BAC Information

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BAC

Clone NameB6Ng01-037P19
Chromosome19 (Build37)
Map Location 24,578,573 - 24,697,086
singlet/doubletdoublet
Overlap genePip5k1b
Upstream gene1700028P14Rik, LOC670565, LOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, LOC100042457, 2900009I07Rik
Downstream geneE030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037P19.bB6Ng01-037P19.g
ACCDH865689DH865690
length1,086976
definitionDH865689|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P19, 5' end.DH865690|Mus musculus domesticus DNA, BAC clone: B6Ng01-037P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,578,573 - 24,579,673)(24,696,107 - 24,697,086)
sequence
gaattcagtgctcaattaacagggcatttcaaatcaatgcaaaaagaaag
atttctgactcatgttggttgactgcccacttattttgaaaaagatcaag
tcagaacccacaagtctaaacattttaccttctttaatctcttatttttt
tataaacattttccacaatgaaaaaaagttggtctctgatctctcacaaa
aaataatttttgtttgtttgtttggttggttggttattttttctttttca
tgacagggtttctctgtgtatccctggctgttctggaactcactctgtgg
accaggcagatcttgaactcacagagatctgcctcttgatttcccgcttg
agtgctcggagtaaaggtgtgtgccacaaccacctggcctaaaggactct
ttggttttttttttcccccctcaggtttttgttgttgttgttttgttttg
gttttgacaaaataaaaatttaaagtaaataacattttcccataattttc
tacttagagcatgaaaaattcaaccacaaaaaggacccagcaaaatttaa
ggtagtatttacaaagcagcagaatgggaaaagacctatctggtcatggt
aaaggccaaattcataggaaaaatatacctgacaggtctataaatctcta
ggaaaaaaaacaaagaacaataagaggtgaacaaggagaaggaagtgtct
gtgacatataacagaaagggcattgataactacagtcaacatagactctt
gtgagcaaaccaccctctagaatataggcaaatgagataaaacaatttgg
aaaaaaaatcacacaaatggccaaaaatatgcatattgtgcccaaccaaa
gatgtacaattaagacatattacaataaatatcttagaatcaattattta
aaaaaaaatcagcataccaaagattttctaaagtgatcacatgcaacttc
aaacgccccatcttcgggtctactctatgtcagtgtcttcccaggaataa
cagagaagtgcacaaataccttaatgtttattacctgctgcttagtattg
cctccaggatctgtcccaaggaaatgacatgaatat
gaattcagaataaataaagaaataatggcttaagggcactgcagcccttc
cagaggatgggggcatttcccgagcatgtccataataactgtaactccag
ttccagggggtctgacacctcctcctggcctccgtgggcagccgtcacac
acatgtgacacagacattcatgcaggcaaaacacccacacacattaaaat
aaaatagggtttaaataataaatacttaaaacaaatgcctattaattaat
taattataaattaaattaaatattattaaattaataatctatagataaat
catatttatcttataaatttataatgtataaataaacaaaataaattaac
tttaaattaattaaatcaaaaatatttcattaaactaataatgaattatt
atttaaatttggatataaataatatttaaaataaatgaatgataaataat
aaatatctaatattttatatgtgtaggtgttttgcgtgtgtagacacata
tctattattcttttgtttttcaaacgtgacctctcccattcctcaagcct
gttgtggcgtggtggtgcgccctctggtggttcaaggtttaaatagctcc
acctgccccagtagtgactgttctggtagaaaccaatctcaattaaaata
agaaacctcaatttggaggtgtgtcctggatatgccaagtcaggtgattt
ccaggaatttttaaaggttttctggtttgcatgagcgtgtgtgatttgca
tatatgttttcaaggacatattctagccacctgtgccttgggttgatctg
tgtggcttgaaataaagccggttagaggagacagtgtgaagtggacaaaa
tgggtttctggcaagcggcccgtcctggtttttgttgctaaaacccaacc
aaggttactagttaaagcttagttagtacctagtagtaaaacaccaaagt
tgctagttagagtcaggaaaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_24578573_24579673
seq2: B6Ng01-037P19.b_47_1132

seq1  GAATTCAGTGCTCAATTAACAGGGCATTTCAAATCAATGCAAAAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCTCAATTAACAGGGCATTTCAAATCAATGCAAAAAGAAAG  50

seq1  ATTTCTGACTCATGTTGGTTGACTGCCCACTTATTTTGAAAAAGATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGACTCATGTTGGTTGACTGCCCACTTATTTTGAAAAAGATCAAG  100

seq1  TCAGAACCCACAAGTCTAAACATTTTACCTTCTTTAATCTCTTATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCACAAGTCTAAACATTTTACCTTCTTTAATCTCTTATTTTTT  150

seq1  TATAAACATTTTCCACAATGAAAAAAAGTTGGTCTCTGATCTCTCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATTTTCCACAATGAAAAAAAGTTGGTCTCTGATCTCTCACAAA  200

seq1  AAATAATTTTTGTTTGTTTGTTTGGTTGGTTGGTTATTTTTTCTTTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTGTTTGTTTGTTTGGTTGGTTGGTTATTTTTTCTTTTTCA  250

seq1  TGACAGGGTTTCTCTGTGTATCCCTGGCTGTTCTGGAACTCACTCTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTTTCTCTGTGTATCCCTGGCTGTTCTGGAACTCACTCTGTGG  300

seq1  ACCAGGCAGATCTTGAACTCACAGAGATCTGCCTCTTGATTTCCCGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGATCTTGAACTCACAGAGATCTGCCTCTTGATTTCCCGCTTG  350

seq1  AGTGCTCGGAGTAAAGGTGTGTGCCACAACCACCTGGCCTAAAGGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCGGAGTAAAGGTGTGTGCCACAACCACCTGGCCTAAAGGACTCT  400

seq1  TTGGTTTTTTTTTTCCCCCCTCAGGTTTTTGTTGTTGTTGTTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTTTTCCCCCCTCAGGTTTTTGTTGTTGTTGTTTTGTTTTG  450

seq1  GTTTTGACAAAATAAAAATTTAAAGTAAATAACATTTTCCCATAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACAAAATAAAAATTTAAAGTAAATAACATTTTCCCATAATTTTC  500

seq1  TACTTAGAGCATGAAAAATTCAACCACAAAAAGGACCCAGCAAAATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAGCATGAAAAATTCAACCACAAAAAGGACCCAGCAAAATTTAA  550

seq1  GGTAGTATTTACAAAGCAGCAGAATGGGAAAAGACCTATCTGGTCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATTTACAAAGCAGCAGAATGGGAAAAGACCTATCTGGTCATGGT  600

seq1  AAAGGCCAAATTCATAGGAAAAATATACCTGACAGGTCTATAAATCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAAATTCATAGGAAAAATATACCTGACAGGTCTATAAATCTCTA  650

seq1  GGAAAAAAAACAAAGAACAATAAGAGGTGAACAAGGAGAAGGAAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAACAAAGAACAATAAGAGGTGAACAAGGAGAAGGAAGTGTCT  700

seq1  GTGACATATAACAGAAAGGGCATTGATAACTACAGTCAACATAGACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATATAACAGAAAGGGCATTGATAACTACAGTCAACATAGACTCTT  750

seq1  GTGAGCAAACCACCCTCTAGAATATAGGCAAATGAGATAAAACAATTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAACCACCCTCTAGAATATAGGCAAATGAGATAAAACAATTTGG  800

seq1  AAAAAAAATCACACAAATGGCCAAAAATATGCATA-TGTGCCCAAACCAA  849
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  AAAAAAAATCACACAAATGGCCAAAAATATGCATATTGTGCCC-AACCAA  849

seq1  AGAATGTACAATTAAGACATATTACAATAAATATCTTAGGAATCAATTAT  899
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AG-ATGTACAATTAAGACATATTACAATAAATATCTTA-GAATCAATTAT  897

seq1  TTAAAAAAAAATCAGCATACCAAAGATTTTCTAAAAGTGATCACATGCAA  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAAAAAAAAATCAGCATACCAAAGATTTTCT-AAAGTGATCACATGCAA  946

seq1  CTTCCAGAACGCCCCCATC-TCGGGTCTAACTCTATGTCAGTGTCTTCCC  998
      ||||   |||| ||||||| |||||||| |||||||||||||||||||||
seq2  CTTC--AAACG-CCCCATCTTCGGGTCT-ACTCTATGTCAGTGTCTTCCC  992

seq1  AGGGATAAACAGAGAAGTGCACAAATACCATAATGTTTTATAACCCTGCT  1048
      ||| || |||||||||||||||||||||| ||||||||  ||  ||||||
seq2  AGGAAT-AACAGAGAAGTGCACAAATACCTTAATGTTTATTA--CCTGCT  1039

seq1  GGTCTAGTAATTGCCCTTCCAGGAATCTGTCCTAAGGAAATGACCATGAA  1098
      | | |||| ||||||  |||||| |||||||| |||||||||| ||||||
seq2  GCT-TAGT-ATTGCC--TCCAGG-ATCTGTCCCAAGGAAATGA-CATGAA  1083

seq1  TAT  1101
      |||
seq2  TAT  1086

seq1: chr19_24696107_24697086
seq2: B6Ng01-037P19.g_69_1044 (reverse)

seq1  TCTTCCTTTCCTGACTCTAACTAGCAACTTTGGTTGGTTTTACTAACTAG  50
      ||||||||||||||||||||||||||||||||||  |||||||| |||||
seq2  TCTTCCTTTCCTGACTCTAACTAGCAACTTTGGT--GTTTTACT-ACTAG  47

seq1  GTTACTAACT-AGGTTTTACTAGTTACCTTTGGTTGGTGTTTTAGC-ACA  98
      | |||||||| || ||| |||||| ||| |||||||| |||||||| |||
seq2  G-TACTAACTAAGCTTTAACTAGTAACC-TTGGTTGG-GTTTTAGCAACA  94

seq1  AAAA-CAGGACGGGCCGCTTGCCAGAAACCCATTTTGTCCACTTCACACT  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGGACGGGCCGCTTGCCAGAAACCCATTTTGTCCACTTCACACT  144

seq1  GTCTCCTCTAACCGGCTTTATTTCAAGCCACACAGATCAACCCAAGGCAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCTAACCGGCTTTATTTCAAGCCACACAGATCAACCCAAGGCAC  194

seq1  AGGTGGCTAGAATATGTCCTTGAAAACATATATGCAAATCACACACGCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTAGAATATGTCCTTGAAAACATATATGCAAATCACACACGCTC  244

seq1  ATGCAAACCAGAAATACCTTAAAAATTCCTGGAAATCACCCTGACTTGGC  297
      ||||||||||||||  | |||||||||||||||||||| |||||||||||
seq2  ATGCAAACCAGAAAACCTTTAAAAATTCCTGGAAATCA-CCTGACTTGGC  293

seq1  ATATCCAGGACACACCTCCAAATTGAGGTTTCTTATTTTAATTGAGATTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGGACACACCTCCAAATTGAGGTTTCTTATTTTAATTGAGATTG  343

seq1  GTTTCTACCAGAACAGTCACTACTGGGGCAGGTGGAGCTATTTAAACCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCAGAACAGTCACTACTGGGGCAGGTGGAGCTATTTAAACCTT  393

seq1  GAACCACCAGAGGGCGCACCACCACGCCACAACAGGCTTGAGGAATGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACCAGAGGGCGCACCACCACGCCACAACAGGCTTGAGGAATGGGA  443

seq1  GAGGTCACGTTTGAAAAACAAAAGAATAATAGATATGTGTCTACACACGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACGTTTGAAAAACAAAAGAATAATAGATATGTGTCTACACACGC  493

seq1  AAAACACCTACACATATAAAATATTAGATATTTATTATTTATCATTCATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCTACACATATAAAATATTAGATATTTATTATTTATCATTCATT  543

seq1  TATTTTAAATATTATTTATATCCAAATTTAAATAATAATTCATTATTAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATATTATTTATATCCAAATTTAAATAATAATTCATTATTAGT  593

seq1  TTAATGAAATATTTTTGATTTAATTAATTTAAAGTTAATTTATTTTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAAATATTTTTGATTTAATTAATTTAAAGTTAATTTATTTTGTTT  643

seq1  ATTTATACATTATAAATTTATAAGATAAATATGATTTATCTATAGATTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACATTATAAATTTATAAGATAAATATGATTTATCTATAGATTAT  693

seq1  TAATTTAATAATATTTAATTTAATTTATAATTAATTAATTAATAGGCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATAATATTTAATTTAATTTATAATTAATTAATTAATAGGCATT  743

seq1  TGTTTTAAGTATTTATTATTTAAACCCTATTTTATTTTAATGTGTGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGTATTTATTATTTAAACCCTATTTTATTTTAATGTGTGTGGG  793

seq1  TGTTTTGCCTGCATGAATGTCTGTGTCACATGTGTGTGACGGCTGCCCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCTGCATGAATGTCTGTGTCACATGTGTGTGACGGCTGCCCAC  843

seq1  GGAGGCCAGGAGGAGGTGTCAGACCCCCTGGAACTGGAGTTACAGTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGGAGGAGGTGTCAGACCCCCTGGAACTGGAGTTACAGTTATT  893

seq1  ATGGACATGCTCGGGAAATGCCCCCATCCTCTGGAAGGGCTGCAGTGCCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATGCTCGGGAAATGCCCCCATCCTCTGGAAGGGCTGCAGTGCCC  943

seq1  TTAAGCCATTATTTCTTTATTTATTCTGAATTC  980
      |||||||||||||||||||||||||||||||||
seq2  TTAAGCCATTATTTCTTTATTTATTCTGAATTC  976