BAC Information

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BAC

Clone NameB6Ng01-040K08
Chromosome19 (Build37)
Map Location 12,459,829 - 12,596,602
singlet/doubletdoublet
Overlap geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4
Upstream geneMs4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1
Downstream geneEG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040K08.bB6Ng01-040K08.g
ACCDH867541DH867542
length1,029860
definitionDH867541|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K08, 5' end.DH867542|Mus musculus domesticus DNA, BAC clone: B6Ng01-040K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,595,566 - 12,596,602)(12,459,829 - 12,460,688)
sequence
gaattctgttcccagcatcttcctcaatcactctttaccttatttgctgg
aggcaagatccctcactcagcctgcacactgaccattttgctagactggc
tggtcagcaagctatgagtgcaaccttcacagcaagcacttagatcgcat
gcaaacttaaaggcctctagcatttgtttgtttgtttgttaaatgggagt
tctggtggatggaaactatgtcttcatgcttatactaccagggttgacaa
tctgagcatcgccccagctcttgaacttcccgtctttctgcttcctcttc
actagtgcttgaacttctgagtctcctgcctccacctcccaagctgtggg
actaaaggattgtgctgtcagacacagtttatgaggtgttggggattaaa
tccagggcttcattcgtgttaaggaagcactctatcaactgagctacatc
tccgactgtctccaaaggcctacttccctccatttctctcccctaccttc
ccctcccatcccctccccccttcttttcttccttcctttctttcacaaag
taacacattttctaaggacattttatacatactaagttttagttggttct
tacccctactcccctccctttcttctctctgcccctccctgctgccctct
gccctcagtatttccccctttgctttcatattgtgtcctcaggcccactg
gcagatgctgttgcctgctgagcacctcacaggtcctcatatcacacttc
ctattgtttctcccgcccttctttcctccctgcccttcttaatgacccct
ctgggttccatacttgttctgcccatacttactcccacttaagcataccc
acagatgcttttttttaattccttttttattagatattttcttatttaca
tttcaaatgctatcccaaaagttccctatatgccccccccggcctgctcc
ctacccacccactccacttcttggctctggcgtcccctgtatggggtata
taaagttgcaagaccaaggggctctcttc
gaattctacatcttcatctgaaggctgctagcagaatactgacttccaga
cagctaggatatggtcttaaagccaatactcacagggccacacctactcc
aacaaggccacactttctaatagtgccactccctgggctgagcatataca
aaccatcacagatagatgatagatagatgatagatagatagatagataga
tagatagatagatagatagatagatattaactatgtagttacccttcata
ggaacctggtagtctagtagagacataatgtagagagacgtaattttagt
acaatatgaataaaggcaaaattttaaatatatgtaaactatacaacatt
cttgaatcctgcctatcacatgaaaagtagaaacagactacattaaatcc
aaattgactggtgatcttcatatataatttatgggaaagaagctacaatt
tacagctacaaaacagctatgttaatcaagagcttcactgattaagaatt
gatttaatgcaatcagtgtactattttggaaattttatttgctaagtcta
gtgttaacagaaagcatattggagttttctggatctattcactattgttt
aacagccatgagaatgtaagtaataacttagactcccaatgtctccgctt
cctcgtctacagcttacaggaaatagtgtttatagaactagggaaaatta
aaaacagcattgtgctttagaataaataacacagtatataagaaaaataa
tctctttataccataagtaaaagtaaaagtataggttgagtaattaaaac
tggcaagccaaccaccaaacacggctctattgtatatgtcagaaagattt
tgctgacggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_12595566_12596602
seq2: B6Ng01-040K08.b_45_1073 (reverse)

seq1  GAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATACCCCAGTACAGGGGG  50
      ||||||| ||||||||||||||| |||||||||||||||| |||| ||||
seq2  GAAGAGA-GCCCCTTGGTCTTGC-AACTTTATATACCCCA-TACA-GGGG  46

seq1  ACGCCAGAGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCCGGGG  100
      |||||||||||||||||| |||||||||||||| |||||||||  | |||
seq2  ACGCCAGAGCCAAGAAGT-GGAGTGGGTGGGTA-GGGAGCAGG--CCGGG  92

seq1  GGGGGCATATAGGGAACTTTTGGGATAGCATTTGAAATGTAAATAAAGAA  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGGCATATAGGGAACTTTTGGGATAGCATTTGAAATGTAAAT-AAGAA  141

seq1  AATATCTAATAAAAAAGGAATTAAAAAAAAGCATCTGTGGGTATGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAATAAAAAAGGAATTAAAAAAAAGCATCTGTGGGTATGCTTAA  191

seq1  GTGGGAGTAAGTATGGGCAGAACAAGTATGGAACCCAGAGGGGTCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTAAGTATGGGCAGAACAAGTATGGAACCCAGAGGGGTCATTAA  241

seq1  GAAGGGCAGGGAGGAAAGAAGGGCGGGAG-AACAATAGGAAGTGTGATAT  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAGGGCAGGGAGGAAAGAAGGGCGGGAGAAACAATAGGAAGTGTGATAT  291

seq1  GAGGACCTGTGAGGTGCTCAGCAGGCAACAGCATCTGCCAGTGGGCCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGTGAGGTGCTCAGCAGGCAACAGCATCTGCCAGTGGGCCTGA  341

seq1  GGACACAATATGAAAGCAAAGGGGGAAATACTGAGGGCAGAGGGCAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAATATGAAAGCAAAGGGGGAAATACTGAGGGCAGAGGGCAGCAG  391

seq1  GGAGGGGCAGAGAGAAGAAAGGGAGGGGAGTAGGGGTAAGAACCAACTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCAGAGAGAAGAAAGGGAGGGGAGTAGGGGTAAGAACCAACTAA  441

seq1  AACTTAGTATGTATAAAATGTCCTTAGAAAATGTGTTACTTTGTGAAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTATGTATAAAATGTCCTTAGAAAATGTGTTACTTTGTGAAAGA  491

seq1  AAGGAAGGAAGAAAAGAAGGGGGGAGGGGATGGGAGGGGAAGGTAGGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGAAAAGAAGGGGGGAGGGGATGGGAGGGGAAGGTAGGGGA  541

seq1  GAGAAATGGAGGGAAGTAGGCCTTTGGAGACAGTCGGAGATGTAGCTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGAGGGAAGTAGGCCTTTGGAGACAGTCGGAGATGTAGCTCAG  591

seq1  TTGATAGAGTGCTTCCTTAACACGAATGAAGCCCTGGATTTAATCCCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAGTGCTTCCTTAACACGAATGAAGCCCTGGATTTAATCCCCAA  641

seq1  CACCTCATAAACTGTGTCTGACAGCACAATCCTTTAGTCCCACAGCTTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATAAACTGTGTCTGACAGCACAATCCTTTAGTCCCACAGCTTGG  691

seq1  GAGGTGGAGGCAGGAGACTCAGAAGTTCAAGCACTAGTGAAGAGGAAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGAGGCAGGAGACTCAGAAGTTCAAGCACTAGTGAAGAGGAAGCA  741

seq1  GAAAGACGGGAAGTTCAAGAGCTGGGGCGATGCTCAGATTGTCAACCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACGGGAAGTTCAAGAGCTGGGGCGATGCTCAGATTGTCAACCCTG  791

seq1  GTAGTATAAGCATGAAGACATAGTTTCCATCCACCAGAACTCCCATTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATAAGCATGAAGACATAGTTTCCATCCACCAGAACTCCCATTTAA  841

seq1  CAAACAAACAAACAAATGCTAGAGGCCTTTAAGTTTGCATGCGATCTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACAAATGCTAGAGGCCTTTAAGTTTGCATGCGATCTAAG  891

seq1  TGCTTGCTGTGAAGGTTGCACTCATAGCTTGCTGACCAGCCAGTCTAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTGTGAAGGTTGCACTCATAGCTTGCTGACCAGCCAGTCTAGCA  941

seq1  AAATGGTCAGTGTGCAGGCTGAGTGAGGGATCTTGCCTCCAGCAAATAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCAGTGTGCAGGCTGAGTGAGGGATCTTGCCTCCAGCAAATAAG  991

seq1  GTAAAGAGTGATTGAGGAAGATGCTGGGAACAGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGTGATTGAGGAAGATGCTGGGAACAGAATTC  1029

seq1: chr19_12459829_12460688
seq2: B6Ng01-040K08.g_69_928

seq1  GAATTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCCAGA  50

seq1  CAGCTAGGATATGGTCTTAAAGCCAATACTCACAGGGCCACACCTACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATATGGTCTTAAAGCCAATACTCACAGGGCCACACCTACTCC  100

seq1  AACAAGGCCACACTTTCTAATAGTGCCACTCCCTGGGCTGAGCATATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCACACTTTCTAATAGTGCCACTCCCTGGGCTGAGCATATACA  150

seq1  AACCATCACAGATAGATGATAGATAGATGATAGATAGATAGATAGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCACAGATAGATGATAGATAGATGATAGATAGATAGATAGATAGA  200

seq1  TAGATAGATAGATAGATAGATAGATATTAACTATGTAGTTACCCTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATATTAACTATGTAGTTACCCTTCATA  250

seq1  GGAACCTGGTAGTCTAGTAGAGACATAATGTAGAGAGACGTAATTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGGTAGTCTAGTAGAGACATAATGTAGAGAGACGTAATTTTAGT  300

seq1  ACAATATGAATAAAGGCAAAATTTTAAATATATGTAAACTATACAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAATAAAGGCAAAATTTTAAATATATGTAAACTATACAACATT  350

seq1  CTTGAATCCTGCCTATCACATGAAAAGTAGAAACAGACTACATTAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCCTGCCTATCACATGAAAAGTAGAAACAGACTACATTAAATCC  400

seq1  AAATTGACTGGTGATCTTCATATATAATTTATGGGAAAGAAGCTACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACTGGTGATCTTCATATATAATTTATGGGAAAGAAGCTACAATT  450

seq1  TACAGCTACAAAACAGCTATGTTAATCAAGAGCTTCACTGATTAAGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTACAAAACAGCTATGTTAATCAAGAGCTTCACTGATTAAGAATT  500

seq1  GATTTAATGCAATCAGTGTACTATTTTGGAAATTTTATTTGCTAAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAATGCAATCAGTGTACTATTTTGGAAATTTTATTTGCTAAGTCTA  550

seq1  GTGTTAACAGAAAGCATATTGGAGTTTTCTGGATCTATTCACTATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACAGAAAGCATATTGGAGTTTTCTGGATCTATTCACTATTGTTT  600

seq1  AACAGCCATGAGAATGTAAGTAATAACTTAGACTCCCAATGTCTCCGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATGAGAATGTAAGTAATAACTTAGACTCCCAATGTCTCCGCTT  650

seq1  CCTCGTCTACAGCTTACAGGAAATAGTGTTTATAGAACTAGGGAAAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCTACAGCTTACAGGAAATAGTGTTTATAGAACTAGGGAAAATTA  700

seq1  AAAACAGCATTGTGCTTTAGAATAAATAACACAGTATATAAGAAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCATTGTGCTTTAGAATAAATAACACAGTATATAAGAAAAATAA  750

seq1  TCTCTTTATACCATAAGTTAAAGT-AAAGTATAGGTTGAGTAATTAAAAC  799
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TCTCTTTATACCATAAGTAAAAGTAAAAGTATAGGTTGAGTAATTAAAAC  800

seq1  TGGCAAGCCAACCACCAAACACAGGCACTATTGCATATGTCAGAAAGATT  849
      |||||||||||||||||||||| ||| |||||| ||||||||||||||||
seq2  TGGCAAGCCAACCACCAAACAC-GGCTCTATTGTATATGTCAGAAAGATT  849

seq1  TTGCTGACAGC  860
      |||||||| ||
seq2  TTGCTGACGGC  860