BAC Information

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BAC

Clone NameB6Ng01-036N01
Chromosome19 (Build37)
Map Location 15,228,789 - 15,394,064
singlet/doubletdoublet
Overlap geneEG635497
Upstream geneEG667433, Tle4, EG433225
Downstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N01.bB6Ng01-036N01.g
ACCDH864872DH864873
length1,051751
definitionDH864872|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N01, 5' end.DH864873|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,228,789 - 15,229,851)(15,393,316 - 15,394,064)
sequence
gaattcagatagctcttggatgggtaggtgcacgtgtgcaacccatccgg
agcacagagcagttaacaaacctctacacccagctggtagaattattatt
tgggaaggattaagaaggatggctttgttggtggtgtgtcaatggggcag
gcttggagatttcaaagaatcaagctatttcacactagttatctctgttt
cctgggtgctgttcgaagtgtgagctttccagattatatgaatttcctat
caataaaaaaagaaaacacaacagtgttttattcttcaagaacaaataaa
aaatgacattcccatcagaacaatggtaaaatatggtaataatcttctaa
aaaattgggtggaagctatcatatttatgcagtgtttttcacaggtagat
ctgtccaacagacctactgtcagcagctggatttcttctcttcaaatgtc
actgtaaggaacttggaagttgttcatcccagccgggatttttaagatct
tttctggagttcttcccatactgaggcaaaggctgagttaatactgaggg
aaagagaaaacattcccagacttacagttctaaagaaaagcctctttcca
gagtatatgaaattttcagacatgtgtaacatttgagaattcctcagtgg
cagaagcagcgcttgtgggaagtggtgggctgggacatgacacatctccc
aagggaaaaggatgctgttttcccagcagtgatctccattatccttggtc
cagctgatttcttccagtcataacaaattaagaatgctttagaggcagca
gtgcccgcaagtgatctatctccgaagtacatacctcttccttctactaa
accttcctaaatgtcttatttttataagataatttaccccttttgtgaga
aagaattctgagttaggaaacctgtctgctccctgctttctggaggaact
catctggggatttttttcatttactcggaagataaactttggaactgatt
cctgatgtttatgtcatgctggagaaagtttaacgacagaagtctctctt
a
gaattctcaacagaggactcttaaatggtcaataagcacttaaagaaaag
gggaaaaaaagaggaattttatggggagatacagaaagaagacataaaag
tgagaaaagaggaaaaaattacctcatagtcagaaaagcatgtgaaaaaa
ttcataagtttaaaataaagtaccaagggattttttgaagtataaaaaaa
caatttcaaaatactatttaaacatatagtaaaatgaaaaaagaacatga
gatgtatacaaagaaaaaaaatagacgaaataaaaaatgaataaatgaaa
ttagattaatatcaagtgtggataaaaacataaacacagccaggtgtggt
ggtgcacgtctttaattccagcacttgggaggcagaggcaggcggatttc
tgggttcaaggccagcctggtctacaaagtgagttccaggacagccaagg
ctatacagagaaatcctgtctcaaaaaaacaaaaacaaaaacaaaaaaac
acgagcatttttaagtgcccactactgcactcagtagagaatctgcctgc
tctgcaagtctaagatcaaccccagaatgcacagggagaactgaggtcac
atagctgttctctggcctctcgcatacttctggtatgtgtacttccacca
cacacatcatccctcatttctcctcatctgtctcccctcattgtctctct
gtctctgtggcccgttcagcaaatttaaattttgtaagtgtctttttttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15228789_15229851
seq2: B6Ng01-036N01.b_43_1093

seq1  GAATTCAGATAGCTCTTGGATGGGTAGGTGCACGTGTGCAACCCATCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAGCTCTTGGATGGGTAGGTGCACGTGTGCAACCCATCCGG  50

seq1  AGCACAGAGCAGTTAACAAACCTCTACACCCAGCTGGTAGAATTATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGCAGTTAACAAACCTCTACACCCAGCTGGTAGAATTATTATT  100

seq1  TGGGAAGGATTAAGAAGGATGGCTTTGTTGGTGGTGTGTCAATGGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGATTAAGAAGGATGGCTTTGTTGGTGGTGTGTCAATGGGGCAG  150

seq1  GCTTGGAGATTTCAAAGAATCAAGCTATTTCACACTAGTTATCTCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGATTTCAAAGAATCAAGCTATTTCACACTAGTTATCTCTGTTT  200

seq1  CCTGGGTGCTGTTCGAAGTGTGAGCTTTCCAGATTATATGAATTTCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGCTGTTCGAAGTGTGAGCTTTCCAGATTATATGAATTTCCTAT  250

seq1  CAATAAAAAAAGAAAACACAACAGTGTTTTATTCTTCAAGAACAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAAAGAAAACACAACAGTGTTTTATTCTTCAAGAACAAATAAA  300

seq1  AAATGACATTCCCATCAGAACAATGGTAAAATATGGTAATAATCTTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACATTCCCATCAGAACAATGGTAAAATATGGTAATAATCTTCTAA  350

seq1  AAAATTGGGTGGAAGCTATCATATTTATGCAGTGTTTTTCACAGGTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGGTGGAAGCTATCATATTTATGCAGTGTTTTTCACAGGTAGAT  400

seq1  CTGTCCAACAGACCTACTGTCAGCAGCTGGATTTCTTCTCTTCAAATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAACAGACCTACTGTCAGCAGCTGGATTTCTTCTCTTCAAATGTC  450

seq1  ACTGTAAGGAACTTGGAAGTTGTTCATCCCAGCCGGGATTTTTAAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGGAACTTGGAAGTTGTTCATCCCAGCCGGGATTTTTAAGATCT  500

seq1  TTTCTGGAGTTCTTCCCATACTGAGGCAAAGGCTGAGTTAATACTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGTTCTTCCCATACTGAGGCAAAGGCTGAGTTAATACTGAGGG  550

seq1  AAAGAG-AAACATTCCCAGACTTACAGTTCTAAAG-AAAGCCTCTTTCCA  598
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGAGAAAACATTCCCAGACTTACAGTTCTAAAGAAAAGCCTCTTTCCA  600

seq1  GAGTATATGAAA-TTTCAGACATGTGTAACA-TTGAGAATTCCTCAGTGG  646
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  GAGTATATGAAATTTTCAGACATGTGTAACATTTGAGAATTCCTCAGTGG  650

seq1  CAGAAGCAGCGCTTGTGGGAAGTGGT-GGCTGGGACATGACACATCCTCC  695
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CAGAAGCAGCGCTTGTGGGAAGTGGTGGGCTGGGACATGACACAT-CTCC  699

seq1  CAAGGGAAAAGGATGCTGTTTTCCCCAGCAGTGATCTCCATTAGTCCTTG  745
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  CAAGGGAAAAGGATGCTGTTTT-CCCAGCAGTGATCTCCATTA-TCCTTG  747

seq1  GTCCAGCTGATTTCTCCCAGTCATAACAAATTAAG-ATGCTTTAGAGGCA  794
      ||||||||||||||| ||||||||||||||||||| ||||||||||||| 
seq2  GTCCAGCTGATTTCTTCCAGTCATAACAAATTAAGAATGCTTTAGAGGC-  796

seq1  AGCAGTGCCCGCAAGTGATCTATCTCCG-AGTACATACCATCTTCCTTCT  843
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  AGCAGTGCCCGCAAGTGATCTATCTCCGAAGTACATACC-TCTTCCTTCT  845

seq1  ACTAAACCTCCCTAAATGTCATATTTTTCATAAGATAATTATACGCTTTT  893
      ||||||||| |||||||||| ||||||| ||||||||||| ||| | |||
seq2  ACTAAACCTTCCTAAATGTCTTATTTTT-ATAAGATAATT-TACCCCTTT  893

seq1  GTTGAGAAAG-ATTCTGAGTTAGGAAACCCTGCTGCTCCCCTGCTTTCTG  942
        |||||||| ||||||||||||||||||   ||||| ||||||||||||
seq2  TGTGAGAAAGAATTCTGAGTTAGGAAACCTGTCTGCT-CCCTGCTTTCTG  942

seq1  CAGGAACTCATTCTGGGGATATTTTTCTTTTACTCCGGAAGATAAAACTT  992
       ||||||||| ||||||||| |||||| |||||| |||||||| ||||||
seq2  GAGGAACTCA-TCTGGGGATTTTTTTCATTTACT-CGGAAGAT-AAACTT  989

seq1  TGGAAACTTGATTTCACTGGATGTTTATTGTCATGTCTGAGAAAGTTTAA  1042
      |||||   |||||   |  |||||||| |||||||   ||||||||||||
seq2  TGGAA--CTGATT---CCTGATGTTTA-TGTCATGCTGGAGAAAGTTTAA  1033

seq1  GCGACCAGAAGTTCTCTCTTA  1063
       ||| |||||| |||||||||
seq2  -CGA-CAGAAG-TCTCTCTTA  1051

seq1: chr19_15393316_15394064
seq2: B6Ng01-036N01.g_67_817 (reverse)

seq1  --AAAAAAAAAC-TTTACAAAATTTAAATTTGCTGGACGGGGCACAGAGA  47
        ||||||| ||  ||||||||||||||||||||| ||||| ||||||||
seq2  AAAAAAAAAGACACTTACAAAATTTAAATTTGCTGAACGGGCCACAGAGA  50

seq1  CAGAGAGACAATGA-GAGAGACAGATGGAGAGAAATGAGGGATGATGTGT  96
      |||||||||||||| | ||||||||||  |||||||||||||||||||||
seq2  CAGAGAGACAATGAGGGGAGACAGATGAGGAGAAATGAGGGATGATGTGT  100

seq1  GTGGTGGAAGTACACATACCAGGAAGTATGCGAGGAGGCCAGAGAACAGC  146
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  GTGGTGGAAGTACACATACCA-GAAGTATGCGA-GAGGCCAGAGAACAGC  148

seq1  TATGTGACCTCAGTTCTCCCTGTGCATTCTGGGGTTGATCTTAGACTTGC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCTCAGTTCTCCCTGTGCATTCTGGGGTTGATCTTAGACTTGC  198

seq1  AGAGCAGGCAGATTCTCTACTGAGTGCAGTAGTGGGCACTTAAAAATGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCAGATTCTCTACTGAGTGCAGTAGTGGGCACTTAAAAATGCT  248

seq1  CGTGTTTTTTTGTTTTTGTTTTTGTTTTTTTGAGACAGGATTTCTCTGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTTTTGTTTTTGTTTTTGTTTTTTTGAGACAGGATTTCTCTGTA  298

seq1  TAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  348

seq1  CCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGACGTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGACGTGC  398

seq1  ACCACCACACCTGGCTGTGTTTATGTTTTTATCCACACTTGATATTAATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACACCTGGCTGTGTTTATGTTTTTATCCACACTTGATATTAATC  448

seq1  TAATTTCATTTATTCATTTTTTATTTCGTCTATTTTTTTTCTTTGTATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATTTATTCATTTTTTATTTCGTCTATTTTTTTTCTTTGTATAC  498

seq1  ATCTCATGTTCTTTTTTCATTTTACTATATGTTTAAATAGTATTTTGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGTTCTTTTTTCATTTTACTATATGTTTAAATAGTATTTTGAAA  548

seq1  TTGTTTTTTTATACTTCAAAAAATCCCTTGGTACTTTATTTTAAACTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTATACTTCAAAAAATCCCTTGGTACTTTATTTTAAACTTAT  598

seq1  GAATTTTTTCACATGCTTTTCTGACTATGAGGTAATTTTTTCCTCTTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTCACATGCTTTTCTGACTATGAGGTAATTTTTTCCTCTTTTC  648

seq1  TCACTTTTATGTCTTCTTTCTGTATCTCCCCATAAAATTCCTCTTTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTATGTCTTCTTTCTGTATCTCCCCATAAAATTCCTCTTTTTTT  698

seq1  CCCCTTTTCTTTAAGTGCTTATTGACCATTTAAGAGTCCTCTGTTGAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTCTTTAAGTGCTTATTGACCATTTAAGAGTCCTCTGTTGAGAA  748

seq1  TTC  749
      |||
seq2  TTC  751