaaaacagaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21689067_21690044
seq2: B6Ng01-035K22.b_43_1007 (reverse)

seq1  GCTTTGGTGTGATGGCCTTGAGTCCTATTTAGCCCTCATCTCCCTTGATA  50
      ||||| | ||||||||  ||||| ||| |||| ||||||||||| ||| |
seq2  GCTTT-GAGTGATGGC--TGAGT-CTA-TTAG-CCTCATCTCCC-TGAAA  43

seq1  TAACAGTTGATCGCATGAGACCCATGAGGGGCACCCCTTTCTTCCTGGGC  100
       ||||| |||||||| |||| |||||| | ||||||||||| ||||||||
seq2  AAACAG-TGATCGCA-GAGA-CCATGAAGAGCACCCCTTTC-TCCTGGGC  89

seq1  ACTAGTAAAATCTGCTAGTG-ATCTTTCACAGTGGCGTGTTTGTATCAAA  149
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  ACTAGTAAAATCTGCTAGGGAATCTTTCACAGTGGCGTGTTTGTATCAAA  139

seq1  GAGAAGCAAGCACAAAGGACACAGCAGACTACCAGGAGTAGAATTCAAGT  199
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  GAGAAGCAAGCACAAAGGACACAGCAGACTTCCAGGAGTAG-ATTCAAGT  188

seq1  AATGGACATAGAAGAAATCTAGTTAAGTGACTGCATTTGTTACAATGTAA  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGGACATAGAAGAAATCTAGTTAAGTGACTGCA-TTGTTACAATGTAA  237

seq1  AAGTCTGCTAAAAAGCGGCATTCAAACTGCTCTGGGACACAAGCTGCCAG  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTCTGCTAAAAAGCGGCATTCAAACTGCTCT-GGACACAAGCTGCCAG  286

seq1  GGGAAGGAGCATGGGCAGCAGCAGTGCACAGTGCTGAAACCTTACACACT  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGAAGGAGCATGGGCAGCAGCAGTGCACAGGGCTGAAACCTTACACACT  336

seq1  CCGTACGCCTTGTAGGAAATGCTCTAAACCACACATCTTGTGTTCGGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACGCCTTGTAGGAAATGCTCTAAACCACACATCTTGTGTTCGGCTT  386

seq1  ATTAACTAACAATATATGGTTTATTGCACAGCTAGTTTTAACTACTACCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAACAATATATGGTTTATTGCACAGCTAGTTTTAACTACTACCT  436

seq1  GGAAAATAGTTATTCATACATAGAAATCTAAACTTGTATGCTCTAAGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGTTATTCATACATAGAAATCTAAACTTGTATGCTCTAAGCAC  486

seq1  CCTTGTAACAGCATACCTTTCTGCTACCAAGTTAGGTGACTTAGCATAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAACAGCATACCTTTCTGCTACCAAGTTAGGTGACTTAGCATAAG  536

seq1  ATTCTACAGTCTTTTTATCAGTGAGGGTTTGCTGGTTTTATGGGGATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAGTCTTTTTATCAGTGAGGGTTTGCTGGTTTTATGGGGATAGA  586

seq1  ATCCAGGGTGTCAGCACACCAAGCACACACTTCACCATTGTGCCATTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGTGTCAGCACACCAAGCACACACTTCACCATTGTGCCATTTCA  636

seq1  CCATTAGCTGAAAGGCTTTTTTTTTTTAAAGGAAAGATGCTAGGAAGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGCTGAAAGGCTTTTTTTTTTTAAAGGAAAGATGCTAGGAAGCAG  686

seq1  GAAAAGCACTGAACAAATAATCAAGACACGAATGACTCTATGTAAAAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCACTGAACAAATAATCAAGACACGAATGACTCTATGTAAAAGGA  736

seq1  GACTCAGCAATAGCAGCAGGAAAACCACAAGTCTAAGAAAGTAACAGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCAATAGCAGCAGGAAAACCACAAGTCTAAGAAAGTAACAGAGT  786

seq1  GAAAAAAGCCCAAGCAGCTTAACTTACCATTGACCTTCTCTGAGGCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGCCCAAGCAGCTTAACTTACCATTGACCTTCTCTGAGGCCTTT  836

seq1  TAAACAATATCAAGAAACACCTAAGTATGCAAAAAAAAAAAAAAAAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATATCAAGAAACACCTAAGTATGCAAAAAAAAAAAAAAAAAAAA  886

seq1  AAGCCACATTAAGTATTGTTTTTTTCTTCCTTCTTTTTTGAGACGAGATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACATTAAGTATTGTTTTTTTCTTCCTTCTTTTTTGAGACGAGATC  936

seq1  TCTGTGTAGCTCTAGCTATCTGGGAATTC  978
      |||||||||||||||||||||||||||||
seq2  TCTGTGTAGCTCTAGCTATCTGGGAATTC  965

seq1: chr19_21513462_21514597
seq2: B6Ng01-035K22.g_67_1150

seq1  GAATTCCCTGAGGGCACCAAAAGATCAATATGGGGTATGTCCAATATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGGGCACCAAAAGATCAATATGGGGTATGTCCAATATGTT  50

seq1  CAGAAACTACAAACATACTAGTGGACAACCAGCTCAACTCTAGGGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTACAAACATACTAGTGGACAACCAGCTCAACTCTAGGGAAACA  100

seq1  AGTGGAAGGAATCCAGACCAAAGATAAGCACACATTGTAAGTCATGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGGAATCCAGACCAAAGATAAGCACACATTGTAAGTCATGGTCA  150

seq1  GCCTTCGGGGTTTATTTTTTAAGAAATCTCTAAAAAGCTGCAGGAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGGGTTTATTTTTTAAGAAATCTCTAAAAAGCTGCAGGAAAATA  200

seq1  TGGTTGATGCATTCTTCCTGGTTCAGTGGCTTCCTTACCTCTAGACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATGCATTCTTCCTGGTTCAGTGGCTTCCTTACCTCTAGACTTTC  250

seq1  AGGGTTTGGGATGCCATTTGCTTGATTGTTCATTCAAGAGCCTGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGGGATGCCATTTGCTTGATTGTTCATTCAAGAGCCTGGCAAGG  300

seq1  CCCACAGGCCTTCCTCCTTACAGGCCATGGTCTCGTTCTAGGCAAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCCTTCCTCCTTACAGGCCATGGTCTCGTTCTAGGCAAGCTGT  350

seq1  CAAATGCATACACGGATCTCTAAAACCAAGGTTTCCTGAAACCATAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCATACACGGATCTCTAAAACCAAGGTTTCCTGAAACCATAGCAA  400

seq1  GTTCCAGCCAGCAGAGGCTCTCTCAGCCAAACCCTTAGTTGTCCAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCCAGCAGAGGCTCTCTCAGCCAAACCCTTAGTTGTCCAGATGA  450

seq1  GCAACTTGATTCCCTTCTGTTAAGTAAACAAGTCCAAATGTTTCTCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGATTCCCTTCTGTTAAGTAAACAAGTCCAAATGTTTCTCGTGT  500

seq1  GAAATGAGGGCTATGTAGGATAAGCACTAATGATGTCAGAAAGACTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGGCTATGTAGGATAAGCACTAATGATGTCAGAAAGACTTAAG  550

seq1  CTGAAGGCAGATAAATAATAAATATCAGTTTATGACACAAGTCCCTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCAGATAAATAATAAATATCAGTTTATGACACAAGTCCCTGCAA  600

seq1  GATACAGGCTCCAAACACCAGATGGAAAATTTGGGCAAAAGGCTTGTGGC  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATACAGGCTCCAAACACCAGATGGAAAATTTGGGC-AAAGGCTTGTGGC  649

seq1  CATGACCTAGAATAACTTCTGGATAATTGTGAAATAGCTCAGCTATGCAA  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATGACCTAGAATAACTTCTGGATAATTGTG-AATAGCTCAGCTATGCAA  698

seq1  CAAAAGGAGGTAGCATGTGTCTGTACTCATCCCAAAATCCTACTCAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAGGTAGCATGTGTCTGTACTCATCCCAAAATCCTACTCAAGTC  748

seq1  ACTGTGATAGGACCAGATGAAAGATATTATACTTCAGAGACTGCTAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTGTGATAGGACCAGATGAAAGATATTATACTTCAGAGACTGCT-AAAC  797

seq1  ACTTGGCAAAGACAAACATTGGTATATTCATGTAATTCGGGTCAAACTGA  850
      |||||||||||||||||||||  |||||||||||||||||||| ||||||
seq2  ACTTGGCAAAGACAAACATTGTAATATTCATGTAATTCGGGTC-AACTGA  846

seq1  TTAATGAAAGAGTAAGATATGGTTTAAAAAACAAAAGTCAGCCTATCTAG  900
      |||||| |||||| ||||||||||| ||||||||||||||| ||||||| 
seq2  TTAATG-AAGAGT-AGATATGGTTT-AAAAACAAAAGTCAG-CTATCTA-  891

seq1  GCAGAGTGAAGTGAAAATTACCACGACGGCACCAAAGAATACCATGAAGG  950
      |||||||| |||||||  || |||||||    || |||||| ||||||||
seq2  GCAGAGTG-AGTGAAA--TA-CACGACG----CACAGAATA-CATGAAGG  932

seq1  GCTTAGATTTTCTGATCTAATATTCTTTTTGTAAATAAGAGAGCAGACCA  1000
         |||||||  |||||| |||||| |||||| ||||||| |||||||||
seq2  --CTAGATTT--TGATCT-ATATTC-TTTTGT-AATAAGA-AGCAGACCA  974

seq1  CCAGGCTGTGTGATCATCCCAGGTGCAGAACAAACAGGAGTATTTGCTGG  1050
      |   |||| ||||| || |||||||| ||||||||  ||||| ||||| |
seq2  C--AGCTG-GTGAT-ATTCCAGGTGC-GAACAAAC--GAGTA-TTGCTTG  1016

seq1  GCTAAATCATCTGCCTAGAGATTGTTCCAGGCAGTTGATTGCTTGTCTGG  1100
      |||||   ||||| |||| || |||| |||  |||||| ||| |||||||
seq2  GCTAA--TATCTG-CTAG-GA-TGTT-CAG--AGTTGA-TGC-TGTCTGG  1056

seq1  CAATAGAAACTAGAGGTGATTTAAAAAACAGAAAGG  1136
      |   |  ||||||    || || |||||||||||||
seq2  C---ATGAACTAG----GAATT-AAAAACAGAAAGG  1084