BAC Information

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BAC

Clone NameB6Ng01-041B02
Chromosome19 (Build37)
Map Location 22,085,125 - 22,267,491
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B02.bB6Ng01-041B02.g
ACCDH867839DH867840
length3331,002
definitionDH867839|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B02, 5' end.DH867840|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,267,159 - 22,267,491)(22,085,125 - 22,086,129)
sequence
caaacaaaataaccaaaccaaaaacaaagaaggatcaacacataaggctg
taagatatttgcattacaattcataacagcaacaaaattacatctataaa
caaaataattttatgggggtgtcactgcaacatgaggaactgggttaaag
ggttgcatcatgaggaagctcgaggtccactactataggaggacaaaata
acagaaaaatcttgcctgacccctgtatagggggactctcaaatgagtgg
cattctgatgctttaagaataaaaatcttgccccaggacaggggaacgcc
agggccaaaaagggggagtgggtgggtagggga
gaattcctttgaccatcttcaacacaacttatctatcaggcagcaattcc
cctgttgggttttgttatgctttgggctgccattcaaagaaaaatgttct
tctattaggagtaaaatgaaataaatagcctttgaggtcttaagaagcac
tgatgcaaaggtaaactttgagaaggggttctaaggaaatgatatggagc
tatgctgcatgtggggcgctgggctgccagaaaatggtatgaaaggaatt
cctggggcataaaatgctagtgactatgaccacagcattagaaaatcagt
aattccttagcactttagttccaattgtaacacttagcatggaggcacgt
aattgcaagttcaagggcaaactggcctatataatgagaccttctctcaa
aaaaaaagaatagcaaattaaaaatggtaaacacaagttacacatttcag
taaggctaaagatccttctgcttgcagaagataattagtagactaaaggc
aacaacataccaccaagtctgttactggtaacaaccaaaataacagatta
gccagcactcagggagccccgaggagtccagtagttagtgtgttgcgtga
tcagattctgtctgctttgacctacaaagcccaagttcaagactgtgata
ctttgctaacgttgcaatagcggtagaactcttctagagcaccgatcttg
tcccctcgccatggtgattatatcttggcactctgcagcactgtgagctt
tccaaatcttgctctttactcatgtgactcttataaccgaacatggagat
acatagagctattttaatgctaattatgcagagatattataacgtttttt
ttctttttcagttcctacagctcatctttaattttagggatttcttatgg
gaagtatcttaaaagatttttgttttccctttttttcttttaatttgctg
aacaacagctgttttagtttgtggctccttggccttaaaaacgtcttgct
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22267159_22267491
seq2: B6Ng01-041B02.b_50_382 (reverse)

seq1  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTCCTG  50

seq1  GGGCAAGATTTTTATTCTTAAAGCATCAGAATGCCACTCATTTGAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGATTTTTATTCTTAAAGCATCAGAATGCCACTCATTTGAGAGTC  100

seq1  CCCCTATACAGGGGTCAGGCAAGATTTTTCTGTTATTTTGTCCTCCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATACAGGGGTCAGGCAAGATTTTTCTGTTATTTTGTCCTCCTATA  150

seq1  GTAGTGGACCTCGAGCTTCCTCATGATGCAACCCTTTAACCCAGTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGACCTCGAGCTTCCTCATGATGCAACCCTTTAACCCAGTTCCTC  200

seq1  ATGTTGCAGTGACACCCCCATAAAATTATTTTGTTTATAGATGTAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAGTGACACCCCCATAAAATTATTTTGTTTATAGATGTAATTTT  250

seq1  GTTGCTGTTATGAATTGTAATGCAAATATCTTACAGCCTTATGTGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTATGAATTGTAATGCAAATATCTTACAGCCTTATGTGTTGAT  300

seq1  CCTTCTTTGTTTTTGGTTTGGTTATTTTGTTTG  333
      |||||||||||||||||||||||||||||||||
seq2  CCTTCTTTGTTTTTGGTTTGGTTATTTTGTTTG  333

seq1: chr19_22085125_22086129
seq2: B6Ng01-041B02.g_70_1071

seq1  GAATTCCTTTGACCATCTTCAACACAACTTATCTATCAGGCAGCAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGACCATCTTCAACACAACTTATCTATCAGGCAGCAATTCC  50

seq1  CCTGTTGGGTTTTGTTATGCTTTGGGCTGCCATTCAAAGAAAAATGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGGTTTTGTTATGCTTTGGGCTGCCATTCAAAGAAAAATGTTCT  100

seq1  TCTATTAGGAGTAAAATGAAATAAATAGCCTTTGAGGTCTTAAGAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAGGAGTAAAATGAAATAAATAGCCTTTGAGGTCTTAAGAAGCAC  150

seq1  TGATGCAAAGGTAAACTTTGAGAAGGGGTTCTAAGGAAATGATATGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAAAGGTAAACTTTGAGAAGGGGTTCTAAGGAAATGATATGGAGC  200

seq1  TATGCTGCATGTGGGGCGCTGGGCTGCCAGAAAATGGTATGAAAGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCATGTGGGGCGCTGGGCTGCCAGAAAATGGTATGAAAGGAATT  250

seq1  CCTGGGGCATAAAATGCTAGTGACTATGACCACAGCATTAGAAAATCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCATAAAATGCTAGTGACTATGACCACAGCATTAGAAAATCAGT  300

seq1  AATTCCTTAGCACTTTAGTTCCAATTGTAACACTTAGCATGGAGGCACGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAGCACTTTAGTTCCAATTGTAACACTTAGCATGGAGGCACGT  350

seq1  AATTGCAAGTTCAAGGGCAAACTGGCCTATATAATGAGACCTTCTCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAAGTTCAAGGGCAAACTGGCCTATATAATGAGACCTTCTCTCAA  400

seq1  AAAAAAAGAATAGCAAATTAAAAATGGTAAACACAAGTTACACATTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAATAGCAAATTAAAAATGGTAAACACAAGTTACACATTTCAG  450

seq1  TAAGGCTAAAGATCCTTCTGCTTGCAGAAGATAATTAGTAGACTAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAAAGATCCTTCTGCTTGCAGAAGATAATTAGTAGACTAAAGGC  500

seq1  AACAACATACCACCAAGTCTGTTACTGGTAACAACCAAAATAACAGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATACCACCAAGTCTGTTACTGGTAACAACCAAAATAACAGATTA  550

seq1  GCCAGCACTCAGGGAGCCCCGAGGAGTCCAGTAGTTAGTGTGTTGCGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACTCAGGGAGCCCCGAGGAGTCCAGTAGTTAGTGTGTTGCGTGA  600

seq1  TCAGATTCTGTCTGCTTTGACCTACAAAGCCCAAGTTCAAGACTGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCTGTCTGCTTTGACCTACAAAGCCCAAGTTCAAGACTGTGATA  650

seq1  CTTTGCTAACGTTGCAATAGCGGTAGAACTCTTCTAGAGCACCGATCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTAACGTTGCAATAGCGGTAGAACTCTTCTAGAGCACCGATCTTG  700

seq1  TCCCCTCGCCATGGTGATTATATCTTGGCACTCTGCAGCACTGTGAGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCGCCATGGTGATTATATCTTGGCACTCTGCAGCACTGTGAGCTT  750

seq1  TCCAAATCTTGCTC-TTACTCATGTGACTCTTATAACCGAACATGGAGAT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCAAATCTTGCTCTTTACTCATGTGACTCTTATAACCGAACATGGAGAT  800

seq1  ACATAGAGCTA-TTTAATGCTAATTATGCAGAGATATTAT-ACGTTTTTT  847
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  ACATAGAGCTATTTTAATGCTAATTATGCAGAGATATTATAACGTTTTTT  850

seq1  T--CTTTTCAGTTTCTACAGCTCATCTTTAATTTTTAGGATTTCCTTATG  895
      |   ||||||||| |||||||||||||||||||||  |||||| ||||||
seq2  TTCTTTTTCAGTTCCTACAGCTCATCTTTAATTTTAGGGATTT-CTTATG  899

seq1  GGAAGTATCTTAATAGATTTTTGTTTTCCCTTTTTTTCTTTTTAATTTGC  945
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GGAAGTATCTTAAAAGATTTTTGTTTTCCCTTTTTTTC-TTTTAATTTGC  948

seq1  TGAAACAACAGCCTGTTTTAGTTTTGTGGTCTCCTTGGTCTTTAAAACCG  995
      || |||||||| ||||||||| ||||||| |||||||| | |||||| ||
seq2  TG-AACAACAG-CTGTTTTAG-TTTGTGG-CTCCTTGG-CCTTAAAAACG  993

seq1  TCTTTGCTTA  1005
      || |||||||
seq2  TC-TTGCTTA  1002