BAC Information

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BAC

Clone NameB6Ng01-042J24
Chromosome19 (Build37)
Map Location 26,101,140 - 26,219,656
singlet/doubletdoublet
Overlap gene1700048O14Rik
Upstream geneDock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J24.bB6Ng01-042J24.g
ACCDH868940DH868941
length1,147734
definitionDH868940|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J24, 5' end.DH868941|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,101,140 - 26,102,603)(26,218,925 - 26,219,656)
sequence
gaattcttaaattggaagtgcgctgaagcactgagtaaatatttacagac
tgggcagatgagaaaaactgtaattccccttaagggcaatatgcaaacca
gttgagcttagatcttttgtagttctgactggctgctgcccagcccagca
acaaggtgtttggtaaataaaactaatacctcttttatagtttgatcaat
atctgtgtgttgggctgaaattgtttccattgttttttaaaagattagtt
tcatttactcaatatgtcacattatctgcctggcaaagggtgtgaaggcc
cacctatatcttgactgaactagacttccggttttcttccgctgttcttt
ccagctccatagacctttgagatgacccacatgtcaggtgacaggaggtg
gtaacataggaaacatattaggcagaggtcaaaggtggactaggcaagag
tcaagggcaagggatggtgatgaatagtgttaacaacttaggatgacctt
tagaatgagggttctagaaccttccaattgagtttggtttccaagcagat
ggtagctacttccaggtagtgaaacataactgtactaagaatttttcaga
gatcctcagagtcatggcttacaaccaaggatttggaattagatgttaaa
attccagagttttccccataatcatagtaagtgacataagatagcaaatt
ttctagcttggcttccaatgattctcttggaagaaaaatttataagccaa
gattgtaggacccttttctggagatggatcaagaagatgggaatggaccc
aatgctgttttattttactgatgttgttattattgtttctcagaagataa
aattattgtccttaggctttttgtatctccaatttttgaaggaacatcac
aggaaaggaactctgtctctgagaagggcccttcctggcccttgacttgt
aattgggatcctccttgcctggtttcttcacagcactttaaactagaaat
tatggttttctcatttggttactatttggacctattacccaccagaaatc
aggatcacattaccagggtttctgtcttcttacaatgcagtatgcagtag
cagaagagcagcagtaggtcgtcagaggccacactgtatccacccaa
gaattctttagagtagaatgtgtcaaaagaagacaaaagttatatatcct
gtttcttagtatttgatgtggctaattaagaaatacctacagagccagac
aaaatcccagaatggaggaagggaggtggatagaaagttctgcccctcgc
agagaagcaatttgcctgtgattgctgctgggattactgctttcttcaat
ggactggcacctggtgtgtctaccacactccaggagtaatctttcaacat
aagacatacttgatttcttttgtggggagacacacacacagagagggaga
gagagagagacagagacagagacagagacagacagagggacagagagaca
gaaacagagacagagacagacagagaagcagagagagacagagagacaga
aagagacagagagaaagacagaaacagaagcagagagagacagagagaaa
gacagaaagagacagagaaagacagagacagacagagaggcagagagaga
cagagagaaagacagaaagagacagagaaagacagagacagacagagagg
cagagagagacagagagaatgaagatgagaaagtagggatacaggggagg
atccggaagaagatggaggaggggatgtatatgagcaaaatgaactgtac
aaaacttccaaagaattaatttttttaatgacatattcatcaggaacatg
aaacctaggcttactgacagctttactgcatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26101140_26102603
seq2: B6Ng01-042J24.b_44_1190

seq1  GAATTCTTAAATTGGAAGTGCGCTGAAGCACTGAGTAAATATTTACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAATTGGAAGTGCGCTGAAGCACTGAGTAAATATTTACAGAC  50

seq1  TGGGCAGATGAGAAAAACTGTAATTCCCCTTAAGGGCAATATGCAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATGAGAAAAACTGTAATTCCCCTTAAGGGCAATATGCAAACCA  100

seq1  GTTGAGCTTAGATCTTTTGTAGTTCTGACTGGCTGCTGCCCAGCCCAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCTTAGATCTTTTGTAGTTCTGACTGGCTGCTGCCCAGCCCAGCA  150

seq1  ACAAGGTGTTTGGTAAATAAAACTAATACCTCTTTTATAGTTTGATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGTTTGGTAAATAAAACTAATACCTCTTTTATAGTTTGATCAAT  200

seq1  ATCTGTGTGTTGGGCTGAAATTGTTTCCATTGTTTTTTAAAAGATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGTTGGGCTGAAATTGTTTCCATTGTTTTTTAAAAGATTAGTT  250

seq1  TCATTTACTCAATATGTCACATTATCTGCCTGGCAAAGGGTGTGAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTCAATATGTCACATTATCTGCCTGGCAAAGGGTGTGAAGGCC  300

seq1  CACCTATATCTTGACTGAACTAGACTTCCGGTTTTCTTCCGCTGTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATATCTTGACTGAACTAGACTTCCGGTTTTCTTCCGCTGTTCTTT  350

seq1  CCAGCTCCATAGACCTTTGAGATGACCCACATGTCAGGTGACAGGAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCATAGACCTTTGAGATGACCCACATGTCAGGTGACAGGAGGTG  400

seq1  GTAACATAGGAAACATATTAGGCAGAGGTCAAAGGTGGACTAGGCAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATAGGAAACATATTAGGCAGAGGTCAAAGGTGGACTAGGCAAGAG  450

seq1  TCAAGGGCAAGGGATGGTGATGAATAGTGTTAACAACTTAGGATGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCAAGGGATGGTGATGAATAGTGTTAACAACTTAGGATGACCTT  500

seq1  TAGAATGAGGGTTCTAGAACCTTCCAATTGAGTTTGGTTTCCAAGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGGGTTCTAGAACCTTCCAATTGAGTTTGGTTTCCAAGCAGAT  550

seq1  GGTAGCTACTTCCAGGTAGTGAAACATAACTGTACTAAGAATTTTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTACTTCCAGGTAGTGAAACATAACTGTACTAAGAATTTTTCAGA  600

seq1  GATCCTCAGAGTCATGGCTTACAACCAAGGATTTGGAATTAGATGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCAGAGTCATGGCTTACAACCAAGGATTTGGAATTAGATGTTAAA  650

seq1  ATTCCAGAGTTTTCCCCATAATCATAGTAAGTGACATAAGATAGCAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGAGTTTTCCCCATAATCATAGTAAGTGACATAAGATAGCAAATT  700

seq1  TTCTAGCTTGGCTTCCAATGATTCTCTTGGAAGAAAAATTTATAAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTTGGCTTCCAATGATTCTCTTGGAAGAAAAATTTATAAGCCAA  750

seq1  GATTGTAGGACCCTTTTCTGGAGATGGATCAAGAAGATGGGAATGGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAGGACCCTTTTCTGGAGATGGATCAAGAAGATGGGAATGGACCC  800

seq1  AATGCTGTTTTATTTTACTGATGTTGTTATTATTGTTTCTCAGAAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTTTTATTTTACTGATGTTGTTATTATTGTTTCTCAGAAGATAA  850

seq1  AATTATTGTCCTTAGGCTTTTTGTATCTCCAATTTTTGAAGGAACATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTCCTTAGGCTTTTTGTATCTCCAATTTTTGAAGGAACATCAC  900

seq1  AGGGAAAGGAACTCTGTCTCTGAGAAGGGCCCTTCCTGGCCCCTTGACTT  950
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  A-GGAAAGGAACTCTGTCTCTGAGAAGGGCCCTTCCTGG-CCCTTGACTT  948

seq1  GTAATTGGGATCCTCCTTGCCTGGTTTCCTCCACAGCACTTTAAACTAGA  1000
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GTAATTGGGATCCTCCTTGCCTGGTTT-CTTCACAGCACTTTAAACTAGA  997

seq1  AATTATTGTTTTTCTTCATTTGTTTACTATTTGGACCTATTTACCCACCA  1050
      |||||| |||||   ||||||| |||||||||||||||| ||||||||| 
seq2  AATTATGGTTTT--CTCATTTGGTTACTATTTGGACCTA-TTACCCACC-  1043

seq1  AGAAATCAGGGATCACATTTACCA-GGTTTCTGTCTCTTTAACATTGCCA  1099
      |||||||| |||||||| |||||| ||||||||||| | | ||| |||  
seq2  AGAAATCA-GGATCACA-TTACCAGGGTTTCTGTCT-TCTTACAATGC--  1088

seq1  GGTATGCAGTTAGCAAGGAAAGAGCAGGCAAGTAGGGCCCGTCAGGAGGC  1149
       |||||||| |||||    ||||||||   ||||||   ||||||  | |
seq2  AGTATGCAG-TAGCA---GAAGAGCAG--CAGTAGG--TCGTCAGAGGCC  1130

seq1  ACACTGTA-CCACTC-AGAGTCCTGAATAAAAAGACAAATCCAATGTGAG  1197
      |||||||| |||| | |                                 
seq2  ACACTGTATCCACCCAA---------------------------------  1147

seq1  AGGTTTCTATCCCAACATTACTAACTGCCCCTAACCCTAATAACAATCCT  1247
                                                        
seq2  --------------------------------------------------  1147

seq1  GCCTTTAGAATTAGAAGTCTCCTTAACAGCATACCTGAAGGAGCAGGTAA  1297
                                                        
seq2  --------------------------------------------------  1147

seq1  GGGAATACCAGTAAGTAGATAATTCCTTCAGCACAAGATAAGCACACTCA  1347
                                                        
seq2  --------------------------------------------------  1147

seq1  GAGATGCTCTTATAAGAAGTCATCCTGTCAAAACATGTCCTCTCCCCTCT  1397
                                                        
seq2  --------------------------------------------------  1147

seq1  GAGTCCCTCAGCAGGAAGTCTACTGTCCTTCAGGTATTCTAGAGTAACAG  1447
                                                        
seq2  --------------------------------------------------  1147

seq1  AAGCATACTCCACCCAA  1464
                       
seq2  -----------------  1147

seq1: chr19_26218925_26219656
seq2: B6Ng01-042J24.g_66_799 (reverse)

seq1  AAAATGCAGTAAAGCTGTCAGTAGGCCTAGG-TTCATGTTCTTGATGAAT  49
      ||||||||||||||||||||||| ||||||| ||||||||| ||||||||
seq2  AAAATGCAGTAAAGCTGTCAGTAAGCCTAGGTTTCATGTTCCTGATGAAT  50

seq1  ATGTC-TTTAAAAAATTTATTCTTTGGAAGTTTTGTACAGTTCATTTTGC  98
      ||||| || |||||||| ||||||||||||||||||||||||||||||||
seq2  ATGTCATTAAAAAAATTAATTCTTTGGAAGTTTTGTACAGTTCATTTTGC  100

seq1  TCATATACATCCCCTCCTCCATCTTCTTCCGGATCCTCCCCTGTATCCCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATACATCCCCTCCTCCATCTTCTTCCGGATCCTCCCCTGTATCCCT  150

seq1  ACTTTCTCATCTTCATTCTCTCTGTCTCTCTCTGCCTCTCTGTCTGTCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCATCTTCATTCTCTCTGTCTCTCTCTGCCTCTCTGTCTGTCTC  200

seq1  TGTCTTTCTCTGTCTCTTTCTGTCTTTCTCTCTGTCTCTCTCTGCCTCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTCTGTCTCTTTCTGTCTTTCTCTCTGTCTCTCTCTGCCTCTC  250

seq1  TGTCTGTCTCTGTCTTTCTCTGTCTCTTTCTGTCTTTCTCTCTGTCTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTCTGTCTTTCTCTGTCTCTTTCTGTCTTTCTCTCTGTCTCTC  300

seq1  TCTGCTTCTGTTTCTGTCTTTCTCTCTGTCTCTTTCTGTCTCTCTGTCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTGTTTCTGTCTTTCTCTCTGTCTCTTTCTGTCTCTCTGTCTC  350

seq1  TCTCTGCTTCTCTGTCTGTCTCTGTCTCTGTTTCTGTCTCTCTGTCCCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTCTCTGTCTGTCTCTGTCTCTGTTTCTGTCTCTCTGTCCCTC  400

seq1  TGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCCCTCTCTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCCCTCTCTGTGTG  450

seq1  TGTGTCTCCCCACAAAAGAAATCAAGTATGTCTTATGTTGAAAGATTACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCCCCACAAAAGAAATCAAGTATGTCTTATGTTGAAAGATTACT  500

seq1  CCTGGAGTGTGGTAGACACACCAGGTGCCAGTCCATTGAAGAAAGCAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTGTGGTAGACACACCAGGTGCCAGTCCATTGAAGAAAGCAGTA  550

seq1  ATCCCAGCAGCAATCACAGGCAAATTGCTTCTCTGCGAGGGGCAGAACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAGCAATCACAGGCAAATTGCTTCTCTGCGAGGGGCAGAACTT  600

seq1  TCTATCCACCTCCCTTCCTCCATTCTGGGATTTTGTCTGGCTCTGTAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCACCTCCCTTCCTCCATTCTGGGATTTTGTCTGGCTCTGTAGGT  650

seq1  ATTTCTTAATTAGCCACATCAAATACTAAGAAACAGGATATATAACTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAATTAGCCACATCAAATACTAAGAAACAGGATATATAACTTTT  700

seq1  GTCTTCTTTTGACACATTCTACTCTAAAGAATTC  732
      ||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTGACACATTCTACTCTAAAGAATTC  734